Strain identifier

BacDive ID: 132777

Type strain: No

Species: Pedobacter sp.

Strain Designation: P2K-21

Strain history: <- A. K. Borsodi, Eötvös Loránd Univ. Budapest, Hungary; P2K-21

NCBI tax ID(s): 1411316 (species)

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General

@ref: 24566

BacDive-ID: 132777

DSM-Number: 21669

keywords: 16S sequence, Bacteria

description: Pedobacter sp. P2K-21 is a bacterium that was isolated from rhyzoplane of Nymphaea rubra.

NCBI tax id

  • NCBI tax id: 1411316
  • Matching level: species

strain history

  • @ref: 24566
  • history: <- A. K. Borsodi, Eötvös Loránd Univ. Budapest, Hungary; P2K-21

doi: 10.13145/bacdive132777.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Sphingobacteriia
  • order: Sphingobacteriales
  • family: Sphingobacteriaceae
  • genus: Pedobacter
  • species: Pedobacter sp.
  • full scientific name: Pedobacter Steyn et al. 1998

@ref: 24566

domain: Bacteria

phylum: Bacteroidetes

class: Sphingobacteriia

order: Sphingobacteriales

family: Sphingobacteriaceae

genus: Pedobacter

species: Pedobacter sp.

full scientific name: Pedobacter sp.

strain designation: P2K-21

type strain: no

Culture and growth conditions

culture medium

  • @ref: 24566
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

  • @ref: 24566
  • growth: positive
  • type: growth
  • temperature: 28

Isolation, sampling and environmental information

isolation

  • @ref: 24566
  • sample type: rhyzoplane of Nymphaea rubra
  • host species: Nymphaea rubra
  • geographic location: Lake Hévíz
  • country: Hungary
  • origin.country: HUN
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Aquatic plant
#Host Body-Site#Plant#Rhizoplane

taxonmaps

  • @ref: 69479
  • File name: preview.99_112018.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_115;96_3026;97_3717;98_4712;99_112018&stattab=map
  • Last taxonomy: Pedobacter
  • 16S sequence: AM980879
  • Sequence Identity:
  • Total samples: 3445
  • soil counts: 865
  • aquatic counts: 1779
  • animal counts: 535
  • plant counts: 266

Sequence information

16S sequences

  • @ref: 24566
  • description: Hevizibacter sp. P2K-21 partial 16S rRNA gene, isolate P2K-21
  • accession: AM980879
  • length: 1481
  • database: nuccore
  • NCBI tax ID: 518703

External links

@ref: 24566

culture collection no.: DSM 21669

straininfo link

  • @ref: 91075
  • straininfo: 405474

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24566Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-21669Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21669)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91075Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405474.1