Name: Streptomyces albidoflavus Duch
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14904

Type strain:

Species: Streptomyces albidoflavus

Strain Designation: Duch

Culture col. no.: DSM 40455, ATCC 25422, CBS 416.34, CBS 920.69, IFO 13010, ISP 5455, JCM 4446, NBRC 13010, NRRL B-1271, RIA 1202, BCRC 13699, CGMCC 4.1291, CIP 105122, ICMP 12537, IMSNU 20133, IMSNU 21006, KCTC 9202, LMG 19300, MTCC 932, NBIMCC 2386, NCIMB 10043, NRRL B-2663, VKM Ac-746, VTT E-991429, KCC S-0466

Strain history: CIP <- 1997, IFO <- 1969, SAJ <- E.B. Shirling: strain ISP 5455 <- CBS <- J. Duche

NCBI tax ID(s): 1886 (species)

SI-ID 45753

LMG 19300, ATCC 25422, CCRC 13699, DSM 40455, IFO 13010, JCM 4446, NCIMB 10043, NRRL B-1271, NRRL B-2663, VKM Ac-746, CIP 105122, CBS416.34, AS 4.1291, KCTC 9202, NBRC 13010, BCRC 13699, ICMP 12537, NBIMCC 2386, NCIB 10043, CGMCC 4.1291, VTT E-991429

Other strains from Streptomyces albidoflavus

Section

Streptomyces albidoflavus Duch is a spore-forming, mesophilic, Gram-positive bacterium of the family Streptomycetaceae.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces albidoflavus**
	Full Scientific Name (LPSN)	Streptomyces albidoflavus (Rossi Doria 1891) Waksman and Henrici 1948 (Approved Lists 1980)

	Synonym	Streptomyces griseus subsp. solvifaciens
	Synonym	Streptomyces limosus
	Synonym	"Actinomyces* sampsonii"*
	Synonym	"Actinomyces* globisporus subsp. caucasicus"*
	Synonym	"Cladothrix* odorifera"*
	Synonym	Streptomyces felleus
	Synonym	Streptomyces sampsonii
	Synonym	Streptomyces odorifer
	Synonym	Streptomyces coelicolor
	Synonym	"Streptothrix* coelicolor"*
	Synonym	"Streptotrix* albidoflava"*
	Synonym	Streptomyces globisporus subsp. caucasicus
	Synonym	Streptomyces canescens
	Synonym	Streptomyces champavatii

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

MEDIUM 122 - for Streptomyces

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

CIP Medium 122

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9555]	growth	28 °C
[Ref.: #18592]	optimum	30 °C
[Ref.: #41508]	growth	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9555]	Temperature range	mesophilic
[Ref.: #18592]	Temperature range	mesophilic
[Ref.: #41508]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18592]		NaCl		maximum	7.5	%

[Ref.: #67770]

Observation

quinones: MK-9(H₈), MK-9(H₆)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18592]	arabinose ChEBI	-
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18592]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #18592]	fructose ChEBI	-
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18592]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #18592]	mannitol ChEBI	-
[Ref.: #18592]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #18592]	raffinose ChEBI	-
[Ref.: #18592]	rhamnose ChEBI	-
[Ref.: #18592]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18592]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18592]	149	+	+	+	+	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence Z76676 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	5
Soil Samples	39
Animal Samples	85
Plant Samples
Total Samples	129

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18592]	Biosafety level	1	German classification
[Ref.: #9555]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116188]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces albidoflavus 16S rRNA gene, partial	AJ002090	1482	ENA	1886 tax ID
[Ref.: #9555]	Streptomyces albidoflavus gene for 16S rRNA, partial sequence, strain: NBRC 13010	AB184255	1478	ENA	1886 tax ID
[Ref.: #20218]	S.albidoflavus (DSM 40455T) 16S rRNA gene	Z76676	1476	ENA	1886 tax ID	*
[Ref.: #20218]	S.albidoflavus 16S-23S rDNA intergenic spacer (DSM 40455T; clone-1)	Z77332	314	ENA	1886 tax ID	*
[Ref.: #20218]	S.albidoflavus 16S-23S rDNA intergenic spacer (DSM 40455T; clone-2)	Z77333	318	ENA	1886 tax ID	*
[Ref.: #20218]	S.albidoflavus 16S-23S rDNA intergenic spacer (DSM 40455T; clone-3)	Z77334	314	ENA	1886 tax ID	*
[Ref.: #20218]	S.albidoflavus 16S-23S rDNA intergenic spacer (DSM 40455T; clone-4)	Z77335	319	ENA	1886 tax ID	*
[Ref.: #20218]	S.albidoflavus 16S-23S rDNA intergenic spacer (DSM 40455T; clone-5)	Z77336	311	ENA	1886 tax ID	*
[Ref.: #20218]	S.albidoflavus 16S-23S rDNA intergenic spacer (DSM 40455T; clone-6)	Z77337	319	ENA	1886 tax ID	*
[Ref.: #20218]	S.albidoflavus 16S-23S rDNA intergenic spacer (DSM 40455T; clone-7)	Z77338	319	ENA	1886 tax ID	*
[Ref.: #20218]	S.albidoflavus 16S-23S rDNA intergenic spacer (DSM 40455T; clone-8)	Z77339	318	ENA	1886 tax ID	*
[Ref.: #20218]	S.albidoflavus 16S-23S rDNA intergenic spacer (DSM 40455T; clone-9)	Z77340	319	ENA	1886 tax ID	*
[Ref.: #20218]	S.albidoflavus 16S-23S rDNA intergenic spacer (DSM 40455T; clone-10)	Z77341	319	ENA	1886 tax ID	*
[Ref.: #20218]	Streptomyces albidoflavus gene for 16S ribosomal RNA, partial sequence, isolate: R1-2A/H206	AB922842	1192	ENA	1886 tax ID	*
[Ref.: #20218]	Streptomyces albidoflavus strain DSM 40455 16S ribosomal RNA gene, partial sequence	FJ406048	1392	ENA	1886 tax ID	*
[Ref.: #20218]	Streptomyces albidoflavus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4446	D44143	120	ENA	1886 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces albidoflavus NRRL B-1271	GCA_000719955	contig	GenBank	1886 tax ID
[Ref.: #67770]	Streptomyces albidoflavus DSM 40455	GCA_004195735	contig	GenBank	1886 tax ID
[Ref.: #66792]	Streptomyces albidoflavus strain DSM 40455	1886.37	wgs	PATRIC	1886 tax ID	*

[Ref.: #9555]	GC-content	74 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	70 mol%	fluorimetric
[Ref.: #67770]	GC-content	73.4 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces albidoflavus strain DSM 40455 PATRIC: 1886.37
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces albidoflavus strain DSM 40455 PATRIC: 1886.37
[Ref.: #69480]	motile	no	95.404	no
[Ref.: #69480]	gram-positive	yes	93.093	no
[Ref.: #69480]	anaerobic	no	99.288	no
[Ref.: #69480]	aerobic	yes	94.423	no
[Ref.: #69480]	halophile	no	89.133	no
[Ref.: #69480]	spore-forming	yes	95.499	no
[Ref.: #69480]	glucose-util	yes	88.578	no
[Ref.: #69480]	flagellated	no	97.76	no
[Ref.: #69480]	thermophile	no	98.309	yes
[Ref.: #69480]	glucose-ferment	no	84.138	no

Availability in culture collections External links

[Ref.: #9555]

Culture collection no.

DSM 40455, ATCC 25422, CBS 416.34, CBS 920.69, IFO 13010, ISP 5455, JCM 4446, NBRC 13010, NRRL B-1271, RIA 1202, BCRC 13699, CGMCC 4.1291, CIP 105122, ICMP 12537, IMSNU 20133, IMSNU 21006, KCTC 9202, LMG 19300, MTCC 932, NBIMCC 2386, NCIMB 10043, NRRL B-2663, VKM Ac-746, VTT E-991429, KCC S-0466

[Ref.: #84013]

SI-ID 45753

Literature:

Topic	Title	Authors	Journal	DOI	Year
Biotechnology	Screening for Non-polyenic Antifungal Produced by Actinobacteria from Moroccan Habitats: Assessment of Antimycin A19 Production by Streptomyces albidoflavus AS25.	Nafis A, Elhidar N, Oubaha B, Samri SE, Niedermeyer T, Ouhdouch Y, Hassani L, Barakate M	Int J Mol Cell Med	10.22088/IJMCM.BUMS.7.2.133	2018	*
Phylogeny	Streptomyces ferrugineus sp. nov., isolated from mangrove soil in Thailand.	Ruan CY, Zhang L, Ye WW, Xie XC, Srivibool R, Duangmal K, Pathom-aree W, Deng ZX, Hong K	Antonie Van Leeuwenhoek	10.1007/s10482-014-0301-6	2014	*
	Characterisation of Streptomyces spp. isolated from water-damaged buildings.	Suutari M, Ronka E, Lignell U, Rintala H, Nevalainen A	FEMS Microbiol Ecol	10.1111/j.1574-6941.2002.tb00908.x	2002	*

References

#9555

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40455

#18592

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41508 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84013

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45753.1 )

#116188 Collection of Institut Pasteur ; Curators of the CIP; CIP 105122
* These data were automatically processed and therefore are not curated

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Streptomyces albidoflavus strain DSM 40455

Streptomyces albidoflavus strain DSM 40455

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