Name: Pedobacter sp. L2b-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24547

Type strain:

Species: Pedobacter sp.

Strain Designation: L2b-1

Culture col. no.: DSM 22386, JCM 16320, KCTC 22701

Strain history: K.-S. Bae L2b-1 <-- W.-J. Jeong P-4.

NCBI tax ID(s): 1411316 (species)

SI-ID 403430

DSM 22386

Special Collections

Other strains from Pedobacter sp.

Section

When using BacDive for research please cite our paper

Pedobacter sp. L2b-1 is a mesophilic bacterium that was isolated from paddy soil.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Pedobacter*
	Full Scientific Name (LPSN)	Pedobacter Steyn et al. 1998

Synonym

Paradesertivirga

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20725]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #20725]

Culture medium growth

[Ref.: #20725]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20725]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20725]			growth	25-37 °C
[Ref.: #67770]			growth	25 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20725]	Sample type/isolated from	paddy soil
[Ref.: #20725]	Geographic location (country and/or sea, region)	Chungbuk, Ochang
[Ref.: #20725]	Country	Republic of Korea
[Ref.: #20725]	Country ISO 3 Code	KOR
[Ref.: #20725]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil in a potato field
[Ref.: #67770]	Geographic location (country and/or sea, region)	Ochang, Chungbuk
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Field
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Condition	#Anoxic (anaerobic)	-
#Condition	#Humid	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ377315 (>99% sequence identity) for Pedobacter mongoliensis subclade from Microbeatlas

Aquatic Samples	170
Soil Samples	1318
Animal Samples	235
Plant Samples	136
Total Samples	1859

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20725]	Pedobacter sp. L2b-1 16S ribosomal RNA gene, partial sequence	FJ377315	1413	GenBank ENA	572033 tax ID

[Ref.: #20725]

GC-content

37.8 mol%

Availability in culture collections External links

[Ref.: #20725]

Culture collection no.

DSM 22386, JCM 16320, KCTC 22701

[Ref.: #88402]

SI-ID 403430

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20725

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22386

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88402

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403430.1 )

* These data were automatically processed and therefore are not curated

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