Strain identifier
BacDive ID: 131905
Type strain: 
Species: Pseudomonas sp.
Strain Designation: Leaf48
Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf48 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann
NCBI tax ID(s): 306 (species)
General
@ref: 23697
BacDive-ID: 131905
DSM-Number: 102686
keywords: genome sequence, Bacteria, mesophilic
description: Pseudomonas sp. Leaf48 is a mesophilic bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.
NCBI tax id
- NCBI tax id: 306
- Matching level: species
strain history
- @ref: 23697
- history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf48 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann
doi: 10.13145/bacdive131905.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas sp.
- full scientific name: Pseudomonas Migula 1894 (Approved Lists 1980)
synonyms
@ref synonym 20215 Serpens 20215 Flavimonas 20215 Stutzerimonas
@ref: 23697
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas sp.
full scientific name: Pseudomonas sp.
strain designation: Leaf48
type strain: no
Culture and growth conditions
culture medium
- @ref: 23697
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 23697
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 23697
- sample type: leaf of Arabidopsis thaliana, wild-type genotype
- host species: Arabidopsis thaliana
- geographic location: Brugg (47.4816806N 8.217547222E)
- country: Switzerland
- origin.country: CHE
- continent: Europe
- latitude: 47.4817
- longitude: 8.2176
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Leaf (Phyllosphere) |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pseudomonas sp. Leaf48 | GCA_001421885 | scaffold | ncbi | 1736221 |
| 66792 | Pseudomonas sp. Leaf48 | 1736221.3 | wgs | patric | 1736221 |
| 66792 | Pseudomonas sp. Leaf48 | 2643221771 | draft | img | 1736221 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | yes | 85.742 | no |
| gram-positive | no | 98.257 | no |
| anaerobic | no | 98.009 | no |
| aerobic | yes | 93.002 | no |
| halophile | no | 89.667 | no |
| spore-forming | no | 95.345 | no |
| thermophile | no | 99.833 | no |
| glucose-util | yes | 90.443 | no |
| motile | yes | 92.784 | no |
| glucose-ferment | no | 89.751 | no |
External links
@ref: 23697
culture collection no.: DSM 102686
straininfo link
- @ref: 90292
- straininfo: 406112
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23697 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102686 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102686) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 90292 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406112.1 |