Name: Pseudomonas stutzeri MD 41.1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 13013

Type strain:

Species: Pseudomonas stutzeri

Strain Designation: MD 41.1

Culture col. no.: CCUG 711, NRRL B-927, NCTC 10475, LMG 1228, CIP 59.54, DSM 50227, ATCC 11607, ICPB 2445, NCIB 9721, CIP 63.21, NRRL: B-927, LMG 2334, NCIMB 9721, CCEB 522

Strain history: CIP <- 1963, O. Lysenko, Prague, Czechoslovakia <- NRRL <- C.B. van Niel: strain MD 41.1

NCBI tax ID(s): 203192 (species), 1211807 (species), 316 (species)

SI-ID 2819

NCIB 9721, NCTC 10475, LMG 1228, ATCC 11607, CCUG 711, CECT 325, DSM 50227, LMG 2334, LMG 6394, NRRL B-927, NCIMB 9721, VKM B-903, CIP 59.54, CIP 63.21, CDBB 101

Special Collections

Other strains from Pseudomonas stutzeri

Section

Pseudomonas stutzeri MD 41.1 is an obligate aerobe, Gram-negative, motile human pathogen that was isolated from Unknown source.

Gram-negative
motile
rod-shaped
human pathogen
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas stutzeri**
	Full Scientific Name (LPSN)	Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946 (Approved Lists 1980)

	Synonym	Stutzerimonas chloritidismutans
	Synonym	"Pseudomonas* perfectomarinus"*
	Synonym	"Bacterium* stutzeri"*
	Synonym	Pseudomonas kunmingensis
	Synonym	Pseudomonas chloritidismutans
	Synonym	Stutzerimonas kunmingensis
	Synonym	Stutzerimonas stutzeri
	Synonym	Stutzerimonas perfectomarina
	Synonym	Pseudomonas perfectomarina

Information on morphological and physiological properties Morphology

[Ref.: #123338]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99

[Ref.: #123338]	Cell shape	rod-shaped

[Ref.: #123338]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %92.291

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12678]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #12678]

Culture medium growth

[Ref.: #12678]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12678]

Culture medium composition

expand / minimize

[Ref.: #34811]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #34811]

Culture medium growth

[Ref.: #34811]

Culture medium composition

expand / minimize

[Ref.: #123338]

Culture medium

CIP Medium 72

[Ref.: #123338]

Culture medium growth

[Ref.: #123338]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #123338]

Culture medium

CIP Medium 3

[Ref.: #123338]

Culture medium growth

[Ref.: #123338]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #12678]			growth	28 °C
[Ref.: #34811]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #123338]	Oxygen tolerance	obligate aerobe
[Ref.: #69480]	Oxygen tolerance	aerobe Confidence in %91.169

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #123338]	nitrate ChEBI	+	reduction
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #123338]	nitrite ChEBI	+	reduction
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #123338]		indole ChEBI	no
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE, API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123338]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123338]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #123338]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #44247]

Fatty acid	Percentage	ECL
C16:1 ω7c	39.9	15.819
C12:0	19.6	12
C18:1 ω7c /12t/9t	14.1	17.824
C16:0	11.9	16
C10:0 3OH	6.6	11.423
C12:0 3OH	4.2	13.455
C14:0	2.1	14
C17:0 CYCLO	0.7	16.888
unknown 11.798	0.6	11.798
C10:0	0.5	10

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #12678]	25296	+	-	-	-	-	-	-	-	+	-	-	+	-	+	+	+	-	+	+	-	+
[Ref.: #44247]	8703	+	-	-	-	-	-	-	-	+	-	-	-	-	+	+	+	-	+	+	-	+
[Ref.: #12678]	23121	+	-	-	-	-	-	-	-	+	-	-	+	-	+	+	+	-	+	+	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123338]	13035	-	+	+	+	+	+	+	-	+	-	-	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #123338]	Sample type/isolated from	Unknown source
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12678]	Pathogenicity (human)	yes, in single cases
[Ref.: #12678]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123338]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Pseudomonas stutzeri 16S rRNA gene, partial sequence	U58659	1334	GenBank ENA	316 tax ID	*
[Ref.: #20218]	Pseudomonas stutzeri strain DSM 50227 16S rRNA gene	U26415	1456	GenBank ENA	316 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Stutzerimonas stutzeri NCTC10475	GCA_900638035	complete	GenBank ENA	316 tax ID	*
[Ref.: #66792]	Stutzerimonas stutzeri DSM 50227	GCA_002843895	scaffold	GenBank ENA	316 tax ID	*
[Ref.: #66792]	Pseudomonas stutzeri strain DSM 50227	316.357	wgs	PATRIC	316 tax ID	*
[Ref.: #66792]	Pseudomonas stutzeri strain FDAARGOS_1065	316.579	complete	PATRIC	316 tax ID	*
[Ref.: #66792]	Pseudomonas stutzeri strain NCTC10475	316.450	complete	PATRIC	316 tax ID	*
[Ref.: #66792]	Stutzerimonas kunmingensis DSM 50227	GCA_024397485	contig	GenBank ENA	1211807 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudomonas stutzeri strain NCTC10475 PATRIC: 316.450
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudomonas stutzeri NCTC10475 NCBI: GCA_900638035.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.866	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	91.169	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	85.817	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.857	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	92.291	no

Availability in culture collections External links

[Ref.: #12678]

Culture collection no.

CCUG 711, NRRL B-927, NCTC 10475, LMG 1228, CIP 59.54, DSM 50227, ATCC 11607, ICPB 2445, NCIB 9721, CIP 63.21, NRRL: B-927, LMG 2334, NCIMB 9721, CCEB 522

[Ref.: #82223]

SI-ID 2819

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Ca2+ and the bacterial peroxidases: the cytochrome c peroxidase from Pseudomonas stutzeri.	Timoteo CG, Tavares P, Goodhew CF, Duarte LC, Jumel K, Girio FM, Harding S, Pettigrew GW, Moura I	J Biol Inorg Chem	10.1007/s00775-002-0382-y	2002	*
Enzymology	Separation of bacterial cells by isoelectric focusing, a new method for analysis of complex microbial communities.	Jaspers E, Overmann J	Appl Environ Microbiol	10.1128/aem.63.8.3176-3181.1997	1997	*
Enzymology	Immunochemical patterns of distribution of nitrous oxide reductase and nitrite reductase (cytochrome cd1) among denitrifying pseudomonads.	Korner H, Frunzke K, Dohler K, Zumft WG	Arch Microbiol	10.1007/BF00429641	1987	*
Metabolism	NMR and electron-paramagnetic-resonance studies of a dihaem cytochrome from Pseudomonas stutzeri (ATCC 11607) (cytochrome c peroxidase).	Villalain J, Moura I, Liu MC, Payne WJ, LeGall J, Xavier AV, Moura JJ	Eur J Biochem	10.1111/j.1432-1033.1984.tb08192.x	1984	*

References

#12678

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 50227

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#34811 ; Curators of the CIP;
#44247 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 711

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82223

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID2819.1 )

#123338 Collection of Institut Pasteur ; Curators of the CIP; CIP 63.21
* These data were automatically processed and therefore are not curated

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Pseudomonas stutzeri strain NCTC10475

Pseudomonas stutzeri NCTC10475

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