Cite this strain

Pedobacter sp. (JCM 17087)

Name: Pedobacter sp. (JCM 17087)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 161925

Type strain

Culture col. no. JCM 17087

NCBI tax ID(s) 1411316

Special Collections JCM

History JCM <-- W.-T. Im PBI 90.

Links

JCM 17087 is a bacterium that was isolated from Soil.

16S sequence Bacteria

Name and taxonomic classification

SI-ID 131587

JCM 17087

@ref 20215

Last LPSN update 2026-05-29 08:44:48

Domain Bacteria

Phylum Bacteroidota

Class Sphingobacteriia

Order Sphingobacteriales

Family Sphingobacteriaceae

Genus Pedobacter

Full scientific name Pedobacter Steyn et al. 1998

Synonyms (2)

Nubsella
Paradesertivirga

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	30

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Soil	Daejeon	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence HM204916 (>99% sequence identity) for Pedobacter from Microbeatlas

Aquatic Samples	130
Soil Samples	446
Animal Samples	733
Plant Samples	169
Total Samples	1478

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Pedobacter sp. PBI 90 16S ribosomal RNA gene, partial sequence	HM204916	1470		862133

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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