Name: Streptomyces albidoflavus DSM 40394
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14903

Type strain:

Species: Streptomyces albidoflavus

Culture col. no.: DSM 40394, ATCC 25495, CBS 955.69, ETH 23691, IFO 13083, IMRU 3371, ISP 5394, JCM 4515, KCC S-0515, NBRC 13083, RIA 1275, BCRC 13705, KACC 20132, LMG 8574, NRRL B-12325, VKM Ac-851, VTT E-073026

Strain history: KCC S-0515 <-- IFO 13083 <-- SAJ <-- ISP 5394 <-- IMRU 3371 <-- W. A. Millard 8.

NCBI tax ID(s): 42239 (species), 1886 (species)

SI-ID 14079

LMG 8574, ATCC 25495, CCRC 13705, DSM 40394, IFO 13083, JCM 4515, NRRL B-12325, VKM Ac-851, CBS 955.69, NBRC 13083, BCRC 13705, KACC 20132, VTT E-073026

Other strains from Streptomyces albidoflavus

Section

Streptomyces albidoflavus DSM 40394 is a mesophilic bacterium that was isolated from potato scab.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces albidoflavus**
	Full Scientific Name (LPSN)	Streptomyces albidoflavus (Rossi Doria 1891) Waksman and Henrici 1948 (Approved Lists 1980)

	Synonym	Streptomyces griseus subsp. solvifaciens
	Synonym	Streptomyces limosus
	Synonym	"Actinomyces* sampsonii"*
	Synonym	"Actinomyces* globisporus subsp. caucasicus"*
	Synonym	"Cladothrix* odorifera"*
	Synonym	Streptomyces felleus
	Synonym	Streptomyces sampsonii
	Synonym	Streptomyces odorifer
	Synonym	Streptomyces coelicolor
	Synonym	"Streptothrix* coelicolor"*
	Synonym	"Streptotrix* albidoflava"*
	Synonym	Streptomyces globisporus subsp. caucasicus
	Synonym	Streptomyces canescens
	Synonym	Streptomyces champavatii

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9518]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9518]

Culture medium growth

[Ref.: #9518]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9518]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #9518]	growth	28 °C
[Ref.: #18588]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9518]	Temperature range	mesophilic
[Ref.: #18588]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18588]		NaCl		maximum	7.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18588]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18588]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #18588]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18588]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #18588]	mannitol ChEBI	+
[Ref.: #18588]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #18588]	raffinose ChEBI	-
[Ref.: #18588]	rhamnose ChEBI	-
[Ref.: #18588]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18588]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18588]	145	-	-	-	-	-	-	-	-	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9518]	Sample type/isolated from	potato scab
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Other	#Wound
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Z76680 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	5
Soil Samples	39
Animal Samples	85
Plant Samples
Total Samples	129

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18588]	Biosafety level	1	German classification
[Ref.: #9518]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #9518]	Streptomyces sampsonii 16S ribosomal RNA, complete sequence	D63871	1531	ENA	42239 tax ID
[Ref.: #20218]	S.sampsonii (DSM 40394T) 16S rRNA gene	Z76680	1476	ENA	42239 tax ID	*
[Ref.: #20218]	Streptomyces sampsonii strain DSM40394 16S-23S intergenic spacer region, partial sequence	AF363494	308	ENA	42239 tax ID	*
[Ref.: #20218]	Streptomyces sampsonii gene for 16S rRNA, partial sequence, strain: NBRC 13083	AB184299	1465	ENA	42239 tax ID	*
[Ref.: #20218]	Streptomyces sampsonii strain DSM 40394 clone ITS17 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY296953	283	ENA	42239 tax ID	*
[Ref.: #20218]	Streptomyces sampsonii strain DSM 40394 clone ITS1 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY296956	287	ENA	42239 tax ID	*
[Ref.: #20218]	Streptomyces sampsonii strain DSM 40394 clone ITS11 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY296957	284	ENA	42239 tax ID	*
[Ref.: #20218]	Streptomyces sampsonii strain DSM 40394 clone ITS17 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY296958	283	ENA	42239 tax ID	*
[Ref.: #20218]	Streptomyces sampsonii strain DSM 40394 clone ITS19 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY296959	285	ENA	42239 tax ID	*
[Ref.: #20218]	Streptomyces sampsonii strain DSM 40394 clone ITS4 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY296960	284	ENA	42239 tax ID	*
[Ref.: #20218]	Streptomyces sampsonii strain DSM 40394 clone ITS8 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY296961	284	ENA	42239 tax ID	*
[Ref.: #20218]	Streptomyces sampsonii 16S ribosomal RNA gene, partial sequence	EU928970	1385	ENA	42239 tax ID	*
[Ref.: #20218]	Streptomyces sampsonii gene for 16S ribosomal RNA, partial sequence, strain: JCM 4516	D44203	120	ENA	42239 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces albidoflavus NBRC 13083	GCA_004195755	contig	GenBank	1886 tax ID
[Ref.: #66792]	Streptomyces albidoflavus strain NBRC 13083	1886.39	wgs	PATRIC	1886 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces albidoflavus strain NBRC 13083 PATRIC: 1886.39
[Ref.: #69480]	motile	no	95.264	no
[Ref.: #69480]	gram-positive	yes	92.703	no
[Ref.: #69480]	anaerobic	no	99.301	no
[Ref.: #69480]	aerobic	yes	94.46	no
[Ref.: #69480]	halophile	no	87.947	no
[Ref.: #69480]	spore-forming	yes	94.747	no
[Ref.: #69480]	glucose-util	yes	89.152	yes
[Ref.: #69480]	flagellated	no	97.799	no
[Ref.: #69480]	thermophile	no	98.101	yes
[Ref.: #69480]	glucose-ferment	no	85.501	no

Availability in culture collections External links

[Ref.: #9518]

Culture collection no.

DSM 40394, ATCC 25495, CBS 955.69, ETH 23691, IFO 13083, IMRU 3371, ISP 5394, JCM 4515, KCC S-0515, NBRC 13083, RIA 1275, BCRC 13705, KACC 20132, LMG 8574, NRRL B-12325, VKM Ac-851, VTT E-073026

[Ref.: #84012]

SI-ID 14079

References

#9518

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40394

#18588

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#84012

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID14079.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces albidoflavus strain NBRC 13083

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