Name: Pseudomonas sp. Root569
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131899

Type strain:

Species: Pseudomonas sp.

Strain Designation: Root569

Culture col. no.: DSM 102505

Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root569 <- Y. Bai

NCBI tax ID(s): 306 (species)

SI-ID 401904

DSM 102505

Special Collections

Other strains from Pseudomonas sp.

Section

Pseudomonas sp. Root569 is a motile bacterium that was isolated from roots of Arabidopsis thaliana ecotype Columbia-0 .

motile
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Full Scientific Name (LPSN)	Pseudomonas Migula 1894 (Approved Lists 1980)

	Synonym	Serpens
	Synonym	Flavimonas
	Synonym	Stutzerimonas

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99

[Ref.: #69480]	Motility	yes Confidence in %93.488

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23691]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #23691]

Culture medium growth

[Ref.: #23691]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23691]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #23691]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %93.891

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23691]	Sample type/isolated from	roots of Arabidopsis thaliana ecotype Columbia-0 (Col-0)
[Ref.: #23691]	Host species	Arabidopsis thaliana
[Ref.: #23691]	Geographic location (country and/or sea, region)	Cologne (50.958N 6.856E)
[Ref.: #23691]	Country	Germany
[Ref.: #23691]	Country ISO 3 Code	DEU
[Ref.: #23691]	Continent	Europe
[Ref.: #23691]	Geographic location	50.9580°/6.8560°
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudomonas sp. Root569	GCA_001427465	scaffold	GenBank ENA	1736566 tax ID	*
[Ref.: #66792]	Pseudomonas sp. Root569	1736566.3	wgs	PATRIC	1736566 tax ID	*
[Ref.: #66792]	Pseudomonas sp. Root569	2643221571	draft	JGI IMG/M	1736566 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudomonas sp. Root569 Root569 NCBI: GCA_001427465.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.851	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	93.891	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	85.55	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	93.488	no

Availability in culture collections External links

[Ref.: #23691]

Culture collection no.

DSM 102505

[Ref.: #90286]

SI-ID 401904

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23691

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102505

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90286

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401904.1 )

* These data were automatically processed and therefore are not curated

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Pseudomonas sp. Root569 Root569

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