Name: Pseudomonas stutzeri CMT.9.A
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 12995

Type strain:

Species: Pseudomonas stutzeri

Strain Designation: CMT.9.A

Culture col. no.: DSM 4166

Strain history: <- D. Werner; CMT.9.A

NCBI tax ID(s): 996285 (strain), 203192 (species), 316 (species)

Other strains from Pseudomonas stutzeri

Section

Pseudomonas stutzeri CMT.9.A is a mesophilic human pathogen that was isolated from rhizosphere of Sorghum mutans cv. CSV5.

human pathogen
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas stutzeri**
	Full Scientific Name (PNU)	Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946 (Approved Lists 1980)

	Synonym	Stutzerimonas chloritidismutans
	Synonym	"Pseudomonas* perfectomarinus"*
	Synonym	"Bacterium* stutzeri"*
	Synonym	Pseudomonas kunmingensis
	Synonym	Pseudomonas chloritidismutans
	Synonym	Stutzerimonas kunmingensis
	Synonym	Stutzerimonas stutzeri
	Synonym	"Stutzerimonas* perfectomarina"*
	Synonym	Pseudomonas perfectomarina

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %98.735

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1605]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #1605]

Culture medium growth

[Ref.: #1605]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #1605]

Culture medium composition

expand / minimize

[Ref.: #1605]

Culture medium

NITROGEN-FREE MEDIUM FOR PSEUDOMONAS STUTZERI (DSMZ Medium 460)

[Ref.: #1605]

Culture medium growth

[Ref.: #1605]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #1605]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1605]			growth	30 °C

[Ref.: #1605]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996

[Ref.: #1605]

Name of produced compound

nitrogenase

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #68369]		indole ChEBI	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #1605]	20443	+	-	-	-	-	-	-	-	+	-	-	+	-	+	+	+	-	+	-	-	+
[Ref.: #1605]	22774	+	-	-	-	-	-	-	-	+	-	-	+	-	+	+	+	-	+	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1605]	Sample type/isolated from	rhizosphere of Sorghum mutans cv. CSV5
[Ref.: #1605]	Host species	Sorghum mutans
[Ref.: #1605]	Country	India
[Ref.: #1605]	Country ISO 3 Code	IND
[Ref.: #1605]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1605]	Pathogenicity (human)	yes, in single cases
[Ref.: #1605]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudomonas stutzeri DSM 4166 DSM 4166	GCA_000195105	complete	GenBank	996285 tax ID	*
[Ref.: #66792]	Pseudomonas stutzeri DSM 4166	996285.3	complete	PATRIC	996285 tax ID	*
[Ref.: #66792]	Pseudomonas stutzeri CMT.A.9, DSM 4166	651053060	complete	JGI IMG/M	996285 tax ID	*

[Ref.: #1605]

GC-content

66.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudomonas stutzeri DSM 4166 PATRIC: 996285.3
[Ref.: #69480]	anaerobic	no	93.81	no
[Ref.: #69480]	gram-positive	no	100	yes
[Ref.: #69480]	spore-forming	no	99.996	no
[Ref.: #69480]	thermophile	no	99.901	yes
[Ref.: #69480]	motile	yes	98.735	yes

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudomonas stutzeri DSM 4166 PATRIC: 996285.3
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #1605]

Culture collection no.

DSM 4166

[Ref.: #20218]

Associated Passport(s) in StrainInfo

158673

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Engineering Pseudomonas protegens Pf-5 to improve its antifungal activity and nitrogen fixation.	Jing X, Cui Q, Li X, Yin J, Ravichandran V, Pan D, Fu J, Tu Q, Wang H, Bian X, Zhang Y	Microb Biotechnol	10.1111/1751-7915.13335	2018	*
Metabolism	Identification of extracellular glycerophosphodiesterases in Pseudomonas and their role in soil organic phosphorus remineralisation.	Lidbury IDEA, Murphy ARJ, Fraser TD, Bending GD, Jones AME, Moore JD, Goodall A, Tibbett M, Hammond JP, Scanlan DJ, Wellington EMH	Sci Rep	10.1038/s41598-017-02327-6	2017	*
Metabolism	Comparative genomic, proteomic and exoproteomic analyses of three Pseudomonas strains reveals novel insights into the phosphorus scavenging capabilities of soil bacteria.	Lidbury ID, Murphy AR, Scanlan DJ, Bending GD, Jones AM, Moore JD, Goodall A, Hammond JP, Wellington EM	Environ Microbiol	10.1111/1462-2920.13390	2016	*
Phylogeny	The nitrogen-fixation island insertion site is conserved in diazotrophic Pseudomonas stutzeri and Pseudomonas sp. isolated from distal and close geographical regions.	Venieraki A, Dimou M, Vezyri E, Vamvakas A, Katinaki PA, Chatzipavlidis I, Tampakaki A, Katinakis P	PLoS One	10.1371/journal.pone.0105837	2014	*
Enzymology	Monoterpenes with antibacterial activities from a Cameroonian medicinal plant Canthium Multiflorum (Rubiaceae).	Kouam SF, Ngouonpe AW, Bullach A, Lamshoft M, Kuigoua GM, Spiteller M	Fitoterapia	10.1016/j.fitote.2013.08.025	2013	*
Enzymology	Characterization of Halomonas sp. strain H11 alpha-glucosidase activated by monovalent cations and its application for efficient synthesis of alpha-D-glucosylglycerol.	Ojima T, Saburi W, Yamamoto T, Kudo T	Appl Environ Microbiol	10.1128/AEM.07514-11	2012	*
Genetics	Complete genome sequence of the nitrogen-fixing and rhizosphere-associated bacterium Pseudomonas stutzeri strain DSM4166.	Yu H, Yuan M, Lu W, Yang J, Dai S, Li Q, Yang Z, Dong J, Sun L, Deng Z, Zhang W, Chen M, Ping S, Han Y, Zhan Y, Yan Y, Jin Q, Lin M	J Bacteriol	10.1128/JB.05039-11	2011	*

References

#1605

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4166

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Pseudomonas stutzeri in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Pseudomonas stutzeri DSM 4166

Pseudomonas stutzeri DSM 4166

Change proposal

Change proposal