Name: Pseudomonas sp. Clm
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131890

Type strain:

Species: Pseudomonas sp.

Strain Designation: Clm

Culture col. no.: DSM 29075, CB 1

Strain history: <- S. Khelaifia, Timone Hospital, Marseille, France; CB1 <- S. Khelaifia, Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes

NCBI tax ID(s): 306 (species)

SI-ID 404188

DSM 29075

Other strains from Pseudomonas sp.

P. sp. PL-679 Meito, DSM 1239, ATCC 31371, ...
P. sp. EBC 191, DSM 7155
P. sp. 6, DSM 8569
P. sp. DSM 50154, ATCC 17412, ICPB 2755-33, ...
P. sp. R-160, DSM 50189, ATCC 17442, ICPB ...
P. sp. To8, DSM 3601
P. sp. Fu1, DSM 6384
P. sp. G786, PpG786, DSM 7162, ATCC 29607
P. sp. CP1, DSM 13337
P. sp. 39/D, F39/D, DSM 14157, DSM 6414
P. sp. DSM 1110
P. sp. C-83, DSM 1991
P. sp. 2829 B, DSM 2583, CCUG 52768
P. sp. O6, DSM 3602
P. sp. MT14, pWW14, pWW17, DSM 3933
P. sp. MT14-26, pWW14, DSM 3934, NCIB ...
P. sp. MT14-101, pWW17-1, DSM 3935, NCIB ...
P. sp. ChinIK, DSM 6412
P. sp. Ch1, DSM 6426, CCUG 54619
P. sp. DSM 6538
P. sp. RHO23, DSM 6611
P. sp. 1A, DSM 6837
P. sp. GK13, DSM 7139
P. sp. 13alt, DSM 7322
P. sp. DSM 7152, BC 10, CRBIP3.1923
P. sp. MOBC 3, DSM 7154
P. sp. OCU 101, DSM 7220, ATCC 29423, ...
P. sp. JD3, DSM 8544
P. sp. 5, DSM 8568
P. sp. pWW17, MT 14-100, DSM 9246
P. sp. 2CBS, DSM 9959
P. sp. PWD12, DSM 11569
P. sp. c2IV, DSM 11389
P. sp. a3, DSM 11390
P. sp. PWD27, DSM 11565
P. sp. JR12, DSM 12019
P. sp. AT, DSM 12280, CCUG 54621
P. sp. DSM 12645
P. sp. EK1, DSM 12800
P. sp. PS+, DSM 12877
P. sp. OPS 1, DSM 14291
P. sp. ASK-1, DSM 15671
P. sp. FA1, DSM 17591
P. sp. DSM 46290, IMET 10893, SG 1160
P. sp. 18, DSM 50117, ATCC 17400, ICPB ...
P. sp. DSM 50317, DSM 60234, NCPPB 152
P. sp. A.3.12, DSM 50906, ICPB 2484
P. sp. 1.82, CL 1.82, DSM 21086
P. sp. 4.4-99, DSM 21087, WB 4.4-99
P. sp. 4.4-63, DSM 21088, WB 4.4-63
P. sp. BF64, DSM 21089
P. sp. 3.2-34, DSM 21090, WB 3.2-34
P. sp. KO_60, DSM 30825
P. sp. FR2-MS8, DSM 30749
P. sp. FRC, DSM 24389
P. sp. ID 09-296, G53, DSM 25830
P. sp. G62, DSM 25842
P. sp. DSM 21482, HER 1102
P. sp. ES1-129-4, DSM 30510
P. sp. ES1-138F, DSM 30520
P. sp. ES1-138S, DSM 30521
P. sp. CT 364, CT364, DSM 25356
P. sp. CT 387, CT387, DSM 25357
P. sp. CT42, DSM 25369
P. sp. CT357, DSM 25370
P. sp. CT363, DSM 25371
P. sp. HCN1, DSM 26816
P. sp. ST033148(HKI),
P. sp. ST032574(HKI), F113a,
P. sp. ST022286(HKI), F113, BI 11502, ...
P. sp. DSM 304, IMG 1591
P. sp. DSM 7450, CIP 63.28, LMG 2288 t1
P. sp. PWD36, DSM 11568
P. sp. PWD21, DSM 11570
P. sp. PWD13, DSM 11533
P. sp. PWD37, DSM 11534
P. sp. PWD39, DSM 11535
P. sp. PWD11, DSM 11562
P. sp. PWD26, DSM 11564
P. sp. PWD18, DSM 11591
P. sp. DSM 50421, ICPB 2372
P. sp. DSM 50428, ATCC 14878, ICPB 2883, ...
P. sp. DSM 28481, CN 12
P. sp. DSM 28512, CN 13
P. sp. UK4, DSM 29051
P. sp. D70, DSM 13133
P. sp. DS004, DSM 19477
P. sp. DSM 26096, SN 2
P. sp. SBV1, DSM 29543
P. sp. LD002, DSM 24571
P. sp. T2-2, DSM 102035
P. sp. Root9, DSM 102508
P. sp. Root71, DSM 102507
P. sp. Root329, DSM 102502
P. sp. Root401, DSM 102503
P. sp. Root562, DSM 102504
P. sp. Root569, DSM 102505
P. sp. Root68, DSM 102506
P. sp. Leaf434, DSM 102682
P. sp. Leaf58, DSM 102683
P. sp. Leaf59, DSM 102684
P. sp. Leaf83, DSM 102685
P. sp. Leaf48, DSM 102686
P. sp. Leaf127, DSM 102687
P. sp. Leaf129, DSM 102688
P. sp. Leaf15, DSM 102689
P. sp. Leaf98, DSM 102690
P. sp. PH 1b, PH1b, DSM 103278
P. sp. H1h, DSM 103280
P. sp. Isolate B, DSM 104484
P. sp. Isolate C, DSM 104485
P. sp. Isolate Sigma, DSM 104486
P. sp. CCUG 2070, NRRL B-2393, LMG 3502, ...
P. sp. CCUG 2476, ATCC 10838
P. sp. CCUG 2862
P. sp. CCUG 24530
P. sp. CCUG 24720
P. sp. CCUG 30091
P. sp. CCUG 31382
P. sp. CCUG 32010
P. sp. CCUG 32011
P. sp. CCUG 32192
P. sp. CCUG 32193
P. sp. CCUG 33495
P. sp. CCUG 33664
P. sp. CCUG 34576
P. sp. CCUG 34612
P. sp. CCUG 35079
P. sp. CCUG 35588
P. sp. CCUG 36634
P. sp. CCUG 36866
P. sp. CCUG 39260
P. sp. CCUG 41897 B
P. sp. CCUG 41986 A
P. sp. CCUG 49059
P. sp. CCUG 50150
P. sp. CCUG 56168
P. sp. CCUG 57051
P. sp. CCUG 57104, CBS 93
P. sp. CCUG 57337
P. sp. CCUG 58014
P. sp. CCUG 58749
P. sp. CCUG 58779
P. sp. CCUG 59393
P. sp. CCUG 59542
P. sp. CCUG 59817
P. sp. CCUG 61063
P. sp. CCUG 61232
P. sp. CCUG 61938
P. sp. CCUG 61939
P. sp. CCUG 66260
P. sp. CCUG 67000 Q
P. sp. IMI 347692
P. sp. IMI 353995
P. sp. IMI 354786
P. sp. AZ10, AZ10 UPM, DSM 27201
P. sp. 2b_C22, DSM 103908
P. sp. 2c_C26, DSM 103910
P. sp. 2e_C29, DSM 103996
P. sp. MR7, DSM 106634
P. sp. Stevenage 150518_C8, DSM 107788
P. sp. Stevenage 150518_C10, DSM 107790
P. sp. Stevenage 150518_C14, DSM 107795
P. sp. Ae12D2, DSM 24398
P. sp. St_C1, DSM 110307
P. sp. St_C2, DSM 110308
P. sp. St_C4, DSM 110310
P. sp. St_C5, DSM 110311
P. sp. JCM 10015, FERM P-13108
P. sp. JCM 10068
P. sp. JCM 10126
P. sp. JCM 10127
P. sp. JCM 10168
P. sp. JCM 10534
P. sp. JCM 13900
P. sp. JCM 16342, KCTC 22502
P. sp. JCM 17029
P. sp. JCM 17061
P. sp. JCM 17188
P. sp. JCM 17231, FERM P-9793, NBRC 107616
P. sp. JCM 17748
P. sp. JCM 17996, FERM P-19732
P. sp. JCM 19688
P. sp. JCM 20010, IAM 1015, OUT 8025
P. sp. JCM 20364, IAM 12036
P. sp. JCM 20427, IAM 12135, LMD 38.20, ...
P. sp. JCM 31323
P. sp. JCM 5405
P. sp. JCM 5406
P. sp. JCM 5415
P. sp. JCM 5439
P. sp. JCM 5455
P. sp. JCM 5463
P. sp. JCM 5465
P. sp. JCM 5470
P. sp. JCM 5471
P. sp. JCM 5480
P. sp. JCM 5481
P. sp. JCM 5482
P. sp. JCM 5484
P. sp. JCM 5493
P. sp. JCM 5494
P. sp. JCM 5495
P. sp. JCM 5496
P. sp. JCM 5497
P. sp. JCM 5498
P. sp. JCM 6160, ATCC 17633
P. sp. JCM 9490, ATCC 15926, BCRC 14938
P. sp. JCM 9790
P. sp. WS 5067, DSM 108988, LMG 31233
P. sp. WS 5096, DSM 111129, LMG 31864
P. sp. CIP 112024

Section

Pseudomonas sp. Clm is a mesophilic bacterium that was isolated from human stool.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Full Scientific Name (LPSN)	Pseudomonas Migula 1894 (Approved Lists 1980)

	Synonym	Serpens
	Synonym	Flavimonas
	Synonym	Stutzerimonas

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23682]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #23682]

Culture medium growth

[Ref.: #23682]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23682]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #23682]			growth	37 °C

[Ref.: #23682]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	-	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #23682]	23320	-	-	+	-	-	-	+	-	+	+	+	+	-	-	+	+	-	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23682]	Sample type/isolated from	human stool
[Ref.: #23682]	Country	Guyana
[Ref.: #23682]	Country ISO 3 Code	GUY
[Ref.: #23682]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Human	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23682]	Pseudomonas sp. CB1 partial 16S rRNA gene, isolate CB1	LK985396	1494	ENA	522492 tax ID

Availability in culture collections External links

[Ref.: #23682]

Culture collection no.

DSM 29075, CB 1

[Ref.: #90278]

SI-ID 404188

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Microbial Culturomics Application for Global Health: Noncontiguous Finished Genome Sequence and Description of Pseudomonas massiliensis Strain CB-1(T) sp. nov. in Brazil.	Bardet L, Cimmino T, Buffet C, Michelle C, Rathored J, Tandina F, Lagier JC, Khelaifia S, Abrahao J, Raoult D, Rolain JM	OMICS	10.1089/omi.2017.0027	2017	*
Enzymology	The purification and characterisation of 4-chlorobenzoate:CoA ligase and 4-chlorobenzoyl CoA dehalogenase from Arthrobacter sp. strain TM-1.	Zhou L, Marks TS, Poh RP, Smith RJ, Chowdhry BZ, Smith AR	Biodegradation	10.1023/b:biod.0000015614.94615.34	2004	*
Enzymology	Purification and characterization of 4-chlorobenzoyl CoA dehalogenase from Arthrobacter sp. strain 4-CB1.	Crooks GP, Copley SD	Biochemistry	10.1021/bi00204a028	1994	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23682

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29075

#68369

Automatically annotated from API 20NE .

#90278

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404188.1 )

* These data were automatically processed and therefore are not curated

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