Name: Pseudomonas stutzeri 4C29
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13004

Type strain:

Species: Pseudomonas stutzeri

Strain Designation: 4C29

Culture col. no.: DSM 17082, CCUG 50538

Strain history: <- J. Sikorski; 4C29

NCBI tax ID(s): 203192 (species), 316 (species)

SI-ID 214499

CCUG 50538, DSM 17082

Other strains from Pseudomonas stutzeri

P. stutzeri 221, AB 201, DSM 5190, ATCC 17588, ... (type strain)
P. stutzeri CMT.9.A, DSM 4166
P. stutzeri DNSP21, DSM 6082, LMG 18520, CIP ...
P. stutzeri 19SMN4, DSM 6084, LMG 18521, CIP ...
P. stutzeri KC, DSM 7136, CIP 107462, ATCC ...
P. stutzeri 1465, DSM 8219
P. stutzeri JM300, DSM 10701, JCM 21571, IAM ...
P. stutzeri 320, 62-HA, DSM 13627, ATCC 17686, ...
P. stutzeri AW-1, DSM 13592, KCTC 12116, CCUG ...
P. stutzeri 24a13, DSM 17083, CCUG 50539
P. stutzeri 24a75, DSM 17084, CCUG 50540
P. stutzeri MT-1, DSM 17085, CCUG 50545
P. stutzeri 28a3, DSM 17086, CCUG 50541
P. stutzeri 28a22, DSM 17087, CCUG 50542
P. stutzeri 28a39, DSM 17088, CCUG 50543
P. stutzeri 28a50, DSM 17089, CCUG 50544
P. stutzeri No. 3, DSM 46326, CCM 2896, IMET ...
P. stutzeri MD 41.1, CCUG 711, NRRL B-927, ...
P. stutzeri 419, DSM 50238, ATCC 17832, ICPB ...
P. stutzeri KMM 235, DSM 22786, CCUG 46542
P. stutzeri STI09279(IMET), LA83, IFO 14916, ...
P. stutzeri ST-9, DSM 24582, CCUG 62911
P. stutzeri DSM 26095, SN 1
P. stutzeri DSM 103613, Chol 1
P. stutzeri CIP 107697, CCUG 29243
P. stutzeri ST27MN3, CIP 107698, CCUG 29246
P. stutzeri 698.84, CIP 101092
P. stutzeri CIP 107694, CCUG 29245
P. stutzeri A1501, CIP 109869
P. stutzeri CIP 107689, CCUG 44592, ATCC 17591
P. stutzeri CIP 107699, CCUG 44597
P. stutzeri CIP 107693, CCUG 29241
P. stutzeri CIP 105845
P. stutzeri X 44, CIP 67.15
P. stutzeri Brochard, CIP 67.2
P. stutzeri 247.B.67, CIP 67.10
P. stutzeri X42, CIP 67.14
P. stutzeri X 66, CIP 67.16
P. stutzeri X 78, CIP 67.17
P. stutzeri 632, CIP 107696, CCUG 16156, ATCC ...
P. stutzeri 270.83, CIP 100185
P. stutzeri 700.84, CIP 101120
P. stutzeri 811-85, CIP 101928
P. stutzeri CIP 107695, CCUG 29240
P. stutzeri CCUG 227, NCTC 10450
P. stutzeri CCUG 10051 A
P. stutzeri CCUG 13698
P. stutzeri CCUG 15428
P. stutzeri CCUG 15701
P. stutzeri CCUG 17735
P. stutzeri CCUG 17998
P. stutzeri CCUG 17999
P. stutzeri CCUG 18414
P. stutzeri CCUG 28614
P. stutzeri CCUG 29242
P. stutzeri CCUG 29244
P. stutzeri CCUG 29580
P. stutzeri CCUG 30337
P. stutzeri CCUG 31049
P. stutzeri CCUG 31374
P. stutzeri CCUG 32013, CCM 4667
P. stutzeri CCUG 34603
P. stutzeri CCUG 34850
P. stutzeri CCUG 36651
P. stutzeri CCUG 36965
P. stutzeri CCUG 38519
P. stutzeri CCUG 38800
P. stutzeri CCUG 39270
P. stutzeri CCUG 44821
P. stutzeri CCUG 44951
P. stutzeri CCUG 49723
P. stutzeri CCUG 53952
P. stutzeri CCUG 55800
P. stutzeri CCUG 58289
P. stutzeri IMI 349022
P. stutzeri IMI 358535
P. stutzeri JCM 10067
P. stutzeri JCM 10069
P. stutzeri JCM 16566
P. stutzeri JCM 20400, IAM 12097, IFO 13596, ...
P. stutzeri JCM 21306, IAM 14761
P. stutzeri JCM 30558
P. stutzeri JCM 9788
P. stutzeri CIMB 05-0536, CRBIP17.138

Section

Pseudomonas stutzeri 4C29 is an aerobe, mesophilic, motile human pathogen that was isolated from wadden sea sediment.

motile
aerobe
human pathogen
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas stutzeri**
	Full Scientific Name (LPSN)	Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946 (Approved Lists 1980)

	Synonym	Stutzerimonas chloritidismutans
	Synonym	"Pseudomonas* perfectomarinus"*
	Synonym	"Bacterium* stutzeri"*
	Synonym	Pseudomonas kunmingensis
	Synonym	Pseudomonas chloritidismutans
	Synonym	Stutzerimonas kunmingensis
	Synonym	Stutzerimonas stutzeri
	Synonym	Stutzerimonas perfectomarina
	Synonym	Pseudomonas perfectomarina

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #69480]	Motility	yes Confidence in %98.365

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6744]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #6744]

Culture medium growth

[Ref.: #6744]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6744]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6744]			growth	30 °C
[Ref.: #58897]			growth	30-37 °C

[Ref.: #6744]	Temperature range	mesophilic
[Ref.: #58897]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #58897]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.987

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE, API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #58897]

Fatty acid	Percentage	ECL
C16:1 ω7c	35	15.819
C18:1 ω7c /12t/9t	27	17.824
C16:0	18.5	16
C12:0	8.5	12
C10:0 3OH	3.9	11.423
C12:0 3OH	2.3	13.455
C14:0	1.4	14
C13:0 ISO 2OH	0.8	13.814
Unidentified	0.5	15.269
C15:0	0.4	15
C17:0 iso	0.4	16.629
C19:0 CYCLO ω8c	0.3	18.9
C18:2 ω6,9c/C18:0 ANTE	0.2	17.724
C18:1 ω9c	0.2	17.769
C17:1 ω8c	0.2	16.792
C10:0	0.2	10
C11:0 ISO 3OH	0.2	12.09
C13:0 iso	0.1	12.612
unknown 11.798	0.1	11.798

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #58897]	8288	+	-	-	-	-	-	-	-	+	-	-	+	-	-	+	-	+	+	-	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #58897]	4254	-	+	+	+	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6744]	Sample type/isolated from	wadden sea sediment
[Ref.: #6744]	Geographic location (country and/or sea, region)	Dangast, North Sea coast
[Ref.: #6744]	Country	Germany
[Ref.: #6744]	Country ISO 3 Code	DEU
[Ref.: #6744]	Continent	Europe

[Ref.: #58897]	Sample type/isolated from	Wadden sea sediment
[Ref.: #58897]	Sampling date	1999-09-01
[Ref.: #58897]	Geographic location (country and/or sea, region)	Dangast,North Sea coast
[Ref.: #58897]	Country	Germany
[Ref.: #58897]	Country ISO 3 Code	DEU
[Ref.: #58897]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Tidal flat

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6744]	Pathogenicity (human)	yes, in single cases
[Ref.: #6744]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Stutzerimonas stutzeri 4C29	GCA_002890895	contig	GenBank	316 tax ID	*
[Ref.: #66792]	Pseudomonas stutzeri strain 4C29	316.368	wgs	PATRIC	316 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudomonas stutzeri strain 4C29 PATRIC: 316.368
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudomonas stutzeri strain 4C29 PATRIC: 316.368
[Ref.: #69480]	gram-positive	no	98.796	no
[Ref.: #69480]	anaerobic	no	96.69	no
[Ref.: #69480]	halophile	no	83.101	no
[Ref.: #69480]	spore-forming	no	95.771	no
[Ref.: #69480]	glucose-util	yes	89.872	yes
[Ref.: #69480]	motile	yes	89.896	no
[Ref.: #69480]	flagellated	yes	83.322	no
[Ref.: #69480]	aerobic	yes	93.052	yes
[Ref.: #69480]	thermophile	no	99.781	yes
[Ref.: #69480]	glucose-ferment	no	93.066	yes

Availability in culture collections External links

[Ref.: #6744]

Culture collection no.

DSM 17082, CCUG 50538

[Ref.: #82214]

SI-ID 214499

References

#6744

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17082

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#58897 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 50538

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82214

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID214499.1 )

* These data were automatically processed and therefore are not curated

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Pseudomonas stutzeri strain 4C29

Pseudomonas stutzeri strain 4C29

Change proposal

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