Name: Pseudomonas stutzeri KMM 235
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 13015

Type strain:

Species: Pseudomonas stutzeri

Culture col. no.: KMM 235, DSM 22786, CCUG 46542

Strain history: <- CCUG <- L. A. Romanenko, KMM Vladivostok

NCBI tax ID(s): 203192 (species), 1211807 (species), 316 (species)

SI-ID 131489

CCUG 46542

Special Collections

DSMZ
CCUG

Other strains from Pseudomonas stutzeri

Section

Pseudomonas stutzeri KMM 235 is an aerobe, Gram-negative human pathogen that was isolated from ascidian Didemnum sp..

Gram-negative
aerobe
human pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas stutzeri**
	Full Scientific Name (LPSN)	Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946 (Approved Lists 1980)

	Synonym	Stutzerimonas chloritidismutans
	Synonym	"Pseudomonas* perfectomarinus"*
	Synonym	"Bacterium* stutzeri"*
	Synonym	Pseudomonas kunmingensis
	Synonym	Pseudomonas chloritidismutans
	Synonym	Stutzerimonas kunmingensis
	Synonym	Stutzerimonas stutzeri
	Synonym	Stutzerimonas perfectomarina
	Synonym	Pseudomonas perfectomarina

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.5

[Ref.: #69480]	Motility	yes Confidence in %90.784

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16517]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #16517]

Culture medium growth

[Ref.: #16517]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16517]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16517]			growth	28 °C
[Ref.: #57256]			growth	30-37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #57256]	Oxygen tolerance	aerobe
[Ref.: #69480]	Oxygen tolerance	aerobe Confidence in %91.618

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #57256]

Fatty acid	Percentage	ECL
C16:1 ω7c	33.2	15.819
C18:1 ω7c /12t/9t	29.8	17.824
C16:0	17.5	16
C12:0	9.7	12
C10:0 3OH	4.5	11.423
C12:0 3OH	2.9	13.455
C14:0	1	14
C18:2 ω6,9c/C18:0 ANTE	0.4	17.724
C10:0	0.3	10
C18:0	0.3	18
C17:0 iso	0.2	16.629
unknown 11.798	0.2	11.798

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #16517]	23095	+	-	-	-	-	-	-	-	+	-	-	+	-	+	-	+	+	+	+	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16517]	Sample type/isolated from	ascidian Didemnum sp.
[Ref.: #16517]	Host species	Didemnum
[Ref.: #16517]	Country	Maldives
[Ref.: #16517]	Country ISO 3 Code	MDV
[Ref.: #16517]	Continent	Asia

[Ref.: #57256]	Sample type/isolated from	Ascidian (Didemnum sp.)
[Ref.: #57256]	Sampling date	1988-04-01
[Ref.: #57256]	Geographic location (country and/or sea, region)	Maldives coastal waters
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Tunicata

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB176955 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	380
Soil Samples	126
Animal Samples	321
Plant Samples	49
Total Samples	876

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16517]	Pathogenicity (human)	yes, in single cases
[Ref.: #16517]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16517]	Pseudomonas stutzeri gene for 16S rRNA, partial sequence	AB176955	1443	GenBank ENA	316 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Stutzerimonas stutzeri CCUG 46542	GCA_024448345	contig	GenBank ENA	316 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Stutzerimonas stutzeri CCUG 46542 NCBI: GCA_024448345.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.881	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	91.618	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	84.48	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.857	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	90.784	no

Availability in culture collections External links

[Ref.: #16517]

Culture collection no.

KMM 235, DSM 22786, CCUG 46542

[Ref.: #82225]

SI-ID 131489

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudomonas xanthomarina sp. nov., a novel bacterium isolated from marine ascidian.	Romanenko LA, Uchino M, Falsen E, Lysenko AM, Zhukova NV, Mikhailov VV	J Gen Appl Microbiol	10.2323/jgam.51.65	2005	*

References

#16517

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22786

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#57256 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 46542

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#82225

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID131489.1 )

* These data were automatically processed and therefore are not curated

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Stutzerimonas stutzeri CCUG 46542

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