Enterococcus gallinarum (DSM 100110, JJM0609-2-2)

Name: Enterococcus gallinarum (DSM 100110, JJM0609-2-2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130946

Type strain

Strain Designation JJM0609-2-2

Culture col. no. DSM 100110 JJM0609-2-2

NCBI tax ID(s) 1353

Special Collections DSMZ Mouse DZIF

History <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; JJM0609-2-2

Links

Enterococcus gallinarum JJM0609-2-2 is a microaerophile human pathogen that was isolated from wild mouse.

microaerophile human pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 397880

DSM 100110

@ref 20215

Last LPSN update 2026-02-09 11:31:21

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Enterococcaceae

Genus Enterococcus

Species Enterococcus gallinarum

Full scientific name Enterococcus gallinarum (Bridge and Sneath 1982) Collins et al. 1984

Synonyms (1)

Streptococcus gallinarum

BacDive ID	Other strains from **Enterococcus gallinarum** (52)	Type strain
5314	E. gallinarum F87/276, PB21, DSM 24841, ATCC 49573, JCM ... (type strain)
130944	E. gallinarum JM-20, DSM 28564
130945	E. gallinarum 30-31, A-C2-Ob, DSM 28565
5310	E. gallinarum F87/268, PB21, DSM 20628, ATCC 35038, NCTC ...
5311	E. gallinarum F87/277, PB24 (oder PB22), PB24 (oder PB22?), ...
5312	E. gallinarum F87/279, PB24, DSM 20718, NCDO 2315
5313	E. gallinarum DSM 25780, NCCP 11518
136387	E. gallinarum D 417, CIP 105160
136575	E. gallinarum UW 701/95, BA 4174, CIP 106999
136635	E. gallinarum 2628-95, CIP 107208
137163	E. gallinarum PB18, LRA 086 10 84, CIP 103692, ATCC 49608, ...
139129	E. gallinarum BM4174, CIP 105985
142326	E. gallinarum CCUG 11665, LMG 8145
145500	E. gallinarum CCUG 28691
145503	E. gallinarum CCUG 28694
145504	E. gallinarum CCUG 28695
145505	E. gallinarum CCUG 28696, LMG 16201
145865	E. gallinarum CCUG 29831, LMG 16202
147081	E. gallinarum CCUG 32818, LMG 14739
147927	E. gallinarum CCUG 34517, LMG 16204
148173	E. gallinarum CCUG 34969
148419	E. gallinarum CCUG 35405
149137	E. gallinarum CCUG 36919 A
149232	E. gallinarum CCUG 37309
149980	E. gallinarum CCUG 38788
151308	E. gallinarum CCUG 43708
151591	E. gallinarum CCUG 44397
151744	E. gallinarum CCUG 44771
152029	E. gallinarum CCUG 45595
152099	E. gallinarum CCUG 45754
152181	E. gallinarum CCUG 45987
152401	E. gallinarum CCUG 46676
152468	E. gallinarum CCUG 46869
152575	E. gallinarum CCUG 47108
152783	E. gallinarum CCUG 47607
152795	E. gallinarum CCUG 47634
152811	E. gallinarum CCUG 47668
152996	E. gallinarum CCUG 48209
153335	E. gallinarum CCUG 49260
153459	E. gallinarum CCUG 49667
153532	E. gallinarum CCUG 50087
153931	E. gallinarum CCUG 51680
154033	E. gallinarum CCUG 52059
154576	E. gallinarum CCUG 54456
155363	E. gallinarum CCUG 57467
155735	E. gallinarum CCUG 59166
155748	E. gallinarum CCUG 59199
155749	E. gallinarum CCUG 59200
158937	E. gallinarum BL-249-WT-6, DSM 104116
160037	E. gallinarum Cla-CZ-15, DSM 109011
169222	E. gallinarum 0090-6-DD-A, S500, DSM 106191
169223	E. gallinarum Cla-AP-1, DSM 111134

Morphology

Colony morphology

22238

Incubation period1-2 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22238	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
22238	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
22238	positive	growth	37

Physiology and metabolism

Oxygen tolerance

22238

Oxygen tolerancemicroaerophile

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68381	40585 ChEBI	alpha-cyclodextrin	+	builds acid from	from API rID32STR
68381	29016 ChEBI	arginine	+	hydrolysis	from API rID32STR
68380	29016 ChEBI	arginine	+	hydrolysis	from API rID32A
68381	18333 ChEBI	D-arabitol	-	builds acid from	from API rID32STR
68381	16899 ChEBI	D-mannitol	+	builds acid from	from API rID32STR
68380	16024 ChEBI	D-mannose	+	fermentation	from API rID32A
68381	16988 ChEBI	D-ribose	+	builds acid from	from API rID32STR
68381	16443 ChEBI	D-tagatose	+	builds acid from	from API rID32STR
68381	28087 ChEBI	glycogen	-	builds acid from	from API rID32STR
68381	606565 ChEBI	hippurate	+	hydrolysis	from API rID32STR
68381	30849 ChEBI	L-arabinose	+	builds acid from	from API rID32STR
68381	17716 ChEBI	lactose	+	builds acid from	from API rID32STR
68381	17306 ChEBI	maltose	+	builds acid from	from API rID32STR
68381	6731 ChEBI	melezitose	-	builds acid from	from API rID32STR
68381	28053 ChEBI	melibiose	-	builds acid from	from API rID32STR
68381	320055 ChEBI	methyl beta-D-glucopyranoside	+	builds acid from	from API rID32STR
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68381	27941 ChEBI	pullulan	-	builds acid from	from API rID32STR
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68381	30911 ChEBI	sorbitol	-	builds acid from	from API rID32STR
68381	17992 ChEBI	sucrose	+	builds acid from	from API rID32STR
68381	27082 ChEBI	trehalose	+	builds acid from	from API rID32STR
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68381	16199 ChEBI	urea	-	hydrolysis	from API rID32STR
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68381	15688 ChEBI	acetoin		from API rID32STR
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68381	15688 ChEBI	acetoin	+		from API rID32STR
68380	35581 ChEBI	indole		-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
68381	Alanyl-Phenylalanyl-Proline arylamidase	-		from API rID32STR
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
68380	alpha-glucosidase	-	3.2.1.20	from API rID32A
68381	arginine dihydrolase	+	3.5.3.6	from API rID32STR
68380	arginine dihydrolase	+	3.5.3.6	from API rID32A
68381	beta-galactosidase	+	3.2.1.23	from API rID32STR
68381	beta-glucosidase	+	3.2.1.21	from API rID32STR
68380	beta-glucosidase	+	3.2.1.21	from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68381	beta-mannosidase	+	3.2.1.25	from API rID32STR
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68381	glycyl tryptophan arylamidase	+		from API rID32STR
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	+		from API rID32A
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68381	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API rID32STR
68380	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68381	pyrrolidonyl arylamidase	+	3.4.19.3	from API rID32STR
68380	pyrrolidonyl arylamidase	+	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68381	urease	-	3.5.1.5	from API rID32STR
68380	urease	-	3.5.1.5	from API rID32A

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
22238	-	+	-	+/-	+/-	-	+	-	-	+	+	-	not determinedn.d.	not determinedn.d.	-	-	-	+	-	-	+/-	-	+	-	-	-	-	-	-

API rID32STR

@ref	ADH (Arg)	beta GLU	beta GAR	beta GUR	alpha GAL	PAL	RIB	MAN	SOR	LAC	TRE	RAF	SAC	LARA	DARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	HIP	GLYG	PUL	MAL	MEL	MLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	TAG	beta MAN	URE
22238	+	+	+	-	-	-	+	+	-	+	+	+	+	+	-	+	+	-	+	+	+	+	+	-	-	+	-	-	+	+	+	-
22238	+	+	+/-	+	-	+	+	+	-	+	+	-	+	+	-	+	+	-	+	+	+	+	+	-	-	+	-	-	+	+	+	-
22238	+	+	+/-	-	+	-	+	+	-	+	+	-	+	+	-	+	+	-	+	+	+	+	+	-	-	+	-	-	+	+	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Muridae (Mouse/Rat)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
22238	wild mouse	Freising	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence KU196084 (>99% sequence identity) for Enterococcus from Microbeatlas

Aquatic Samples	1598
Soil Samples	573
Animal Samples	15794
Plant Samples	896
Total Samples	18861

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
22238			2	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM2462262v1 assembly for Enterococcus gallinarum DSM 100110	contig	GCA_024622625	1353.273	1353	66.49

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22238	Enterococcus gallinarum strain DSM 100110 16S ribosomal RNA gene, partial sequence	KU196084	1498		1353

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Enterococcus gallinarum DSM 100110
NCBI: GCA_024622625.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	84.21	no
125438	anaerobic	anaerobicⓘ	no	87.78	no
125438	aerobic	aerobicⓘ	no	94.11	yes
125438	spore-forming	spore-formingⓘ	no	69.33	no
125438	thermophilic	thermophileⓘ	no	93.58	no
125438	flagellated	motile2+ⓘ	yes	59.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	The flagellin of candidate live biotherapeutic Enterococcus gallinarum MRx0518 is a potent immunostimulant.	Laute-Caly DL, Raftis EJ, Cowie P, Hennessy E, Holt A, Panzica DA, Sparre C, Minter B, Stroobach E, Mulder IE	Sci Rep	10.1038/s41598-018-36926-8	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22238	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100110
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68380	Automatically annotated from API rID32A .
#68381	Automatically annotated from API rID32STR .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Enterococcus gallinarum (DSM 100110, JJM0609-2-2)

Name and taxonomic classification

Morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API rID32A

API rID32STR

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_024622625

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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