Lactobacillus crispatus CIP 105002 is a facultative anaerobe, mesophilic, Gram-positive prokaryote that was isolated from Chicken feces.
Gram-positive rod-shaped facultative anaerobe mesophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Bacillati |
| Phylum Bacillota |
| Class Bacilli |
| Order Lactobacillales |
| Family Lactobacillaceae |
| Genus Lactobacillus |
| Species Lactobacillus crispatus |
| Full scientific name Lactobacillus crispatus (Brygoo and Aladame 1953) Moore and Holdeman 1970 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125438 | 91.425 |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 41426 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | - | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | + | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 41426 | catalase | - | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 68382 | leucine arylamidase | - | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 41426 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 41426 | ornithine decarboxylase | - | 4.1.1.17 | |
| 41426 | oxidase | - | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 68382 | valine arylamidase | - | from API zym |
| @ref | Biosafety level | Biosafety level comment | |
|---|---|---|---|
| 41426 | 1 | Risk group (French classification) |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM156709v1 assembly for Lactobacillus crispatus JCM 5810 | contig | 47770 | 76.66 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 124043 | Lactobacillus crispatus gene for 16S rRNA, partial sequence, strain: JCM 5810. | AB289071 | 675 | 47770 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 72.10 | no |
| 125439 | motility | BacteriaNetⓘ | no | 50.80 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 87.30 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | anaerobe | 99.00 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 92.05 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 70.14 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 91.43 | no |
| 125438 | aerobic | aerobicⓘ | no | 96.69 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 96.50 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 92.50 | no |
| Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|
| Lactobacillus crispatus Strain KT-11 S-Layer Protein Inhibits Rotavirus Infection. | Kawahara T, Shimizu I, Tanaka Y, Tobita K, Tomokiyo M, Watanabe I. | Front Microbiol | 10.3389/fmicb.2022.783879 | 2022 | |
| Complex species and strain ecology of the vaginal microbiome from pregnancy to postpartum and association with preterm birth. | Pace RM, Chu DM, Prince AL, Ma J, Seferovic MD, Aagaard KM. | Med | 10.1016/j.medj.2021.06.001 | 2021 | |
| Surface layer proteins in species of the family Lactobacillaceae. | Palomino MM, Allievi MC, Gordillo TB, Bockor SS, Fina Martin J, Ruzal SM. | Microb Biotechnol | 10.1111/1751-7915.14230 | 2023 | |
| Lactobacillus Cell Surface Proteins Involved in Interaction with Mucus and Extracellular Matrix Components. | Muscariello L, De Siena B, Marasco R. | Curr Microbiol | 10.1007/s00284-020-02243-5 | 2020 | |
| Antimicrobial Activity of Probiotic Bacteria Isolated from Plants: A Review. | Sharma A, Lee HJ. | Foods | 10.3390/foods14030495 | 2025 | |
| Probiotics and Postbiotics as Substitutes of Antibiotics in Farm Animals: A Review. | Zamojska D, Nowak A, Nowak I, Macierzynska-Piotrowska E. | Animals (Basel) | 10.3390/ani11123431 | 2021 | |
| [Research Progress in the Relationship Between Lactobacillus and Dental Caries]. | Zhang J, Xu X. | Sichuan Da Xue Xue Bao Yi Xue Ban | 10.12182/20220960103 | 2022 | |
| Intestinal colonization with Campylobacter jejuni affects broiler gut microbiota composition but is not inhibited by daily intake of Lactiplantibacillus plantarum. | Valeckova E, Sun L, Wang H, Dube F, Ivarsson E, Kasmaei KM, Ellstrom P, Wall H. | Front Microbiol | 10.3389/fmicb.2023.1205797 | 2023 | |
| Optimization of hydrolysis conditions for the mannooligosaccharides copra meal hydrolysate production. | Rungruangsaphakun J, Keawsompong S. | 3 Biotech | 10.1007/s13205-018-1178-2 | 2018 | |
| Lactobacillus surface layer proteins: structure, function and applications. | Hynonen U, Palva A. | Appl Microbiol Biotechnol | 10.1007/s00253-013-4962-2 | 2013 | |
| Molecular insights into probiotic mechanisms of action employed against intestinal pathogenic bacteria. | van Zyl WF, Deane SM, Dicks LMT. | Gut Microbes | 10.1080/19490976.2020.1831339 | 2020 | |
| Identification and adhesion profile of Lactobacillus spp. strains isolated from poultry. | Rocha TS, Baptista AA, Donato TC, Milbradt EL, Okamoto AS, Andreatti Filho RL. | Braz J Microbiol | 10.1590/s1517-83822014000300040 | 2014 | |
| In vitro assessment of Pediococcus acidilactici Kp10 for its potential use in the food industry. | Abbasiliasi S, Tan JS, Bashokouh F, Ibrahim TAT, Mustafa S, Vakhshiteh F, Sivasamboo S, Ariff AB. | BMC Microbiol | 10.1186/s12866-017-1000-z | 2017 | |
| Heterologous protein display on the cell surface of lactic acid bacteria mediated by the s-layer protein. | Hu S, Kong J, Sun Z, Han L, Kong W, Yang P. | Microb Cell Fact | 10.1186/1475-2859-10-86 | 2011 | |
| Production of organic acids by probiotic lactobacilli can be used to reduce pathogen load in poultry. | Neal-McKinney JM, Lu X, Duong T, Larson CL, Call DR, Shah DH, Konkel ME. | PLoS One | 10.1371/journal.pone.0043928 | 2012 | |
| Dynamic cell surface hydrophobicity of Lactobacillus strains with and without surface layer proteins. | Vadillo-Rodriguez V, Busscher HJ, Norde W, de Vries J, van der Mei HC. | J Bacteriol | 10.1128/jb.186.19.6647-6650.2004 | 2004 | |
| Development and assessment of a real-time pcr assay for rapid and sensitive detection of a novel thermotolerant bacterium, Lactobacillus thermotolerans, in chicken feces. | Selim AS, Boonkumklao P, Sone T, Assavanig A, Wada M, Yokota A. | Appl Environ Microbiol | 10.1128/aem.71.8.4214-4219.2005 | 2005 | |
| Identification and characterization of domains responsible for self-assembly and cell wall binding of the surface layer protein of Lactobacillus brevis ATCC 8287. | Avall-Jaaskelainen S, Hynonen U, Ilk N, Pum D, Sleytr UB, Palva A. | BMC Microbiol | 10.1186/1471-2180-8-165 | 2008 | |
| Lipoteichoic acid mediates binding of a Lactobacillus S-layer protein. | Bonisch E, Oh YJ, Anzengruber J, Hager FF, Lopez-Guzman A, Zayni S, Hinterdorfer P, Kosma P, Messner P, Duda KA, Schaffer C. | Glycobiology | 10.1093/glycob/cwx102 | 2018 | |
| GtfA and GtfB are both required for protein O-glycosylation in Lactobacillus plantarum. | Lee IC, van Swam II, Tomita S, Morsomme P, Rolain T, Hols P, Kleerebezem M, Bron PA. | J Bacteriol | 10.1128/jb.01401-13 | 2014 | |
| Identification and characterization of novel surface proteins in Lactobacillus johnsonii and Lactobacillus gasseri. | Ventura M, Jankovic I, Walker DC, Pridmore RD, Zink R. | Appl Environ Microbiol | 10.1128/aem.68.12.6172-6181.2002 | 2002 | |
| Detection, characterization, and in vitro and in vivo expression of genes encoding S-proteins in Lactobacillus gallinarum strains isolated from chicken crops. | Hagen KE, Guan LL, Tannock GW, Korver DR, Allison GE. | Appl Environ Microbiol | 10.1128/aem.71.11.6633-6643.2005 | 2005 | |
| Characterization of Lactobacillus coryniformis DSM 20001T surface protein Cpf mediating coaggregation with and aggregation among pathogens. | Schachtsiek M, Hammes WP, Hertel C. | Appl Environ Microbiol | 10.1128/aem.70.12.7078-7085.2004 | 2004 | |
| Slp-coated liposomes for drug delivery and biomedical applications: potential and challenges. | Luo G, Yang Q, Yao B, Tian Y, Hou R, Shao A, Li M, Feng Z, Wang W. | Int J Nanomedicine | 10.2147/ijn.s189935 | 2019 | |
| S-Layer proteins. | Sara M, Sleytr UB. | J Bacteriol | 10.1128/jb.182.4.859-868.2000 | 2000 | |
| Phenylacetic acid, an anti-vaginitis metabolite produced by the vaginal symbiotic bacterium Chryseobacterium gleum. | Kwon KM, Kim EH, Sim KH, Lee YJ, Kang EJ, Han KH, Jin JS, Kim DK, Ahn JH, Hwang IH. | Sci Rep | 10.1038/s41598-024-62947-7 | 2024 | |
| S-layer protein 2 of Lactobacillus crispatus 2029, its structural and immunomodulatory characteristics and roles in protective potential of the whole bacteria against foodborne pathogens. | Abramov VM, Kosarev IV, Priputnevich TV, Machulin AV, Khlebnikov VS, Pchelintsev SY, Vasilenko RN, Sakulin VK, Suzina NE, Chikileva IO, Derysheva EI, Melnikov VG, Nikonov IN, Samoilenko VA, Svetoch EE, Sukhikh GT, Uversky VN, Karlyshev AV | Int J Biol Macromol | 10.1016/j.ijbiomac.2020.02.065 | 2020 | |
| Draft Genome Sequence of Lactobacillus crispatus JCM5810, Which Can Reduce Campylobacter jejuni Colonization in Chicken Intestine. | Wooten J, Liu X, Miller MJ | Genome Announc | 10.1128/genomeA.00255-16 | 2016 | |
| Domains in the S-layer protein CbsA of Lactobacillus crispatus involved in adherence to collagens, laminin and lipoteichoic acids and in self-assembly. | Antikainen J, Anton L, Sillanpaa J, Korhonen TK | Mol Microbiol | 10.1046/j.1365-2958.2002.03180.x | 2002 | |
| Inhibition of the adherence of Escherichia coli strains to basement membrane by Lactobacillus crispatus expressing an S-layer. | Horie M, Ishiyama A, Fujihira-Ueki Y, Sillanpaa J, Korhonen TK, Toba T | J Appl Microbiol | 10.1046/j.1365-2672.2002.01539.x | 2002 | |
| Expression of cbsA encoding the collagen-binding S-protein of Lactobacillus crispatus JCM5810 in Lactobacillus casei ATCC 393(T). | Martinez B, Sillanpaa J, Smit E, Korhonen TK, Pouwels PH | J Bacteriol | 10.1128/JB.182.23.6857-6861.2000 | 2000 | |
| Characterization of the collagen-binding S-layer protein CbsA of Lactobacillus crispatus. | Sillanpaa J, Martinez B, Antikainen J, Toba T, Kalkkinen N, Tankka S, Lounatmaa K, Keranen J, Hook M, Westerlund-Wikstrom B, Pouwels PH, Korhonen TK | J Bacteriol | 10.1128/JB.182.22.6440-6450.2000 | 2000 | |
| A Collagen-Binding S-Layer Protein in Lactobacillus crispatus. | Toba T, Virkola R, Westerlund B, Bjorkman Y, Sillanpaa J, Vartio T, Kalkkinen N, Korhonen TK | Appl Environ Microbiol | 10.1128/aem.61.7.2467-2471.1995 | 1995 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #41426 | Collection of Institut Pasteur ; Curators of the CIP; CIP 105002 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68382 | Automatically annotated from API zym . |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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