Enterococcus gallinarum (DSM 28564, JM-20)

Name: Enterococcus gallinarum (DSM 28564, JM-20)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130944

Type strain

Strain Designation JM-20

Culture col. no. DSM 28564 JM-20

NCBI tax ID(s) 1353

Special Collections DSMZ Mouse DZIF

History DSMZ <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; JM-20

Links

Enterococcus gallinarum JM-20 is a microaerophile human pathogen that was isolated from caecal content; TNF^deltaARE/+ C57BL/6 mouse.

microaerophile human pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 398874

DSM 28564

@ref 20215

Last LPSN update 2026-05-29 08:37:30

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Enterococcaceae

Genus Enterococcus

Species Enterococcus gallinarum

Full scientific name Enterococcus gallinarum (Bridge and Sneath 1982) Collins et al. 1984

Synonyms (1)

Streptococcus gallinarum

BacDive ID	Other strains from **Enterococcus gallinarum** (52)	Type strain
5314	E. gallinarum F87/276, PB21, DSM 24841, ATCC 49573, JCM ... (type strain)
130945	E. gallinarum 30-31, A-C2-Ob, DSM 28565
5310	E. gallinarum F87/268, PB21, DSM 20628, ATCC 35038, NCTC ...
5311	E. gallinarum F87/277, PB24 (oder PB22), PB24 (oder PB22?), ...
5312	E. gallinarum F87/279, PB24, DSM 20718, NCDO 2315
5313	E. gallinarum DSM 25780, NCCP 11518
130946	E. gallinarum JJM0609-2-2, DSM 100110
136387	E. gallinarum D 417, CIP 105160
136575	E. gallinarum UW 701/95, BA 4174, CIP 106999
136635	E. gallinarum 2628-95, CIP 107208
137163	E. gallinarum PB18, LRA 086 10 84, CIP 103692, ATCC 49608, ...
139129	E. gallinarum BM4174, CIP 105985
142326	E. gallinarum CCUG 11665, LMG 8145
145500	E. gallinarum CCUG 28691
145503	E. gallinarum CCUG 28694
145504	E. gallinarum CCUG 28695
145505	E. gallinarum CCUG 28696, LMG 16201
145865	E. gallinarum CCUG 29831, LMG 16202
147081	E. gallinarum CCUG 32818, LMG 14739
147927	E. gallinarum CCUG 34517, LMG 16204
148173	E. gallinarum CCUG 34969
148419	E. gallinarum CCUG 35405
149137	E. gallinarum CCUG 36919 A
149232	E. gallinarum CCUG 37309
149980	E. gallinarum CCUG 38788
151308	E. gallinarum CCUG 43708
151591	E. gallinarum CCUG 44397
151744	E. gallinarum CCUG 44771
152029	E. gallinarum CCUG 45595
152099	E. gallinarum CCUG 45754
152181	E. gallinarum CCUG 45987
152401	E. gallinarum CCUG 46676
152468	E. gallinarum CCUG 46869
152575	E. gallinarum CCUG 47108
152783	E. gallinarum CCUG 47607
152795	E. gallinarum CCUG 47634
152811	E. gallinarum CCUG 47668
152996	E. gallinarum CCUG 48209
153335	E. gallinarum CCUG 49260
153459	E. gallinarum CCUG 49667
153532	E. gallinarum CCUG 50087
153931	E. gallinarum CCUG 51680
154033	E. gallinarum CCUG 52059
154576	E. gallinarum CCUG 54456
155363	E. gallinarum CCUG 57467
155735	E. gallinarum CCUG 59166
155748	E. gallinarum CCUG 59199
155749	E. gallinarum CCUG 59200
158937	E. gallinarum BL-249-WT-6, DSM 104116
160037	E. gallinarum Cla-CZ-15, DSM 109011
169222	E. gallinarum 0090-6-DD-A, S500, DSM 106191
169223	E. gallinarum Cla-AP-1, DSM 111134

Morphology

Colony morphology

22236

Incubation period1-2 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22236	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
22236	positive	growth	37

Physiology and metabolism

Oxygen tolerance

22236

Oxygen tolerancemicroaerophile

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68381	40585 ChEBI	alpha-cyclodextrin	-	builds acid from	from API rID32STR
68381	29016 ChEBI	arginine	+	hydrolysis	from API rID32STR
68381	18333 ChEBI	D-arabitol	-	builds acid from	from API rID32STR
68381	16899 ChEBI	D-mannitol	+	builds acid from	from API rID32STR
68381	16988 ChEBI	D-ribose	+	builds acid from	from API rID32STR
68381	16443 ChEBI	D-tagatose	+	builds acid from	from API rID32STR
68381	28087 ChEBI	glycogen	-	builds acid from	from API rID32STR
68381	606565 ChEBI	hippurate	+	hydrolysis	from API rID32STR
68381	30849 ChEBI	L-arabinose	+	builds acid from	from API rID32STR
68381	17716 ChEBI	lactose	+	builds acid from	from API rID32STR
68381	17306 ChEBI	maltose	+	builds acid from	from API rID32STR
68381	6731 ChEBI	melezitose	-	builds acid from	from API rID32STR
68381	320055 ChEBI	methyl beta-D-glucopyranoside	+	builds acid from	from API rID32STR
68381	27941 ChEBI	pullulan	-	builds acid from	from API rID32STR
68381	30911 ChEBI	sorbitol	-	builds acid from	from API rID32STR
68381	17992 ChEBI	sucrose	+	builds acid from	from API rID32STR
68381	27082 ChEBI	trehalose	+	builds acid from	from API rID32STR
68381	16199 ChEBI	urea	-	hydrolysis	from API rID32STR

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68381	15688 ChEBI	acetoin		from API rID32STR

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
68381	15688 ChEBI	acetoin	+	from API rID32STR

Enzymes

@ref	Value	Activity	Ec
68381	Alanyl-Phenylalanyl-Proline arylamidase	-		from API rID32STR
68381	alkaline phosphatase	-	3.1.3.1	from API rID32STR
68381	arginine dihydrolase	+	3.5.3.6	from API rID32STR
68381	beta-galactosidase	+	3.2.1.23	from API rID32STR
68381	beta-glucosidase	+	3.2.1.21	from API rID32STR
68381	beta-glucuronidase	-	3.2.1.31	from API rID32STR
68381	glycyl tryptophan arylamidase	+		from API rID32STR
68381	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API rID32STR
68381	pyrrolidonyl arylamidase	+	3.4.19.3	from API rID32STR
68381	urease	-	3.5.1.5	from API rID32STR

API rID32STR

@ref	ADH (Arg)	beta GLU	beta GAR	beta GUR	alpha GAL	PAL	RIB	MAN	SOR	LAC	TRE	RAF	SAC	LARA	DARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	HIP	GLYG	PUL	MAL	MEL	MLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	TAG	beta MAN	URE
22236	+	+	+/-	-	+	-	+	+	-	+	+	+	+	+	-	-	+	-	+	+	+	+	+	-	-	+	+/-	-	+	+	+	-
22236	+	+	-	-	-	-	+	+	-	+	+	-	+	+	-	-	+	-	+	+	+	+	+	-	-	+	-	-	+	+	-	-
22236	+	+	+	-	+	-	+	+	-	+	+	+	+	+	-	-	+	-	+	+	+	+	+	-	-	+	+	-	+	+	+	-
22236	+	+	+/-	-	+	-	+	+	-	+	+	+	+	+	-	-	+	-	+	+	+	+	+	-	-	+	+/-	-	+	+	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Muridae (Mouse/Rat)
#Host Body-Site	#Gastrointestinal tract	#Large intestine
#Host Body Product	#Gastrointestinal tract	#Caecal content

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
22236	caecal content; TNF^deltaARE/+ C57BL/6 mouse	Freising	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence KR364766 (>99% sequence identity) for Enterococcus from Microbeatlas

Aquatic Samples	1598
Soil Samples	573
Animal Samples	15794
Plant Samples	896
Total Samples	18861

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
22236			2	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM2462268v1 assembly for Enterococcus gallinarum DSM 28564	contig	GCA_024622685	1353.271	1353	68.14

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22236	Enterococcus sp. JM20 16S ribosomal RNA gene, partial sequence	KR364766	1412		1796630

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Enterococcus gallinarum DSM 28564
NCBI: GCA_024622685.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	84.71	no
125438	anaerobic	anaerobicⓘ	no	87.42	no
125438	aerobic	aerobicⓘ	no	93.61	yes
125438	spore-forming	spore-formingⓘ	no	71.33	no
125438	thermophilic	thermophileⓘ	no	93.92	yes
125438	flagellated	motile2+ⓘ	yes	58.50	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22236	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28564
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68381	Automatically annotated from API rID32STR .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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