Lactobacillus crispatus (DSM 108970, Cla-CZ-47)

Name: Lactobacillus crispatus (DSM 108970, Cla-CZ-47)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 160075

Type strain

Strain Designation Cla-CZ-47

Culture col. no. DSM 108970 Cla-CZ-47

NCBI tax ID(s) 47770

Special Collections DSMZ Chicken DZIF

History <- T. Clavel; RWTH Aachen, Germany; Cla-CZ-47

Links

Lactobacillus crispatus Cla-CZ-47 is a mesophilic prokaryote that was isolated from chicken colon content, adult.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 402815

DSM 108970

@ref 20215

Last LPSN update 2025-12-16 10:08:24

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Lactobacillus

Species Lactobacillus crispatus

Full scientific name Lactobacillus crispatus (Brygoo and Aladame 1953) Moore and Holdeman 1970 (Approved Lists 1980)

Synonyms (1)

"Eubacterium crispatum"

BacDive ID	Other strains from **Lactobacillus crispatus** (34)	Type strain
6442	L. crispatus DSM 20584, ATCC 33820, CCUG 30722, JCM 1185, ... (type strain)
6441	L. crispatus A 12, DSM 20356, JCM 2123, CIP 105000, LMG ...
135308	L. crispatus CIP 103602, CG 97, VPI 1784
135309	L. crispatus CIP 103603, NCTC 4505, NCIMB 4505, CCUG 42897, ...
135310	L. crispatus VJ-A, CIP 103604, VPI 6317
135311	L. crispatus CIP 103605, VPI 7635
135475	L. crispatus F3, CIP 105003, JCM 8780, LMG 18201
136226	L. crispatus A11, CIP 103608
137068	L. crispatus 58-098-135, CIP 104459
138142	L. crispatus F5, CIP 105004, JCM 8781, CCUG 31411, LMG ...
138805	L. crispatus A5, CIP 103606, VPI 11697
139286	L. crispatus Sp34, CIP 105001, JCM 5808, KCTC 3176, LMG ...
139287	L. crispatus CIP 105002, JCM 5810, KCTC 3178, LMG 18191
144917	L. crispatus CCUG 27076 A
145367	L. crispatus CCUG 28280
146793	L. crispatus CCUG 32128
148293	L. crispatus CCUG 35170
149929	L. crispatus CCUG 38700
150970	L. crispatus CCUG 42898, NCIMB 4504, NCTC 4504, LMG 12005
151041	L. crispatus CCUG 43131
151380	L. crispatus CCUG 44015
151479	L. crispatus CCUG 44128
152257	L. crispatus CCUG 46228
152773	L. crispatus CCUG 47593
155480	L. crispatus CCUG 57836
160903	L. crispatus JCM 1030, KCTC 3147, LMG 12003, NCFB 2172, ...
162742	L. crispatus JCM 2009, ATCC 33197, LMG 12004, VPI 7635
165301	L. crispatus JCM 5806, KCTC 3174, LMG 18187
165564	L. crispatus JCM 7696
165565	L. crispatus JCM 7697
165568	L. crispatus JCM 7702
165950	L. crispatus JCM 8778, LMG 18199
165951	L. crispatus JCM 8779, LMG 18200
172658	L. crispatus 2082, CRBIP24.77

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125438		93
125438		92.409	positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66979	BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)		Medium recipe at MediaDive	Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water
66979	WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)		Medium recipe at MediaDive	Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
66979	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.6

Spore formation

@ref	Spore formation	Confidence
125438		91.345

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68380	16024 ChEBI	D-mannose	+	fermentation	from API rID32A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68380	16634 ChEBI	raffinose	+	fermentation	from API rID32A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	+	3.4.11.2	from API rID32A
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68380	alpha-galactosidase	+	3.2.1.22	from API rID32A
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucosidase	+	3.2.1.21	from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	histidine arylamidase	+		from API rID32A
68380	L-arginine arylamidase	+		from API rID32A
68380	leucine arylamidase	+	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	+		from API rID32A
68380	serine arylamidase	+		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	+		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
66979	-	-	+	+	-	-	+	-	-	-	+	+	-	-	-	-	-	+	+	-	+	+	+	+	+	+	+	+/-	+
66979	-	-	+	+	-	+	+	-	-	-	+	+	-	-	-	-	-	+	-	-	+	+	-	+	+	+/-	+	-	+

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
66979	chicken colon content, adult	Geretsried (Bavaria)	Germany	DEU	Europe	47.8589	11.5894 47.8589/11.5894

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
66979	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1498290v1 assembly for Lactobacillus crispatus DSM 108970	contig	GCA_014982905	47770.761	47770	67.38

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66979	Lactobacillus crispatus strain ClaCZ47 16S ribosomal RNA gene, partial sequence	MN055937.1	1502		47770

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lactobacillus crispatus DSM 108970
NCBI: GCA_014982905

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	74.40	no
125439	motility	BacteriaNetⓘ	yes	66.50	no
125439	gram_stain	BacteriaNetⓘ	positive	70.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus crispatus strain DSM 108970
PATRIC: 47770.761

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.41	no
125438	anaerobic	anaerobicⓘ	no	65.98	no
125438	spore-forming	spore-formingⓘ	no	91.35	no
125438	aerobic	aerobicⓘ	no	97.33	no
125438	thermophilic	thermophileⓘ	no	96.50	no
125438	flagellated	motile2+ⓘ	no	93.00	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66979	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108970
#68380	Automatically annotated from API rID32A .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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