Name: Agrobacterium radiobacter JCM 20922
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 163010

Type strain:

Species: Agrobacterium radiobacter

Culture col. no.: JCM 20922, IAM 13573, NCPPB 2659

Strain history: IAM 13573 <-- NCPPB 2659 <-- F. W. Catton C789.

NCBI tax ID(s): 362 (species)

SI-ID 7021

LMG 12232, NCPPB 2659, IAM 13573, JCM 20922

Special Collections

Other strains from Agrobacterium radiobacter

Section

Agrobacterium radiobacter JCM 20922 is a Gram-negative bacterium that was isolated from Hairy root.

Gram-negative
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Agrobacterium*
	Species	**Agrobacterium radiobacter**
	Full Scientific Name (LPSN)	Agrobacterium radiobacter (Beijerinck and van Delden 1902) Conn 1942 (Approved Lists 1980)

	Synonym	"Bacillus* radiobacter"*
	Synonym	Rhizobium radiobacter
	Synonym	Beijerinckia fluminensis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %95.333

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %93.637
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Hairy root
[Ref.: #67770]	Country	United Kingdom
[Ref.: #67770]	Country ISO 3 Code	GBR
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhizobium rhizogenes NCPPB2659	GCA_001649535	chromosome	GenBank ENA	359 tax ID	*
[Ref.: #66792]	Agrobacterium rhizogenes strain K599	359.65	complete	PATRIC	359 tax ID	*
[Ref.: #66792]	Agrobacterium rhizogenes strain K599 strain K599 (NCPPB2659)	359.72	plasmid	PATRIC	359 tax ID	*
[Ref.: #66792]	Agrobacterium rhizogenes strain NCPPB2659	359.51	wgs	PATRIC	359 tax ID	*
[Ref.: #66792]	Agrobacterium rhizogenes NCPPB 2659	2848838226	complete	JGI IMG/M	359 tax ID	*
[Ref.: #66792]	Agrobacterium rhizogenes K599 (NCPPB2659)	2826349812	complete	JGI IMG/M	359 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Agrobacterium rhizogenes strain K599 PATRIC: 359.65
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Agrobacterium rhizogenes strain K599 PATRIC: 359.65
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	95.333	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	88.059	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	93.637	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	77.537	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	99.496	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	64.119	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 20922, IAM 13573, NCPPB 2659

[Ref.: #113779]

SI-ID 7021

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#113779

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID7021.1 )

* These data were automatically processed and therefore are not curated

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Agrobacterium rhizogenes strain K599

Agrobacterium rhizogenes strain K599

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