Strain identifier

BacDive ID: 13015

Type strain: No

Species: Pseudomonas stutzeri

Strain history: <- CCUG <- L. A. Romanenko, KMM Vladivostok

NCBI tax ID(s): 203192 (species), 316 (species)

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General

@ref: 16517

BacDive-ID: 13015

DSM-Number: 22786

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, human pathogen

description: Pseudomonas stutzeri KMM 235 is an aerobe, mesophilic human pathogen that was isolated from ascidian Didemnum sp..

NCBI tax id

NCBI tax idMatching level
203192species
316species

strain history

  • @ref: 16517
  • history: <- CCUG <- L. A. Romanenko, KMM Vladivostok

doi: 10.13145/bacdive13015.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas stutzeri
  • full scientific name: Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Stutzerimonas chloritidismutans
    20215Pseudomonas perfectomarinus
    20215Bacterium stutzeri
    20215Pseudomonas kunmingensis
    20215Pseudomonas chloritidismutans
    20215Stutzerimonas kunmingensis
    20215Stutzerimonas stutzeri
    20215Stutzerimonas perfectomarina
    20215Pseudomonas perfectomarina

@ref: 16517

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas stutzeri

full scientific name: Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946

type strain: no

Culture and growth conditions

culture medium

  • @ref: 16517
  • name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/535
  • composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16517positivegrowth28mesophilic
57256positivegrowth30-37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 57256
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate-assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    57256C10:00.310
    57256C12:09.712
    57256C14:0114
    57256C16:017.516
    57256C18:00.318
    57256C10:0 3OH4.511.423
    57256C12:0 3OH2.913.455
    57256C16:1 ω7c33.215.819
    57256C17:0 iso0.216.629
    57256C18:1 ω7c /12t/9t29.817.824
    57256C18:2 ω6,9c/C18:0 ANTE0.417.724
    57256unknown 11.7980.211.798
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
16517+-------+--+-+-++++-+

Isolation, sampling and environmental information

isolation

@refsample typehost speciescountryorigin.countrycontinentsampling dategeographic location
16517ascidian Didemnum sp.DidemnumMaldivesMDVAsia
57256Ascidian (Didemnum sp.)1988-04-01Maldives coastal waters

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Host#Invertebrates (Other)#Tunicata

taxonmaps

  • @ref: 69479
  • File name: preview.99_2981.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_64;98_148;99_2981&stattab=map
  • Last taxonomy: Pseudomonas
  • 16S sequence: AB176955
  • Sequence Identity:
  • Total samples: 876
  • soil counts: 126
  • aquatic counts: 380
  • animal counts: 321
  • plant counts: 49

Safety information

risk assessment

  • @ref: 16517
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16517
  • description: Pseudomonas stutzeri gene for 16S rRNA, partial sequence
  • accession: AB176955
  • length: 1443
  • database: ena
  • NCBI tax ID: 316

Genome sequences

  • @ref: 66792
  • description: Stutzerimonas stutzeri CCUG 46542
  • accession: GCA_024448345
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 316

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedyes88.394no
gram-positiveno98.9no
anaerobicno98.09no
aerobicyes92.973no
halophileno80.716no
spore-formingno95.266no
motileyes90.135no
glucose-fermentno91.778no
thermophileno99.748yes
glucose-utilyes91.074yes

External links

@ref: 16517

culture collection no.: KMM 235, DSM 22786, CCUG 46542

straininfo link

  • @ref: 82225
  • straininfo: 131489

literature

  • topic: Phylogeny
  • Pubmed-ID: 15942867
  • title: Pseudomonas xanthomarina sp. nov., a novel bacterium isolated from marine ascidian.
  • authors: Romanenko LA, Uchino M, Falsen E, Lysenko AM, Zhukova NV, Mikhailov VV
  • journal: J Gen Appl Microbiol
  • DOI: 10.2323/jgam.51.65
  • year: 2005
  • mesh: Animals, Base Sequence, DNA, Bacterial/chemistry/genetics, Fatty Acids/analysis, Nucleic Acid Hybridization, Phylogeny, Pseudomonas/classification/genetics/*isolation & purification/metabolism, RNA, Ribosomal, 16S/chemistry/genetics, Sequence Alignment, Sequence Analysis, DNA, Urochordata/*microbiology
  • topic2: Transcriptome

Reference

@idauthorscataloguedoi/urltitle
16517Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22786)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22786
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
57256Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 46542)https://www.ccug.se/strain?id=46542
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
82225Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID131489.1StrainInfo: A central database for resolving microbial strain identifiers