Pseudomonas sp. (DSM 6426, CCUG 54619, Ch1)

Name: Pseudomonas sp. (DSM 6426, CCUG 54619, Ch1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 12950

Type strain

Strain Designation Ch1

Culture col. no. DSM 6426 CCUG 54619 Ch1

NCBI tax ID(s) 348778

Special Collections DSMZ CCUG

History <- J.R. Andreesen <- A. Kretzer; Ch1

Links

Ch1 is a mesophilic prokaryote that was isolated from waste water.

mesophilic 16S sequence

Name and taxonomic classification

SI-ID 48193

DSM 6426,CCUG 54619

@ref 20215

Last LPSN update 2026-02-09 11:20:59

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Full scientific name Pseudomonas Migula 1894 (Approved Lists 1980)

Synonyms (9)

Chryseomonas
Metapseudomonas
Zestomonas
"Caenipseudomonas"
Phytopseudomonas
Ectopseudomonas
Aquipseudomonas
Geopseudomonas
Flavimonas

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
2663	MINERAL MEDIUM WITH QUINOLINE (DSMZ Medium 461a)		Medium recipe at MediaDive	Name: MINERAL MEDIUM WITH QUINOLINE (DSMZ Medium 461a) Composition: Na2HPO4 x 2 H2O 1.31032 g/l MgSO4 x 7 H2O 0.451835 g/l Quinoline 0.272727 g/l NH4Cl 0.271101 g/l KH2PO4 0.225917 g/l NaCl 0.0451835 g/l CaCl2 0.00903669 g/l MnSO4 0.00903669 g/l HCl 0.00225917 g/l FeCl2 x 4 H2O 0.0013555 g/l Pantothenic acid 0.000225917 g/l Vitamin B12 0.000225917 g/l Riboflavin 0.000225917 g/l alpha-lipoic acid 0.000225917 g/l p-Aminobenzoic acid 0.000225917 g/l Thiamine-HCl x 2 H2O 0.000225917 g/l CoCl2 x 6 H2O 0.000171697 g/l Nicotine amide 0.000112959 g/l Nicotinic acid 0.000112959 g/l Biotin 9.03669e-05 g/l Folic acid 9.03669e-05 g/l MnCl2 x 4 H2O 9.03669e-05 g/l ZnCl2 6.32568e-05 g/l Pyridoxamine hydrochloride 4.51834e-05 g/l Na2MoO4 x 2 H2O 3.25321e-05 g/l NiCl2 x 6 H2O 2.16881e-05 g/l H3BO3 5.42201e-06 g/l CuCl2 x 2 H2O 1.80734e-06 g/l Phosphate buffer Distilled water
2663	REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)		Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
2663	positive	growth	30	mesophilic

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	+	assimilation	from API 20NE
68369	29016 ChEBI	arginine	+	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	+	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68369	gelatinase	-		from API 20NE
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
68382	trypsin	-	3.4.21.4	from API zym
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
60261	-	+	+	+	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
60261	+	-	-	+	-	-	-	-	+	-	-	-	-	-	+	+	+	+	+	+	+
2663	+	-	-	+	-	-	-	-	+	-	-	-	-	-	+	+	+	+	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Wastewater

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
2663	waste water	Göttingen	Germany	DEU	Europe
60261	Waste water		Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence AM088477 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	2237
Soil Samples	862
Animal Samples	2039
Plant Samples	598
Total Samples	5736

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
2663	Pseudomonas sp. Ch1 partial 16S rRNA gene, strain DSM 6426	AM088477	1515		348778

Genome-based predictions

Literature

References

#2663	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6426
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#60261	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54619
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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