Name: Pedobacter sp. L2b-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24547

Type strain:

Species: Pedobacter sp.

Strain Designation: L2b-1

Culture col. no.: DSM 22386, JCM 16320, KCTC 22701

Strain history: K.-S. Bae L2b-1 <-- W.-J. Jeong P-4.

NCBI tax ID(s): 1411316 (species)

SI-ID 403430

DSM 22386

Other strains from Pedobacter sp.

P. sp. GH09-10, DSM 18608, KACC 11647
P. sp. JS11-06, DSM 18611, KACC 11645
P. sp. DSM 12165, LMG 9525
P. sp. DSM 12166, LMG 9527
P. sp. DSM 12167, LMG 10351
P. sp. W6a-b1, DSM 22383, JCM 16321, KCTC ...
P. sp. N1b-b5, DSM 22384, JCM 16323, KCTC ...
P. sp. Leaf41, DSM 102672
P. sp. Leaf216, DSM 102673
P. sp. Leaf132, DSM 102674
P. sp. Leaf176, DSM 102675
P. sp. Leaf170, DSM 102676
P. sp. Leaf250, DSM 102677
P. sp. Leaf194, DSM 102678
P. sp. PB46, DSM 19485, KCTC 12509
P. sp. P2K-21, DSM 21669
P. sp. CCUG 57354
P. sp. AMD557, GW460-11-11-14-LB5, DSM ...
P. sp. JCM 10638
P. sp. JCM 16319, KCTC 22700
P. sp. JCM 16322, KCTC 22703
P. sp. JCM 16324, KCTC 22705
P. sp. JCM 16325, KCTC 22706
P. sp. JCM 16326, KCTC 22707
P. sp. JCM 17087
P. sp. JCM 17088
P. sp. JCM 17089
P. sp. JCM 17090
P. sp. JCM 17665
P. sp. T70, DSM 103183

Section

Pedobacter sp. L2b-1 is a mesophilic bacterium that was isolated from paddy soil.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Pedobacter*
	Full Scientific Name (LPSN)	Pedobacter Steyn et al. 1998

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20725]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #20725]

Culture medium growth

[Ref.: #20725]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20725]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20725]			growth	25-37 °C
[Ref.: #67770]			growth	25 °C

[Ref.: #20725]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20725]	Sample type/isolated from	paddy soil
[Ref.: #20725]	Geographic location (country and/or sea, region)	Chungbuk, Ochang
[Ref.: #20725]	Country	Republic of Korea
[Ref.: #20725]	Country ISO 3 Code	KOR
[Ref.: #20725]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil in a potato field
[Ref.: #67770]	Geographic location (country and/or sea, region)	Ochang, Chungbuk
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Field
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Condition	#Anoxic (anaerobic)	-
#Condition	#Humid	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ377315 (>99% sequence identity) for Pedobacter mongoliensis subclade from Microbeatlas

Aquatic Samples	170
Soil Samples	1318
Animal Samples	235
Plant Samples	136
Total Samples	1859

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20725]	Pedobacter sp. L2b-1 16S ribosomal RNA gene, partial sequence	FJ377315	1413	ENA	572033 tax ID

[Ref.: #20725]

GC-content

37.8 mol%

Availability in culture collections External links

[Ref.: #20725]

Culture collection no.

DSM 22386, JCM 16320, KCTC 22701

[Ref.: #88402]

SI-ID 403430

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20725

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22386

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88402

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403430.1 )

* These data were automatically processed and therefore are not curated

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