Strain identifier
BacDive ID: 161925
Type strain: 
Species: Pedobacter sp.
Strain history: W.-T. Im PBI 90.
NCBI tax ID(s): 1411316 (species)
version 9.2 (current version)
General
@ref: 67770
BacDive-ID: 161925
keywords: 16S sequence, Bacteria, mesophilic
description: Pedobacter sp. JCM 17087 is a mesophilic bacterium that was isolated from Soil.
NCBI tax id
- NCBI tax id: 1411316
- Matching level: species
strain history
- @ref: 67770
- history: W.-T. Im PBI 90.
doi: 10.13145/bacdive161925.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Sphingobacteriia
- order: Sphingobacteriales
- family: Sphingobacteriaceae
- genus: Pedobacter
- species: Pedobacter sp.
- full scientific name: Pedobacter Steyn et al. 1998
synonyms
- @ref: 20215
- synonym: Paradesertivirga
@ref: 67770
domain: Bacteria
phylum: Bacteroidetes
class: Sphingobacteriia
order: Sphingobacteriales
family: Sphingobacteriaceae
genus: Pedobacter
species: Pedobacter sp.
full scientific name: Pedobacter sp.
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Soil
- geographic location: Daejeon
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_4057.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_115;96_1456;97_1737;98_3071;99_4057&stattab=map
- Last taxonomy: Pedobacter
- 16S sequence: HM204916
- Sequence Identity:
- Total samples: 1478
- soil counts: 446
- aquatic counts: 130
- animal counts: 733
- plant counts: 169
Sequence information
16S sequences
- @ref: 67770
- description: Pedobacter sp. PBI 90 16S ribosomal RNA gene, partial sequence
- accession: HM204916
- length: 1470
- database: nuccore
- NCBI tax ID: 862133
External links
@ref: 67770
culture collection no.: JCM 17087
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |