Strain identifier
BacDive ID: 8309
Type strain: 
Species: Mycobacterium smegmatis
Strain history: <- M. Kocur, CCM; CCM 1889 <- BICZAS; BUCSAV 267 <- VSCHT; (Mycobacterium phlei)
NCBI tax ID(s): 1772 (species)
version 8.1 (current version)
General
@ref: 10723
BacDive-ID: 8309
DSM-Number: 43059
keywords: genome sequence, Bacteria, mesophilic, human pathogen
description: Mycobacterium smegmatis DSM 43059 is a mesophilic human pathogen that was isolated from hay.
NCBI tax id
- NCBI tax id: 1772
- Matching level: species
strain history
- @ref: 10723
- history: <- M. Kocur, CCM; CCM 1889 <- BICZAS; BUCSAV 267 <- VSCHT; (Mycobacterium phlei)
doi: 10.13145/bacdive8309.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium smegmatis
- full scientific name: Mycobacterium smegmatis (Trevisan 1889) Lehmann and Neumann 1899 (Approved Lists 1980)
synonyms
@ref synonym 20215 Bacillus smegmatis 20215 Mycolicibacterium smegmatis
@ref: 10723
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium smegmatis
full scientific name: Mycobacterium smegmatis (Trevisan 1889) Lehmann and Neumann 1899 emend. Nouioui et al. 2018
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 92.47 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 10723
- name: MIDDLEBROOK MEDIUM (DSMZ Medium 645)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium645.pdf
culture temp
- @ref: 10723
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 98 |
| 69480 | no | 99.558 |
Isolation, sampling and environmental information
isolation
- @ref: 10723
- sample type: hay
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body Product | #Plant | #Straw |
Safety information
risk assessment
- @ref: 10723
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mycolicibacterium smegmatis strain FDAARGOS_1484 | 1772.52 | complete | patric | 1772 |
| 66792 | Mycolicibacterium smegmatis strain FDAARGOS_1484 | 1772.65 | complete | patric | 1772 |
| 66792 | Mycolicibacterium smegmatis strain FDAARGOS_1484 | 1772.70 | complete | patric | 1772 |
| 66792 | Mycolicibacterium smegmatis strain FDAARGOS_1484 | 1772.63 | complete | patric | 1772 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 98 | no |
| motile | no | 90.761 | no |
| gram-positive | yes | 88.193 | no |
| anaerobic | no | 99.216 | no |
| aerobic | yes | 87.183 | no |
| halophile | no | 88.448 | no |
| spore-forming | no | 76.543 | no |
| thermophile | no | 99.273 | yes |
| glucose-util | yes | 90.758 | no |
| flagellated | no | 97.556 | no |
| glucose-ferment | no | 89.356 | no |
External links
@ref: 10723
culture collection no.: DSM 43059, CCM 1889, IMRU N 525, NCTC 525, BUCSAV 267
straininfo link
- @ref: 77711
- straininfo: 50132
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 10723 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43059) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43059 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 77711 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50132.1 | StrainInfo: A central database for resolving microbial strain identifiers |