Name: Lactobacillus crispatus 58-098-135
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 137068

Type strain:

Species: Lactobacillus crispatus

Strain Designation: 58-098-135

Culture col. no.: CIP 104459

Strain history: CIP <- 1995, F. Gasser, Inst. Pasteur, Paris, France: strain 63Fa, Lactobacillus acidophilus <- F. Guillermet, Inst. Pasteur, Lyon, France: strain 58-098-135 <- Croix-Rousse Hosp., Lyon, France

NCBI tax ID(s): 47770 (species)

SI-ID 68990

CIP 104459

Special Collections

Other strains from Lactobacillus crispatus

Section

Lactobacillus crispatus 58-098-135 is a facultative anaerobe, Gram-positive bacterium of the family Lactobacillaceae.

Gram-positive
facultative anaerobe
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Lactobacillus*
	Species	**Lactobacillus crispatus**
	Full Scientific Name (LPSN)	Lactobacillus crispatus (Brygoo and Aladame 1953) Moore and Holdeman 1970 (Approved Lists 1980)

Synonym

"Eubacterium crispatum"

Information on morphological and physiological properties Morphology

[Ref.: #36916]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %94.193

[Ref.: #36916]	Cell shape	rod-shaped

[Ref.: #36916]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #36916]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #36916]

Culture medium growth

[Ref.: #36916]

Culture medium composition

expand / minimize

[Ref.: #36916]

Culture medium

CIP Medium 40

[Ref.: #36916]

Culture medium growth

[Ref.: #36916]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #36916]		growth	37 °C
[Ref.: #36916]	no	growth	15 °C
[Ref.: #36916]	no	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #36916]

Oxygen tolerance

facultative anaerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %91.438

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #36916]	nitrate ChEBI	-	reduction
[Ref.: #36916]	nitrate ChEBI	+	respiration
[Ref.: #36916]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #36916]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #36916]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #36916]	catalase	-	1.11.1.6
[Ref.: #36916]	lysine decarboxylase	-	4.1.1.18
[Ref.: #36916]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #36916]	oxidase	-

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #36916]	9625	not determinedn.d.	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	+	+/-	+	+	+	+	+	+	-	+	+	-	-	-	+	+	-	+/-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #36916]	Sample type/isolated from	Human, Vaginal swab
[Ref.: #36916]	Geographic location (country and/or sea, region)	Lyon
[Ref.: #36916]	Country	France
[Ref.: #36916]	Country ISO 3 Code	FRA
[Ref.: #36916]	Continent	Europe
[Ref.: #36916]	Isolation date	1955

[Ref.: #36916]	Geographic location (country and/or sea, region)	Lyon
[Ref.: #36916]	Country	France
[Ref.: #36916]	Country ISO 3 Code	FRA
[Ref.: #36916]	Continent	Europe
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #36916]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Lactobacillus crispatus CIP 104459	GCA_008079315	contig	GenBank ENA	47770 tax ID	*
[Ref.: #66792]	Lactobacillus crispatus strain CIP 104459	47770.572	wgs	PATRIC	47770 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactobacillus crispatus strain CIP 104459 PATRIC: 47770.572
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	94.193	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	69.032	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	91.438	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	97.643	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.5	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	93.5	no

Availability in culture collections External links

[Ref.: #36916]

Culture collection no.

CIP 104459

[Ref.: #94043]

SI-ID 68990

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Variability of the response of human vaginal Lactobacillus crispatus to 17beta-estradiol.	Clabaut M, Boukerb AM, Mlouka AB, Suet A, Tahrioui A, Verdon J, Barreau M, Maillot O, Le Tirant A, Karsybayeva M, Kremser C, Redziniak G, Duclairoir-Poc C, Pichon C, Hardouin J, Cosette P, Chevalier S, Feuilloley MGJ	Sci Rep	10.1038/s41598-021-91017-5	2021	*
Genetics	Draft Genome Sequence of Lactobacillus crispatus CIP 104459, Isolated from a Vaginal Swab.	Clabaut M, Boukerb AM, Racine PJ, Pichon C, Kremser C, Picot JP, Karsybayeva M, Redziniak G, Chevalier S, Feuilloley MGJ	Microbiol Resour Announc	10.1128/MRA.01373-19	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#36916 Collection of Institut Pasteur ; Curators of the CIP; CIP 104459

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68371

Automatically annotated from API 50CH acid .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#94043

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID68990.1 )

* These data were automatically processed and therefore are not curated

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Lactobacillus crispatus strain CIP 104459

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