Name: Pseudomonas stutzeri DSM 103613
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131912

Type strain:

Species: Pseudomonas stutzeri

Culture col. no.: DSM 103613, Chol 1

Strain history: <- B. Philipp, Univ. Münster, Germany; Chol1

NCBI tax ID(s): 203192 (species), 316 (species)

SI-ID 407521

DSM 103613

Other strains from Pseudomonas stutzeri

P. stutzeri 221, AB 201, DSM 5190, ATCC 17588, ... (type strain)
P. stutzeri CMT.9.A, DSM 4166
P. stutzeri DNSP21, DSM 6082, LMG 18520, CIP ...
P. stutzeri 19SMN4, DSM 6084, LMG 18521, CIP ...
P. stutzeri KC, DSM 7136, CIP 107462, ATCC ...
P. stutzeri 1465, DSM 8219
P. stutzeri JM300, DSM 10701, JCM 21571, IAM ...
P. stutzeri 320, 62-HA, DSM 13627, ATCC 17686, ...
P. stutzeri AW-1, DSM 13592, KCTC 12116, CCUG ...
P. stutzeri 4C29, DSM 17082, CCUG 50538
P. stutzeri 24a13, DSM 17083, CCUG 50539
P. stutzeri 24a75, DSM 17084, CCUG 50540
P. stutzeri MT-1, DSM 17085, CCUG 50545
P. stutzeri 28a3, DSM 17086, CCUG 50541
P. stutzeri 28a22, DSM 17087, CCUG 50542
P. stutzeri 28a39, DSM 17088, CCUG 50543
P. stutzeri 28a50, DSM 17089, CCUG 50544
P. stutzeri No. 3, DSM 46326, CCM 2896, IMET ...
P. stutzeri MD 41.1, CCUG 711, NRRL B-927, ...
P. stutzeri 419, DSM 50238, ATCC 17832, ICPB ...
P. stutzeri KMM 235, DSM 22786, CCUG 46542
P. stutzeri STI09279(IMET), LA83, IFO 14916, ...
P. stutzeri ST-9, DSM 24582, CCUG 62911
P. stutzeri DSM 26095, SN 1
P. stutzeri CIP 107697, CCUG 29243
P. stutzeri ST27MN3, CIP 107698, CCUG 29246
P. stutzeri 698.84, CIP 101092
P. stutzeri CIP 107694, CCUG 29245
P. stutzeri A1501, CIP 109869
P. stutzeri CIP 107689, CCUG 44592, ATCC 17591
P. stutzeri CIP 107699, CCUG 44597
P. stutzeri CIP 107693, CCUG 29241
P. stutzeri CIP 105845
P. stutzeri X 44, CIP 67.15
P. stutzeri Brochard, CIP 67.2
P. stutzeri 247.B.67, CIP 67.10
P. stutzeri X42, CIP 67.14
P. stutzeri X 66, CIP 67.16
P. stutzeri X 78, CIP 67.17
P. stutzeri 632, CIP 107696, CCUG 16156, ATCC ...
P. stutzeri 270.83, CIP 100185
P. stutzeri 700.84, CIP 101120
P. stutzeri 811-85, CIP 101928
P. stutzeri CIP 107695, CCUG 29240
P. stutzeri CCUG 227, NCTC 10450
P. stutzeri CCUG 10051 A
P. stutzeri CCUG 13698
P. stutzeri CCUG 15428
P. stutzeri CCUG 15701
P. stutzeri CCUG 17735
P. stutzeri CCUG 17998
P. stutzeri CCUG 17999
P. stutzeri CCUG 18414
P. stutzeri CCUG 28614
P. stutzeri CCUG 29242
P. stutzeri CCUG 29244
P. stutzeri CCUG 29580
P. stutzeri CCUG 30337
P. stutzeri CCUG 31049
P. stutzeri CCUG 31374
P. stutzeri CCUG 32013, CCM 4667
P. stutzeri CCUG 34603
P. stutzeri CCUG 34850
P. stutzeri CCUG 36651
P. stutzeri CCUG 36965
P. stutzeri CCUG 38519
P. stutzeri CCUG 38800
P. stutzeri CCUG 39270
P. stutzeri CCUG 44821
P. stutzeri CCUG 44951
P. stutzeri CCUG 49723
P. stutzeri CCUG 53952
P. stutzeri CCUG 55800
P. stutzeri CCUG 58289
P. stutzeri IMI 349022
P. stutzeri IMI 358535
P. stutzeri JCM 10067
P. stutzeri JCM 10069
P. stutzeri JCM 16566
P. stutzeri JCM 20400, IAM 12097, IFO 13596, ...
P. stutzeri JCM 21306, IAM 14761
P. stutzeri JCM 30558
P. stutzeri JCM 9788
P. stutzeri CIMB 05-0536, CRBIP17.138

Section

Pseudomonas stutzeri DSM 103613 is a mesophilic human pathogen that was isolated from Soil sample from meadow.

human pathogen
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas stutzeri**
	Full Scientific Name (LPSN)	Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946 (Approved Lists 1980)

	Synonym	Stutzerimonas chloritidismutans
	Synonym	"Pseudomonas* perfectomarinus"*
	Synonym	"Bacterium* stutzeri"*
	Synonym	Pseudomonas kunmingensis
	Synonym	Pseudomonas chloritidismutans
	Synonym	Stutzerimonas kunmingensis
	Synonym	Stutzerimonas stutzeri
	Synonym	Stutzerimonas perfectomarina
	Synonym	Pseudomonas perfectomarina

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23704]

Culture medium

MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457)

[Ref.: #23704]

Culture medium growth

[Ref.: #23704]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23704]

Culture medium composition

expand / minimize

[Ref.: #23704]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #23704]

Culture medium growth

[Ref.: #23704]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23704]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #23704]			growth	28 °C

[Ref.: #23704]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23704]	Name of produced compound	hydratase
[Ref.: #23704]	Name of produced compound	aldehyde reductase

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #23704]	24635	+	-	-	-	-	-	-	-	+	-	-	-	-	+	-	+	-	+	+	-	+
[Ref.: #23704]	24488	+	-	-	-	-	-	-	-	+	-	-	-	-	+	-	+	-	+	+	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23704]	Sample type/isolated from	Soil sample from meadow
[Ref.: #23704]	Geographic location (country and/or sea, region)	Konstanz, Hockgraben
[Ref.: #23704]	Country	Germany
[Ref.: #23704]	Country ISO 3 Code	DEU
[Ref.: #23704]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Meadow
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY727863 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	520
Soil Samples	220
Animal Samples	534
Plant Samples	54
Total Samples	1328

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #23704]	Pathogenicity (human)	yes, in single cases
[Ref.: #23704]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23704]	Pseudomonas stutzeri strain Chol1a 16S ribosomal RNA gene, partial sequence	AY727863	1423	ENA	316 tax ID

Availability in culture collections External links

[Ref.: #23704]

Culture collection no.

DSM 103613, Chol 1

[Ref.: #90299]

SI-ID 407521

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Investigations on the Degradation of the Bile Salt Cholate via the 9,10-Seco-Pathway Reveals the Formation of a Novel Recalcitrant Steroid Compound by a Side Reaction in Sphingobium sp. Strain Chol11.	Feller FM, Eilebrecht S, Nedielkov R, Yucel O, Alvincz J, Salinas G, Ludwig KC, Moller H, Philipp B	Microorganisms	10.3390/microorganisms9102146	2021	*
Metabolism	Comparative Analysis of Bile-Salt Degradation in Sphingobium sp. Strain Chol11 and Pseudomonas stutzeri Strain Chol1 Reveals Functional Diversity of Proteobacterial Steroid Degradation Enzymes and Suggests a Novel Pathway for Side Chain Degradation.	Feller FM, Richtsmeier P, Wege M, Philipp B	Appl Environ Microbiol	10.1128/AEM.01453-21	2021	*
Metabolism	The 7alpha-hydroxysteroid dehydratase Hsh2 is essential for anaerobic degradation of the steroid skeleton of 7alpha-hydroxyl bile salts in the novel denitrifying bacterium Azoarcus sp. strain Aa7.	Yucel O, Borgert SR, Poehlein A, Niermann K, Philipp B	Environ Microbiol	10.1111/1462-2920.14508	2019	*
Metabolism	A Novel Steroid-Coenzyme A Ligase from Novosphingobium sp. Strain Chol11 Is Essential for an Alternative Degradation Pathway for Bile Salts.	Yucel O, Holert J, Ludwig KC, Thierbach S, Philipp B	Appl Environ Microbiol	10.1128/AEM.01492-17	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23704

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103613

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#90299

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407521.1 )

* These data were automatically processed and therefore are not curated

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