Name: Pedobacter sp. JCM 10638
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 161010

Type strain:

Species: Pedobacter sp.

Culture col. no.: JCM 10638

Strain history: Y. Doi KP-2.

NCBI tax ID(s): 1411316 (species)

Other strains from Pedobacter sp.

P. sp. GH09-10, DSM 18608, KACC 11647
P. sp. JS11-06, DSM 18611, KACC 11645
P. sp. DSM 12165, LMG 9525
P. sp. DSM 12166, LMG 9527
P. sp. DSM 12167, LMG 10351
P. sp. W6a-b1, DSM 22383, JCM 16321, KCTC ...
P. sp. N1b-b5, DSM 22384, JCM 16323, KCTC ...
P. sp. L2b-1, DSM 22386, JCM 16320, KCTC ...
P. sp. Leaf41, DSM 102672
P. sp. Leaf216, DSM 102673
P. sp. Leaf132, DSM 102674
P. sp. Leaf176, DSM 102675
P. sp. Leaf170, DSM 102676
P. sp. Leaf250, DSM 102677
P. sp. Leaf194, DSM 102678
P. sp. PB46, DSM 19485, KCTC 12509
P. sp. P2K-21, DSM 21669
P. sp. CCUG 57354
P. sp. AMD557, GW460-11-11-14-LB5, DSM ...
P. sp. JCM 16319, KCTC 22700
P. sp. JCM 16322, KCTC 22703
P. sp. JCM 16324, KCTC 22705
P. sp. JCM 16325, KCTC 22706
P. sp. JCM 16326, KCTC 22707
P. sp. JCM 17087
P. sp. JCM 17088
P. sp. JCM 17089
P. sp. JCM 17090
P. sp. JCM 17665
P. sp. T70, DSM 103183

Section

Pedobacter sp. JCM 10638 is a mesophilic bacterium that was isolated from Water of the Arakawa River.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Pedobacter*
	Full Scientific Name (LPSN)	Pedobacter Steyn et al. 1998

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Water of the Arakawa River
[Ref.: #67770]	Geographic location (country and/or sea, region)	Saitama Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pedobacter sp. KP-2 16S rRNA, partial sequence	AB033630	1000	ENA	106111 tax ID

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 10638

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Microbial degradation of poly(aspartic acid) by two isolated strains of Pedobacter sp. and Sphingomonas sp.	Tabata K, Abe H, Doi Y	Biomacromolecules	10.1021/bm9900038	2000	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Pedobacter sp. in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF