Name: Mycobacterium smegmatis DSM 43059
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 8309

Type strain:

Species: Mycobacterium smegmatis

Culture col. no.: DSM 43059, CCM 1889, IMRU N 525, NCTC 525, BUCSAV 267

Strain history: <- M. Kocur, CCM; CCM 1889 <- BICZAS; BUCSAV 267 <- VSCHT; (Mycobacterium phlei)

NCBI tax ID(s): 1772 (species)

SI-ID 50132

DSM 43059, CCM 1889, NCTC 525

Special Collections

DSMZ

Other strains from Mycobacterium smegmatis

Section

Mycobacterium smegmatis DSM 43059 is a human pathogen that was isolated from hay.

human pathogen
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium smegmatis**
	Full Scientific Name (LPSN)	Mycobacterium smegmatis (Trevisan 1889) Lehmann and Neumann 1899 (Approved Lists 1980)

	Synonym	"Bacillus* smegmatis"*
	Synonym	Mycolicibacterium smegmatis

Information on culture and growth conditions Culture and growth conditions

[Ref.: #10723]

Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

[Ref.: #10723]

Culture medium growth

[Ref.: #10723]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #10723]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %98

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10723]	Sample type/isolated from	hay
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body Product	#Plant	#Straw

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10723]	Pathogenicity (human)	yes
[Ref.: #10723]	Pathogenicity (animal)	yes
[Ref.: #10723]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mycolicibacterium smegmatis strain FDAARGOS_1484	1772.52	complete	PATRIC	1772 tax ID	*
[Ref.: #66792]	Mycolicibacterium smegmatis strain FDAARGOS_1484	1772.65	complete	PATRIC	1772 tax ID	*
[Ref.: #66792]	Mycolicibacterium smegmatis strain FDAARGOS_1484	1772.70	complete	PATRIC	1772 tax ID	*
[Ref.: #66792]	Mycolicibacterium smegmatis strain FDAARGOS_1484	1772.63	complete	PATRIC	1772 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mycolicibacterium smegmatis strain FDAARGOS_1484 strain Not applicable PATRIC: 1772.52
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	98	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycolicibacterium smegmatis strain FDAARGOS_1484 strain Not applicable PATRIC: 1772.52
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	88.681	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.697	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	60.988	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.62	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	87.371	no

Availability in culture collections External links

[Ref.: #10723]

Culture collection no.

DSM 43059, CCM 1889, IMRU N 525, NCTC 525, BUCSAV 267

[Ref.: #77711]

SI-ID 50132

References

#10723

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43059

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77711

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID50132.1 )

* These data were automatically processed and therefore are not curated

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Mycolicibacterium smegmatis strain FDAARGOS_1484 strain Not applicable

Mycolicibacterium smegmatis strain FDAARGOS_1484 strain Not applicable

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