Pseudomonas sp. (DSM 102686, Leaf48)

Name: Pseudomonas sp. (DSM 102686, Leaf48)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131905

Type strain

Strain Designation Leaf48

Culture col. no. DSM 102686 Leaf48

NCBI tax ID(s) 306

Special Collections DSMZ Arabidopsis

History DSMZ <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf48 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

Links

Leaf48 is a bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 406112

DSM 102686

@ref 20215

Last LPSN update 2026-05-29 08:37:43

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Full scientific name Pseudomonas Migula 1894 (Approved Lists 1980)

Synonyms (9)

Metapseudomonas
Zestomonas
"Caenipseudomonas"
Phytopseudomonas
Ectopseudomonas
Aquipseudomonas
Geopseudomonas
Flavimonas
Chryseomonas

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125438		93.555
125438		99.5	negative

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
23697	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
23697	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	91.633
125439	obligate aerobe	96.316

Spore formation

@ref	Spore formation	Confidence
125439		99.595

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
23697	leaf of Arabidopsis thaliana, wild-type genotype	Arabidopsis thaliana	Brugg (47.4816806N 8.217547222E)	Switzerland	CHE	Europe	47.4817	8.2176 47.4817/8.2176

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Leaf48 assembly for Pseudomonas sp. Leaf48	scaffold	GCA_001421885	1736221.3	2643221771	1736221	72.9

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Leaf48 assembly for Pseudomonas sp. Leaf48
BV-BRC: 1736221.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.32	no
125439	gram_stain	BacteriaNetⓘ	negative	89.16	no
125439	motility	BacteriaNetⓘ	yes	77.91	no
125439	spore_formation	BacteriaNetⓘ	no	99.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas sp. Leaf48 Leaf48
NCBI: GCA_001421885.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	98.36	no
125438	aerobic	aerobicⓘ	yes	91.63	no
125438	spore-forming	spore-formingⓘ	no	84.90	no
125438	thermophilic	thermophileⓘ	no	96.99	no
125438	flagellated	motile2+ⓘ	yes	93.56	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23697	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102686
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us