Name: Pseudomonas kribbensis 46-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131891

Type strain:

Species: Pseudomonas kribbensis

Strain Designation: 46-2

Culture col. no.: DSM 100278, KCTC 32541

Strain history: <- Seung Gu LEE (KRIBB, Korea)

NCBI tax ID(s): 1628086 (species)

Section

Pseudomonas kribbensis 46-2 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from garden soil.

Gram-negative
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	"Pseudomonas kribbensis"
	Full Scientific Name (LPSN)	Pseudomonas kribbensis Chang et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.996

[Ref.: #69480]	Motility	yes Confidence in %97.944

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23683]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #23683]

Culture medium growth

[Ref.: #23683]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23683]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #23683]			growth	28 °C
[Ref.: #67771]			growth	30 °C

[Ref.: #23683]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.983

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23683]	Sample type/isolated from	garden soil
[Ref.: #23683]	Geographic location (country and/or sea, region)	Daejeon, gardens of the Korea Research Institute of Bioscience and Biotechnology (KRIBB)
[Ref.: #23683]	Country	Republic of Korea
[Ref.: #23683]	Country ISO 3 Code	KOR
[Ref.: #23683]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	Soil (Daejeon)
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Garden

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT321658 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	448
Soil Samples	833
Animal Samples	521
Plant Samples	662
Total Samples	2464

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23683]	Pseudomonas sp. 46-2 16S ribosomal RNA gene, partial sequence	KT321658	1492	ENA	1628086 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudomonas kribbensis 46-2	GCA_003352185	complete	GenBank	1628086 tax ID	*
[Ref.: #66792]	Pseudomonas kribbensis strain 46-2	1628086.3	complete	PATRIC	1628086 tax ID	*
[Ref.: #66792]	Pseudomonas kribbensis 46-2	2917051905	complete	JGI IMG/M	1628086 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudomonas kribbensis 46-2 NCBI: GCA_003352185.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudomonas kribbensis 46-2 NCBI: GCA_003352185.1
[Ref.: #69480]	motile	yes	91.562	no
[Ref.: #69480]	flagellated	yes	84.309	no
[Ref.: #69480]	gram-positive	no	98.067	no
[Ref.: #69480]	anaerobic	no	98.112	yes
[Ref.: #69480]	aerobic	yes	94.485	yes
[Ref.: #69480]	halophile	no	89.967	no
[Ref.: #69480]	spore-forming	no	94.883	no
[Ref.: #69480]	glucose-util	yes	95.354	no
[Ref.: #69480]	thermophile	no	99.857	yes
[Ref.: #69480]	glucose-ferment	no	89.753	no

Availability in culture collections External links

[Ref.: #23683]

Culture collection no.

DSM 100278, KCTC 32541

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudomonas glycinae sp. nov. isolated from the soybean rhizosphere.	Jia J, Wang X, Deng P, Ma L, Baird SM, Li X, Lu SE	Microbiologyopen	10.1002/mbo3.1101	2020	*
Genetics	Complete Genome Sequence of the Soil Bacterium Pseudomonas kribbensis Strain 46-2(T).	Jeong H, Rha E, Kim H, Lee SG	Microbiol Resour Announc	10.1128/MRA.01161-18	2018	*
Phylogeny	Pseudomonas kribbensis sp. nov., isolated from garden soils in Daejeon, Korea.	Chang DH, Rhee MS, Kim JS, Lee Y, Park MY, Kim H, Lee SG, Kim BC	Antonie Van Leeuwenhoek	10.1007/s10482-016-0743-0	2016	*
Phylogeny	Pseudomonas fitomaticsae sp. nov., isolated at Marimurtra Botanical Garden in Blanes, Catalonia, Spain.	Atanasov KE, Galbis DM, Cornado D, Serpico A, Sanchez G, Bosch M, Ferrer A, Altabella T	Int J Syst Evol Microbiol	10.1099/ijsem.0.005557	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23683

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100278

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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