Name: Pedobacter sp. P2K-21
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132777

Type strain:

Species: Pedobacter sp.

Strain Designation: P2K-21

Culture col. no.: DSM 21669

Strain history: <- A. K. Borsodi, Eötvös Loránd Univ. Budapest, Hungary; P2K-21

NCBI tax ID(s): 1411316 (species)

SI-ID 405474

DSM 21669

Special Collections

DSMZ

Other strains from Pedobacter sp.

Section

Pedobacter sp. P2K-21 is a bacterium that was isolated from rhyzoplane of Nymphaea rubra.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Pedobacter*
	Full Scientific Name (LPSN)	Pedobacter Steyn et al. 1998

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24566]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #24566]

Culture medium growth

[Ref.: #24566]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24566]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24566]			growth	28 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24566]	Sample type/isolated from	rhyzoplane of Nymphaea rubra
[Ref.: #24566]	Host species	Nymphaea rubra
[Ref.: #24566]	Geographic location (country and/or sea, region)	Lake Hévíz
[Ref.: #24566]	Country	Hungary
[Ref.: #24566]	Country ISO 3 Code	HUN
[Ref.: #24566]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Aquatic plant
#Host Body-Site	#Plant	#Rhizoplane

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM980879 (>99% sequence identity) for Pedobacter from Microbeatlas

Aquatic Samples	1779
Soil Samples	865
Animal Samples	535
Plant Samples	266
Total Samples	3445

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24566]	Hevizibacter sp. P2K-21 partial 16S rRNA gene, isolate P2K-21	AM980879	1481	GenBank ENA	518703 tax ID

Availability in culture collections External links

[Ref.: #24566]

Culture collection no.

DSM 21669

[Ref.: #91075]

SI-ID 405474

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24566

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21669

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91075

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405474.1 )

* These data were automatically processed and therefore are not curated

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