Cite this strain

Pedobacter sp. (JCM 10638)

Name: Pedobacter sp. (JCM 10638)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 161010

Type strain

Culture col. no. JCM 10638

NCBI tax ID(s) 1411316

Special Collections JCM

History JCM <-- Y. Doi KP-2.

Links

JCM 10638 is a bacterium that was isolated from Water of the Arakawa River.

16S sequence Bacteria

Name and taxonomic classification

SI-ID 131715

JCM 10638

@ref 20215

Last LPSN update 2026-05-29 08:44:34

Domain Bacteria

Phylum Bacteroidota

Class Sphingobacteriia

Order Sphingobacteriales

Family Sphingobacteriaceae

Genus Pedobacter

Full scientific name Pedobacter Steyn et al. 1998

Synonyms (2)

Nubsella
Paradesertivirga

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	25

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Water of the Arakawa River	Saitama Pref.	Japan	JPN	Asia

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Pedobacter sp. KP-2 16S rRNA, partial sequence	AB033630	1000		106111

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Microbial degradation of poly(aspartic acid) by two isolated strains of Pedobacter sp. and Sphingomonas sp.	Tabata K, Abe H, Doi Y	Biomacromolecules	10.1021/bm9900038	2000

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pedobacter sp. (JCM 10638)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

16S sequences

Genome-based predictions

Literature

Literature

References

BacDive

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