Name: Pedobacter sp. JCM 17087
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 161925

Type strain:

Species: Pedobacter sp.

Culture col. no.: JCM 17087

Strain history: W.-T. Im PBI 90.

NCBI tax ID(s): 1411316 (species)

Special Collections

Other strains from Pedobacter sp.

Section

Pedobacter sp. JCM 17087 is a bacterium that was isolated from Soil.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Pedobacter*
	Full Scientific Name (LPSN)	Pedobacter Steyn et al. 1998

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Daejeon
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence HM204916 (>99% sequence identity) for Pedobacter from Microbeatlas

Aquatic Samples	130
Soil Samples	446
Animal Samples	733
Plant Samples	169
Total Samples	1478

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pedobacter sp. PBI 90 16S ribosomal RNA gene, partial sequence	HM204916	1470	GenBank ENA	862133 tax ID

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 17087

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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Search for species Pedobacter sp. in external resources:
SILVA
BRENDA
PANGAEA
GBIF