Name: Burkholderia cepacia 8
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1910

Type strain:

Species: Burkholderia cepacia

Strain Designation: 8

Culture col. no.: DSM 50181, ATCC 17759, ICPB 2745-382, NCIB 9085, JCM 2799, AJ 2404, CCUG 18838, CCUG 2855, CECT 322, KCTC 2504, LMG 1275, LMG 2161, NCIMB 9085, NCTC 10661

Strain history: K. Komagata KS 0052 <-- AJ 2404 <-- ATCC 17759 <-- R. Y. Stanier 382.

NCBI tax ID(s): 292 (species)

SI-ID 3949

LMG 2161, ATCC 17759, CCM 2656, CCUG 2855, CECT 322, IMET 11156, JCM 2799, LMG 1275, NCIB 9085, NCTC 10661, ICMP 8655, CCUG 18838, NCIMB 9085, CFBP 2234, KCTC 2504, NCCB 93063, LMD 93.63, CGMCC 1.2787, CFBP 3824, DSM 50181, NCPPB 4248

Special Collections

Other strains from Burkholderia cepacia

Section

Burkholderia cepacia 8 is a Gram-negative human pathogen that was isolated from forest soil.

Gram-negative
human pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Burkholderia*
	Species	**Burkholderia cepacia**
	Full Scientific Name (LPSN)	Burkholderia cepacia (Palleroni and Holmes 1981 ex Burkholder 1950) Yabuuchi et al. 1993

Synonym

Pseudomonas cepacia

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %97.969

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12672]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #12672]

Culture medium growth

[Ref.: #12672]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12672]

Culture medium composition

expand / minimize

[Ref.: #12672]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #12672]

Culture medium growth

[Ref.: #12672]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12672]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #12672]			growth	30 °C
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %91.809

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

[Ref.: #12672]

Name of produced compound

polyhydroxyalkanoic acids

[Ref.: #67770]

Observation

quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #12672]	24772	-	-	-	-	-	+	+	+	+	+	+	+	+	-	+	+	+	+	+	+	+
[Ref.: #12672]	24138	-	-	-	-	-	+	+	+	+	+	+	+	+	-	+	+	+	+	+	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12672]	Sample type/isolated from	forest soil
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X87275 (>99% sequence identity) for Burkholderia from Microbeatlas

Aquatic Samples	564
Soil Samples	1055
Animal Samples	1930
Plant Samples	1505
Total Samples	5054

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12672]	Pathogenicity (human)	yes
[Ref.: #12672]	Pathogenicity (animal)	yes
[Ref.: #12672]	Pathogenicity (plant)	yes
[Ref.: #12672]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Burkholderia cepacia JCM 2799 gene for 16S ribosomal RNA, partial sequence	LC420064	1455	GenBank ENA	292 tax ID
[Ref.: #20218]	B.cepacia 16S rRNA gene	X87275	1535	GenBank ENA	292 tax ID	*
[Ref.: #20218]	Burkholderia cepacia strain ATCC 17759 16S ribosomal RNA gene, partial sequence	AY741334	1485	GenBank ENA	292 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Burkholderia cepacia NCTC10661	GCA_900446185	contig	GenBank ENA	292 tax ID	*
[Ref.: #66792]	Burkholderia cepacia ATCC 17759	GCA_002906895	scaffold	GenBank ENA	292 tax ID	*
[Ref.: #66792]	Burkholderia cepacia strain ATCC 17759	292.135	wgs	PATRIC	292 tax ID	*
[Ref.: #66792]	Burkholderia cepacia strain NCTC10661	292.149	wgs	PATRIC	292 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Burkholderia cepacia strain NCTC10661 PATRIC: 292.149
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Burkholderia cepacia ATCC 17759 NCBI: GCA_002906895.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.969	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.639	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	91.809	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	84.884	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	83.682	no

Availability in culture collections External links

[Ref.: #12672]

Culture collection no.

DSM 50181, ATCC 17759, ICPB 2745-382, NCIB 9085, JCM 2799, AJ 2404, CCUG 18838, CCUG 2855, CECT 322, KCTC 2504, LMG 1275, LMG 2161, NCIMB 9085, NCTC 10661

[Ref.: #71555]

SI-ID 3949

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Burkholderia cepacia ATCC 17759, a Polyhydroxybutyrate-Co-Valerate Copolymer-Producing Bacterium.	Crooks C, Palmer JM, Lindner DL	Genome Announc	10.1128/genomeA.00348-18	2018	*
Pathogenicity	Inhibition of bacterial biofilms by carboxymethyl chitosan combined with silver, zinc and copper salts.	Goncalves RC, da Silva DP, Signini R, Naves PLF	Int J Biol Macromol	10.1016/j.ijbiomac.2017.07.048	2017	*
Metabolism	Estimation of inhibitory effects of hemicellulosic wood hydrolysate inhibitors on PHA production by Burkholderia cepacia ATCC 17759 using response surface methodology.	Pan W, Nomura CT, Nakas JP	Bioresour Technol	10.1016/j.biortech.2012.08.107	2012	*
Metabolism	Production of polyhydroxyalkanoates by Burkholderia cepacia ATCC 17759 using a detoxified sugar maple hemicellulosic hydrolysate.	Pan W, Perrotta JA, Stipanovic AJ, Nomura CT, Nakas JP	J Ind Microbiol Biotechnol	10.1007/s10295-011-1040-6	2011	*
Metabolism	Production and characterization of poly-3-hydroxybutyrate from biodiesel-glycerol by Burkholderia cepacia ATCC 17759.	Zhu C, Nomura CT, Perrotta JA, Stipanovic AJ, Nakas JP	Biotechnol Prog	10.1002/btpr.355	2010	*
Pathogenicity	Invasion of human type II pneumocytes by Burkholderia cepacia.	Keig PM, Ingham E, Kerr KG	Microb Pathog	10.1006/mpat.2000.0418	2001	*
Enzymology	The use of detergent-based aqueous two-phase systems for the isolation of extracellular proteins: purification of a lipase from Pseudomonas cepacia.	Terstappen GC, Geerts AJ, Kula MR	Biotechnol Appl Biochem		1992	*
Metabolism	Regulation of pyrimidine biosynthesis in Pseudomonas cepacia.	West TP, Chu CP	Arch Microbiol	10.1007/BF00276539	1990	*
Pathogenicity	[Isolation of an antibacterial active tropolone from a Pseudomonas cepacia strain].	Korth H, Brusewitz G, Pulverer G	Zentralbl Bakteriol Mikrobiol Hyg A		1982	*
Metabolism	Pyrimidine synthesis in Burkholderia cepacia ATCC 25416.	Li K, West TP	Lett Appl Microbiol	10.1111/j.1472-765x.1995.tb01075.x	1995	*
Metabolism	Ornibactin production and transport properties in strains of Burkholderia vietnamiensis and Burkholderia cepacia (formerly Pseudomonas cepacia).	Meyer JM, Van VT, Stintzi A, Berge O, Winkelmann G	Biometals	10.1007/BF00141604	1995	*
	[Comparative studies of the filtration behavior of bacteria and organic particles in porous groundwater conductors. Fundamentals and methods].	Matthess G, Bedbur E, Gundermann KO, Loof M, Peters D	Zentralbl Hyg Umweltmed		1991	*

References

#12672

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 50181

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71555

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID3949.1 )

* These data were automatically processed and therefore are not curated

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Burkholderia cepacia strain NCTC10661

Burkholderia cepacia ATCC 17759

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