Name: Mycobacterium smegmatis GA 735
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 8324

Type strain:

Species: Mycobacterium smegmatis

Strain Designation: GA 735, Cornell 3, 14 133 0010

Culture col. no.: DSM 43756, ATCC 19420, JCM 5866, KCTC 9108, NCTC 8159, CCUG 21002, CCUG 21815, CECT 3020, CIP 104444, JCM 6386, NRRL B-14616, VKM Ac-1239

Strain history: CIP <- 1995, V. Vincent, Inst. Pasteur, Paris, France: strain 14 133 0010 <- 1981, ATCC <- NCTC <- R.E. Gordon <- Hagan <- Alvarez and Tavel: strain Cornell 3

NCBI tax ID(s): 1772 (species)

SI-ID 36980

ATCC 19420, NCTC 8159, CCUG 21002, CCUG 21815, JCM 5866, CIP 104444, DSM 43756, KCTC 9108, VKM Ac-1239, CECT 3020, JCM 6386, NRRL B-14616, CNCTC 7294

Special Collections

Other strains from Mycobacterium smegmatis

Section

When using BacDive for research please cite our paper

Mycobacterium smegmatis GA 735 is an aerobe, mesophilic, Gram-positive human pathogen of the family Mycobacteriaceae.

Gram-positive
aerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium smegmatis**
	Full Scientific Name (LPSN)	Mycobacterium smegmatis (Trevisan 1889) Lehmann and Neumann 1899 (Approved Lists 1980)

	Synonym	"Bacillus* smegmatis"*
	Synonym	Mycolicibacterium smegmatis

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive
[Ref.: #125439]	Gram stain	positive Confidence in %95.5

[Ref.: #122643]	Cell shape	rod-shaped

[Ref.: #122643]	Motility	no

Multimedia content

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Intellectual property rights:

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Caption:

Medium 65 37°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11178]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

[Ref.: #41725]

Culture medium

MEDIUM 55 - for Mycobacterium

[Ref.: #41725]

Culture medium growth

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Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

CIP Medium 55

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #11178]		growth	37 °C
[Ref.: #41725]		growth	37 °C
[Ref.: #67770]		growth	37 °C
[Ref.: #67771]		growth	37 °C
[Ref.: #122643]		growth	30-45 °C
[Ref.: #122643]	no	growth	10 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #122643]	Oxygen tolerance	obligate aerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %98.9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #122643]	esculin ChEBI	+	hydrolysis
[Ref.: #122643]	nitrate ChEBI	+	reduction
[Ref.: #122643]	nitrate ChEBI	-	respiration
[Ref.: #122643]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #122643]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #122643]	amylase	-
[Ref.: #122643]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122643]	caseinase	-	3.4.21.50
[Ref.: #122643]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #122643]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #122643]	gelatinase	-
[Ref.: #122643]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #122643]	lipase	+
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122643]	oxidase	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #122643]	tween esterase	+
[Ref.: #122643]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #122643]	673	not determinedn.d.	+	+	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	+	-	-	+	+	+	-	+	+	+	-	-	-	-	+	-	+	+	-	-	+	-	-	-	+	+	+	-	-	-	-	+	+	+	+	-	-	+	-	-	-	-	-	-	+	-	-	+	-	+	-	-	+	-	-	-	+	+	-	+	-	+	-	-	-	+	-	+	+	-	+	-	+	+	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122643]	7958	-	+	+	+	+	+	+	+	+	-	+	+	-	-	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11178]	Geographic location (country and/or sea, region)	Plant Industry Station, Beltsville, Maryland
[Ref.: #11178]	Country	USA
[Ref.: #11178]	Country ISO 3 Code	USA
[Ref.: #11178]	Continent	North America
[Ref.: #11178]	Geographic location	39.0358°/-76.9175°
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11178]	Pathogenicity (human)	yes
[Ref.: #11178]	Pathogenicity (animal)	yes
[Ref.: #11178]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #122643]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Mycolicibacterium smegmatis strain ATCC 19420 16S ribosomal RNA (rrs), partial sequence	AF059846	175	GenBank ENA	1772 tax ID	*
[Ref.: #20218]	M.smegmatis (NCTC 8159) gene for 16S ribosomal RNA partial (207bp)	X76255	207	GenBank ENA	1772 tax ID	*
[Ref.: #20218]	M.smegmatis (NCTC 8159) gene for 16S ribosomal RNA partial (238bp)	X76256	238	GenBank ENA	1772 tax ID	*
[Ref.: #20218]	M.smegmatis (NCTC 8159) genes for 16S and 23s ribosomal RNA partial (381bp)	X76257	381	GenBank ENA	1772 tax ID	*
[Ref.: #20218]	Mycobacterium smegmatis 16S rRNA gene	AJ536041	1461	GenBank ENA	1772 tax ID	*
[Ref.: #20218]	Mycolicibacterium smegmatis strain ATCC 19420 16S ribosomal RNA gene, partial sequence	AY457078	1487	GenBank ENA	1772 tax ID	*
[Ref.: #20218]	Mycobacterium smegmatis strain DSM 43756 16S ribosomal RNA gene, partial sequence	KF410356	1368	GenBank ENA	1772 tax ID	*
[Ref.: #20218]	Mycobacterium smegmatis 16S rRNA gene, strain ATCC 19420	AJ131761	1487	GenBank ENA	1772 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mycolicibacterium smegmatis NCTC8159	GCA_001457595	complete	GenBank ENA	1772 tax ID	*
[Ref.: #66792]	Mycobacterium smegmatis strain NCTC8159	1772.19	complete	PATRIC	1772 tax ID	*
[Ref.: #66792]	Mycolicibacterium smegmatis NCTC8159	2657245626	complete	JGI IMG/M	1772 tax ID	*
[Ref.: #66792]	Mycolicibacterium smegmatis ATCC 19420	GCA_029222015	contig	GenBank ENA	1772 tax ID	*

[Ref.: #67770]

GC-content

67.3 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mycolicibacterium smegmatis NCTC8159 NCBI: GCA_001457595.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	88.681	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	94.697	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	89.611	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	60.488	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	97	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	87.371	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Mycobacterium smegmatis strain NCTC8159 PATRIC: 1772.19
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	62.9
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	74.5
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	95.5
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	98.9

Availability in culture collections External links

[Ref.: #11178]

Culture collection no.

DSM 43756, ATCC 19420, JCM 5866, KCTC 9108, NCTC 8159, CCUG 21002, CCUG 21815, CECT 3020, CIP 104444, JCM 6386, NRRL B-14616, VKM Ac-1239

[Ref.: #77726]

SI-ID 36980

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Crystal structure and biochemical characterization of O-acetylhomoserine acetyltransferase from Mycobacterium smegmatis ATCC 19420.	Sagong HY, Hong J, Kim KJ	Biochem Biophys Res Commun	10.1016/j.bbrc.2019.07.117	2019	*
Pathogenicity	New quinolin-4-yl-1,2,3-triazoles carrying amides, sulphonamides and amidopiperazines as potential antitubercular agents.	Thomas KD, Adhikari AV, Chowdhury IH, Sumesh E, Pal NK	Eur J Med Chem	10.1016/j.ejmech.2011.03.039	2011	*
Genetics	A rifampin-hypersensitive mutant reveals differences between strains of Mycobacterium smegmatis and presence of a novel transposon, IS1623.	Alexander DC, Jones JR, Liu J	Antimicrob Agents Chemother	10.1128/AAC.47.10.3208-3213.2003	2003	*
Enzymology	Panniculitis, due to Mycobacterium smegmatis, in two Finnish cats.	Alander-Damsten YK, Brander EE, Paulin LG	J Feline Med Surg	10.1053/jfms.2001.0189	2003	*
Pathogenicity	Characterization of In53, a class 1 plasmid- and composite transposon-located integron of Escherichia coli which carries an unusual array of gene cassettes.	Naas T, Mikami Y, Imai T, Poirel L, Nordmann P	J Bacteriol	10.1128/JB.183.1.235-249.2001	2001	*
Metabolism	Structures of ADP-ribosylated rifampicin and its metabolite: intermediates of rifampicin-ribosylation by Mycobacterium smegmatis DSM43756.	Morisaki N, Hashimoto Y, Furihata K, Imai T, Watanabe K, Mikami Y, Yazawa K, Ando A, Nagata Y, Dabbs ER	J Antibiot (Tokyo)	10.7164/antibiotics.53.269	2000	*
Metabolism	Identification and characterization of a new intermediate in the ribosylative inactivation pathway of rifampin by Mycobacterium smegmatis.	Imai T, Watanabe K, Mikami Y, Yazawa K, Ando A, Nagata Y, Morisaki N, Hashimoto Y, Furihata K, Dabbs ER	Microb Drug Resist	10.1089/mdr.1999.5.259	1999	*
Phylogeny	Mycobacterium wolinskyi sp. nov. and Mycobacterium goodii sp. nov., two new rapidly growing species related to Mycobacterium smegmatis and associated with human wound infections: a cooperative study from the International Working Group on Mycobacterial Taxonomy.	Brown BA, Springer B, Steingrube VA, Wilson RW, Pfyffer GE, Garcia MJ, Menendez MC, Rodriguez-Salgado B, Jost KC Jr, Chiu SH, Onyi GO, Bottger EC, Wallace RJ Jr	Int J Syst Bacteriol	10.1099/00207713-49-4-1493	1999	*
Enzymology	Pathogenicity of Mycobacterium fortuitum and Mycobacterium smegmatis to goldfish, Carassius auratus.	Talaat AM, Trucksis M, Kane AS, Reimschuessel R	Vet Microbiol	10.1016/s0378-1135(99)00002-4	1999	*
Metabolism	ADP-ribosylation as an intermediate step in inactivation of rifampin by a mycobacterial gene.	Quan S, Imai T, Mikami Y, Yazawa K, Dabbs ER, Morisaki N, Iwasaki S, Hashimoto Y, Furihata K	Antimicrob Agents Chemother	10.1128/AAC.43.1.181	1999	*
Genetics	Regulation of the inducible acetamidase gene of Mycobacterium smegmatis.	Parish T, Mahenthiralingam E, Draper P, Davis EO, Colston EO	Microbiology (Reading)	10.1099/00221287-143-7-2267	1997	*
Metabolism	Structure determination of ribosylated rifampicin and its derivative: new inactivated metabolites of rifampicin by mycobacterial strains.	Morisaki N, Kobayashi H, Iwasaki S, Furihata K, Dabbs ER, Yazawa K, Mikami Y	J Antibiot (Tokyo)	10.7164/antibiotics.48.1299	1995	*
Enzymology	Cloning and sequencing of the gene which encodes the highly inducible acetamidase of Mycobacterium smegmatis.	Mahenthiralingam E, Draper P, Davis EO, Colston MJ	J Gen Microbiol	10.1099/00221287-139-3-575	1993	*
Pathogenicity	Acanthamoeba polyphaga-enhanced growth of Mycobacterium smegmatis.	Lamrabet O, Mba Medie F, Drancourt M	PLoS One	10.1371/journal.pone.0029833	2012	*

References

#11178

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43756

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41725 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#77726

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID36980.1 )

#122643 Collection of Institut Pasteur ; Curators of the CIP; CIP 104444

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Search for species Mycobacterium smegmatis in external resources:
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Mycolicibacterium smegmatis NCTC8159

Mycobacterium smegmatis strain NCTC8159

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