Cite this strain

Pseudomonas sp. (JCM 5406)

Name: Pseudomonas sp. (JCM 5406)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 165189

Type strain

Culture col. no. JCM 5406

NCBI tax ID(s) 1118453

Special Collections JCM

History JCM <-- P.-P. Chang 45 <-- Y. Kokubo 6.

Links

JCM 5406 is a bacterium that was isolated from Pork.

16S sequence Bacteria

Name and taxonomic classification

SI-ID 131641

JCM 5406

@ref 20215

Last LPSN update 2026-05-29 08:45:35

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Full scientific name Pseudomonas Migula 1894 (Approved Lists 1980)

Synonyms (9)

Metapseudomonas
Zestomonas
"Caenipseudomonas"
Phytopseudomonas
Ectopseudomonas
Aquipseudomonas
Geopseudomonas
Flavimonas
Chryseomonas

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	30

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

67770

Sample typePork

Taxonmaps

69479

Global distribution of 16S sequence AB685619 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	976
Soil Samples	555
Animal Samples	2173
Plant Samples	1759
Total Samples	5463

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Pseudomonas sp. JCM 5406 gene for 16S ribosomal RNA, partial sequence	AB685619	1459		1118453

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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