Strain identifier
BacDive ID: 131912
Type strain:
Species: Pseudomonas stutzeri
Strain history: <- B. Philipp, Univ. Münster, Germany; Chol1
NCBI tax ID(s): 203192 (species), 316 (species)
General
@ref: 23704
BacDive-ID: 131912
DSM-Number: 103613
keywords: 16S sequence, Bacteria, mesophilic, human pathogen
description: Pseudomonas stutzeri DSM 103613 is a mesophilic human pathogen that was isolated from Soil sample from meadow.
NCBI tax id
NCBI tax id | Matching level |
---|---|
203192 | species |
316 | species |
strain history
- @ref: 23704
- history: <- B. Philipp, Univ. Münster, Germany; Chol1
doi: 10.13145/bacdive131912.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas stutzeri
- full scientific name: Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946 (Approved Lists 1980)
synonyms
@ref synonym 20215 Stutzerimonas chloritidismutans 20215 Pseudomonas perfectomarinus 20215 Bacterium stutzeri 20215 Pseudomonas kunmingensis 20215 Pseudomonas chloritidismutans 20215 Stutzerimonas kunmingensis 20215 Stutzerimonas stutzeri 20215 Stutzerimonas perfectomarina 20215 Pseudomonas perfectomarina
@ref: 23704
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas stutzeri
full scientific name: Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946
type strain: no
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
23704 | MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457) | yes | https://mediadive.dsmz.de/medium/457 | Name: MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457; with strain-specific modifications) Composition: Na2HPO4 2.44 g/l KH2PO4 1.52 g/l KNO3 1.0 g/l (NH4)2SO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l CaCl2 x 2 H2O 0.05 g/l EDTA 0.005 g/l FeSO4 x 7 H2O 0.002 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l Na2MoO4 x 2 H2O 3e-05 g/l MnCl2 x 4 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Distilled water |
23704 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
culture temp
- @ref: 23704
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
compound production
@ref | compound |
---|---|
23704 | hydratase |
23704 | aldehyde reductase |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | + | assimilation |
68369 | 24265 | gluconate | - | assimilation |
68369 | 17306 | maltose | + | assimilation |
68369 | 59640 | N-acetylglucosamine | - | assimilation |
68369 | 16899 | D-mannitol | - | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | + | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | - | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68369 | cytochrome oxidase | + | 1.9.3.1 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | - | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
23704 | + | - | - | - | - | - | - | - | + | - | - | - | - | + | - | + | - | + | + | - | + |
23704 | + | - | - | - | - | - | - | - | + | - | - | - | - | + | - | + | - | + | + | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 23704
- sample type: Soil sample from meadow
- geographic location: Konstanz, Hockgraben
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Agriculture | #Meadow |
#Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_5087.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_64;98_148;99_5087&stattab=map
- Last taxonomy: Pseudomonas
- 16S sequence: AY727863
- Sequence Identity:
- Total samples: 1328
- soil counts: 220
- aquatic counts: 520
- animal counts: 534
- plant counts: 54
Safety information
risk assessment
- @ref: 23704
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 23704
- description: Pseudomonas stutzeri strain Chol1a 16S ribosomal RNA gene, partial sequence
- accession: AY727863
- length: 1423
- database: ena
- NCBI tax ID: 316
External links
@ref: 23704
culture collection no.: DSM 103613, Chol 1
straininfo link
- @ref: 90299
- straininfo: 407521
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Metabolism | 29054875 | A Novel Steroid-Coenzyme A Ligase from Novosphingobium sp. Strain Chol11 Is Essential for an Alternative Degradation Pathway for Bile Salts. | Yucel O, Holert J, Ludwig KC, Thierbach S, Philipp B | Appl Environ Microbiol | 10.1128/AEM.01492-17 | 2017 | Bacterial Proteins/*genetics/metabolism, Cholates/*metabolism, Coenzyme A Ligases/*genetics/metabolism, Metabolic Networks and Pathways, Sphingomonadaceae/*genetics/metabolism, Steroids/chemistry | Enzymology |
Metabolism | 30680854 | The 7alpha-hydroxysteroid dehydratase Hsh2 is essential for anaerobic degradation of the steroid skeleton of 7alpha-hydroxyl bile salts in the novel denitrifying bacterium Azoarcus sp. strain Aa7. | Yucel O, Borgert SR, Poehlein A, Niermann K, Philipp B | Environ Microbiol | 10.1111/1462-2920.14508 | 2019 | Anaerobiosis, Azoarcus/enzymology/genetics/*metabolism, Bacterial Proteins/genetics/*metabolism, Bile Acids and Salts/chemistry/*metabolism, Cholates/metabolism, Denitrification, Hydroxysteroid Dehydrogenases/genetics/*metabolism, Hydroxysteroids/metabolism, Rhodocyclaceae/enzymology/genetics/metabolism, Steroids/chemistry/metabolism | Enzymology |
Metabolism | 34469190 | Comparative Analysis of Bile-Salt Degradation in Sphingobium sp. Strain Chol11 and Pseudomonas stutzeri Strain Chol1 Reveals Functional Diversity of Proteobacterial Steroid Degradation Enzymes and Suggests a Novel Pathway for Side Chain Degradation. | Feller FM, Richtsmeier P, Wege M, Philipp B | Appl Environ Microbiol | 10.1128/AEM.01453-21 | 2021 | Acyl-CoA Dehydrogenase/*metabolism, Bacterial Proteins/metabolism, Bile Acids and Salts/*metabolism, Mixed Function Oxygenases/*metabolism, *Pseudomonas stutzeri/enzymology/genetics, *Sphingomonadaceae/enzymology/genetics, Steroids/*metabolism | Enzymology |
Metabolism | 34683472 | Investigations on the Degradation of the Bile Salt Cholate via the 9,10-Seco-Pathway Reveals the Formation of a Novel Recalcitrant Steroid Compound by a Side Reaction in Sphingobium sp. Strain Chol11. | Feller FM, Eilebrecht S, Nedielkov R, Yucel O, Alvincz J, Salinas G, Ludwig KC, Moller H, Philipp B | Microorganisms | 10.3390/microorganisms9102146 | 2021 |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
23704 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103613 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103613) | |
68369 | Automatically annotated from API 20NE | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
90299 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407521.1 |