Burkholderia gladioli (DSM 4285, ATCC 10248, CIP 105410)

Name: Burkholderia gladioli (DSM 4285, ATCC 10248, CIP 105410)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1911

Type strain

Strain Designation PM 107

Culture col. no. DSM 4285 ATCC 10248 CIP 105410 ICPB PM 107 IFO 13700 10 more

NCBI tax ID(s) 1218079 28095

Special Collections DSMZ CCUG CIP JMRC

History DSMZ <- D. Stead, NCPPB; NCPPB 1891 <- ICPB; ICPB PM 107 <- NRRL; NRRL B-793 (Pseudomonas marginata) CIP <- 1998, DSM <- NCPPB <- ICPB: strain PM 107 <- NRRL: strain B-793, "Pseudomonas marginata"

Links

Burkholderia gladioli PM 107 is an aerobe, Gram-negative, motile plant pathogen that was isolated from Gladiolus sp..

Gram-negative motile rod-shaped aerobe plant pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 4102

LMG 2216,ATCC 10248,CCUG 1782,ICMP 3950,IFO 13700,NCPPB 1891,NRRL B-793,PDDCC 3950,NBIMCC 8569,CIP 105410,DSM 4285,JCM 9311,VKM B-1298,CECT 4148,CCRC 13899,CFBP 2427,KCTC 2967,NBRC 13700,NCTC 12378,CCM 4984,NCCB 95036,LMD 95.36,NCCB 38018,HAMBI 2157,BCRC 13899,KACC 10142,NCAIM B.01198,CGMCC 1.3360,VTT E-012026

@ref 20215

Last LPSN update 2026-05-29 08:25:22

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Burkholderia

Species Burkholderia gladioli

Full scientific name Burkholderia gladioli (Severini 1913) Yabuuchi et al. 1993

Synonyms (4)

Burkholderia cocovenenans
Pseudomonas cocovenenans
Pseudomonas antimicrobica
Pseudomonas gladioli

BacDive ID	Other strains from **Burkholderia gladioli** (30)	Type strain
1912	B. gladioli B, DSM 8361, NCIMB 9898, CIP 106719, LMG ...
1913	B. gladioli DSM 11318, ATCC 33664, LMAU P25, LMD 38.18, ...
141471	B. gladioli CCUG 2115, NCPPB 947, ATCC 19302
141518	B. gladioli CCUG 2521, NRRL B-823
143142	B. gladioli CCUG 17408
145410	B. gladioli CCUG 28387
150142	B. gladioli CCUG 39083
151945	B. gladioli CCUG 45297
154819	B. gladioli CCUG 55339
155185	B. gladioli CCUG 56840
155416	B. gladioli CCUG 57668
155485	B. gladioli CCUG 57849
155503	B. gladioli CCUG 57904
155527	B. gladioli CCUG 58012
155588	B. gladioli CCUG 58270
155601	B. gladioli CCUG 58326
155673	B. gladioli CCUG 58893
155909	B. gladioli CCUG 59624
155914	B. gladioli CCUG 59633
156106	B. gladioli CCUG 60387
156500	B. gladioli CCUG 62197
156653	B. gladioli CCUG 63897 Q
157312	B. gladioli IMI 347513
157313	B. gladioli IMI 386805
157314	B. gladioli IMI 386806
157315	B. gladioli IMI 347515
157316	B. gladioli IMI 347514
174603	B. gladioli Dres_BurkGlad_02, DSM 108055
174604	B. gladioli Dres_BurkGlad_03, DSM 114172
174605	B. gladioli 114783, DSM 114783

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
119637	negative	rod-shaped
125438	negative		98.469
125439	negative		91.022

Colony morphology

1642

Incubation period1-2 days

Pigmentation

@ref	Production	Name
119637		Pyocyanin

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
1642	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
32729	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
1642	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
119637	CIP Medium 72	Medium recipe at CIP
119637	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
1642	positive	growth	30
32729	positive	growth	30
44421	positive	growth	28-37
119637	positive	growth	10-41
119637	negative	growth	5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
44421	aerobe
119637	obligate aerobe
125438	aerobe	91.219
125439	obligate aerobe	93.017

Spore formation

@ref	Spore formation	Confidence
125439		98.897

Halophily

@ref	Salt	Growth	Tested relation	Concentration
119637	NaCl	positive	growth	0-2 %
119637	NaCl		growth	4 %
119637	NaCl		growth	6 %
119637	NaCl		growth	8 %
119637	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	+	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
119637	16947 ChEBI	citrate	+	carbon source
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
119637	4853 ChEBI	esculin	-	hydrolysis
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
119637	17632 ChEBI	nitrate	-	reduction
119637	17632 ChEBI	nitrate	-	respiration
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
119637	16301 ChEBI	nitrite	-	reduction
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
119637	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE
119637	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
119637	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
119637	amylase	-
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
119637	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119637	caseinase	+	3.4.21.50
1642	catalase	+	1.11.1.6
119637	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
1642	cytochrome-c oxidase	+	1.9.3.1
119637	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
119637	gelatinase	+
119637	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
119637	lipase	+
68382	lipase (C 14)	+		from API zym
119637	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119637	ornithine decarboxylase	-	4.1.1.17
119637	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
119637	tryptophan deaminase	-
119637	tween esterase	-
119637	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119637	-	+	+	+	+	+	-	-	-	-	+	+	-	-	-	-	+	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
1642	-	-	-	-	-	-	+	+	+	+	+	+	+	-	+	+	+	+	+	+	+
1642	-	-	-	-	-	-	-	+	+	+	+	+	+	-	+	+	+	+	+	+	+

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
119637	not determinedn.d.	+	+	+	+	+	-	-	-	-	-	-	-	-	+	-	-	-	-	-	+	+	+	-	-	+	-	+	-	-	+	+	+	+	+	-	-	+	+	-	+	-	-	-	+	+	+	+	+	+	+	+	+	-	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	-	-	-	+	-	+	-	+	+	+	+	+	+	-	+	-	+	-	+	-	+	+	+	+	+	+	+	+	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
44421	Gladiolus sp.	USA	USA	North America
1642	bulbs of "Gladiolus sp."

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
1642		2	Risk group (German classification) According to TRBA 466
119637		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM95972v1 assembly for Burkholderia gladioli ATCC 10248	complete	GCA_000959725	28095.12	2639762983	28095	95.92
66792	ASM73975v1 assembly for Burkholderia gladioli NBRC 13700	contig	GCA_000739755	1218079.3	2600255057	1218079	39.87

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Burkholderia gladioli gene for 16S rRNA, partial sequence, strain: NBRC 13700	AB680484	1458	28095
20218	Burkholderia gladioli pv. gladioli strain NCPPB1891 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence	EF552070	715	32009
20218	Pseudomonas gladioli 16S ribosomal RNA (16S rRNA) gene, transfer RNA-Ile (tRNA-Ile) gene, transfer RNA-Ala (tRNA-Ala) gene, 23S ribosomal RNA (23S rRNA) gene	L28156	770	28095
20218	Pseudomonas gladioli 16S ribosomal RNA (16S rRNA) gene, transfer RNA-Ile (tRNA-Ile) gene, transfer RNA-Ala (tRNA-Ala) gene, 23S ribosomal RNA (23S rRNA) gene	L28157	737	28095
20218	P.gladioli 16S ribosomal RNA	X67038	1467	28095
1642	Burkholderia gladioli strain CIP 105410 16S ribosomal RNA gene, partial sequence	EU024168	1313	28095
124043	Burkholderia gladioli pv. gladioli DNA for 16S ribosomal RNA and 23S ribosomal RNA, partial sequence.	D87081	605	28095
124043	Burkholderia gladioli strain LMG 2216 16S ribosomal RNA gene, partial sequence.	HQ849083	1124	28095
124043	Burkholderia gladioli strain LMG 2216 16S ribosomal RNA gene, partial sequence.	MH748601	1434	28095

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM95972v1 assembly for Burkholderia gladioli ATCC 10248
BV-BRC: 28095.12

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.02	no
125439	gram_stain	BacteriaNetⓘ	negative	91.02	no
125439	motility	BacteriaNetⓘ	yes	72.27	no
125439	spore_formation	BacteriaNetⓘ	no	98.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Burkholderia gladioli ATCC 10248
NCBI: GCA_000959725.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.47	no
125438	anaerobic	anaerobicⓘ	no	97.91	yes
125438	aerobic	aerobicⓘ	yes	91.22	yes
125438	spore-forming	spore-formingⓘ	no	87.55	no
125438	thermophilic	thermophileⓘ	no	97.49	yes
125438	flagellated	motile2+ⓘ	yes	84.07	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Comparison of Mast Burkholderia Cepacia, Ashdown + Gentamicin, and Burkholderia Pseudomallei Selective Agar for the Selective Growth of Burkholderia Spp.	Edler C, Derschum H, Kohler M, Neubauer H, Frickmann H, Hagen RM.	Eur J Microbiol Immunol (Bp)	10.1556/1886.2016.00037	2017
Phylogeny	Discrimination of Burkholderia gladioli from other Burkholderia species detectable in cystic fibrosis patients by PCR.	Bauernfeind A, Schneider I, Jungwirth R, Roller C.	J Clin Microbiol	10.1128/jcm.36.9.2748-2751.1998	1998
Phylogeny	Molecular procedure for rapid detection of Burkholderia mallei and Burkholderia pseudomallei.	Bauernfeind A, Roller C, Meyer D, Jungwirth R, Schneider I.	J Clin Microbiol	10.1128/jcm.36.9.2737-2741.1998	1998
Phylogeny	Discrimination of Burkholderia multivorans and Burkholderia vietnamiensis from Burkholderia cepacia genomovars I, III, and IV by PCR.	Bauernfeind A, Schneider I, Jungwirth R, Roller C.	J Clin Microbiol	10.1128/jcm.37.5.1335-1339.1999	1999
Phylogeny	Evaluation of matrix-assisted laser desorption ionization-time-of-flight mass spectrometry in comparison to 16S rRNA gene sequencing for species identification of nonfermenting bacteria.	Mellmann A, Cloud J, Maier T, Keckevoet U, Ramminger I, Iwen P, Dunn J, Hall G, Wilson D, Lasala P, Kostrzewa M, Harmsen D.	J Clin Microbiol	10.1128/jcm.00157-08	2008
Enzymology	Direct ribosome isolation from soil to extract bacterial rRNA for community analysis.	Felske A, Engelen B, Nubel U, Backhaus H.	Appl Environ Microbiol	10.1128/aem.62.11.4162-4167.1996	1996
Enzymology	Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients.	Heuer H, Krsek M, Baker P, Smalla K, Wellington EM.	Appl Environ Microbiol	10.1128/aem.63.8.3233-3241.1997	1997
	The development of Burkholderia bacteria as heterologous hosts.	Heard SC, Eustaquio AS.	Nat Prod Rep	10.1039/d5np00024f	2025
Genetics	The Genomic-Driven Discovery of Glutarimide-Containing Derivatives from Burkholderia gladioli.	Chen H, Bai X, Sun T, Wang X, Zhang Y, Bian X, Zhou H.	Molecules	10.3390/molecules28196937	2023
	Identification of Burkholderia gladioli pv. cocovenenans in Black Fungus and Efficient Recognition of Bongkrekic Acid and Toxoflavin Producing Phenotype by Back Propagation Neural Network.	Niu C, Song X, Hao J, Zhao M, Yuan Y, Liu J, Yue T.	Foods	10.3390/foods13020351	2024
	Unlocking hidden treasures: the evolution of high-throughput mass spectrometry in screening for cryptic natural products.	Covington BC, Seyedsayamdost MR.	Nat Prod Rep	10.1039/d4np00026a	2025
Genetics	Pan-Genome Analysis Reveals Host-Specific Functional Divergences in Burkholderia gladioli.	Lee HH, Park J, Jung H, Seo YS.	Microorganisms	10.3390/microorganisms9061123	2021
	Biotechnology approaches for natural product discovery, engineering, and production based on Burkholderia bacteria.	Adaikpoh BI, Fernandez HN, Eustaquio AS.	Curr Opin Biotechnol	10.1016/j.copbio.2022.102782	2022
	Draft Genome Sequence of Burkholderia gladioli Coa14, a Bacterium with Petroleum Bioremediation Potential Isolated from Coari Lake, Amazonas, Brazil.	Lopes EF, Da Costa JG, Wolf IR, Lima JPA, Astolfi-Filho S.	Genome Announc	10.1128/genomea.00301-18	2018
Metabolism	Fungicidal Activity of Volatile Organic Compounds Emitted by Burkholderia gladioli Strain BBB-01.	Lin YT, Lee CC, Leu WM, Wu JJ, Huang YC, Meng M.	Molecules	10.3390/molecules26030745	2021
Genetics	Comparative Genome Analyses Provide Insight into the Antimicrobial Activity of Endophytic Burkholderia.	Jia J, Lu SE.	Microorganisms	10.3390/microorganisms12010100	2024
	Nigrospora oryzae Causing Leaf Spot Disease on Chrysanthemum × morifolium Ramat and Screening of Its Potential Antagonistic Bacteria.	Sha H, Liu X, Xiao X, Zhang H, Gu X, Chen W, Mao B.	Microorganisms	10.3390/microorganisms11092224	2023
	Burkholderia gladioli CGB10: A Novel Strain Biocontrolling the Sugarcane Smut Disease.	Cui G, Yin K, Lin N, Liang M, Huang C, Chang C, Xi P, Deng YZ.	Microorganisms	10.3390/microorganisms8121943	2020
	Genomics-based Sensitive and Specific Novel Primers for Simultaneous Detection of Burkholderia glumae and Burkholderia gladioli in Rice Seeds.	Lee C, Lee HH, Mannaa M, Kim N, Park J, Kim J, Seo YS.	Plant Pathol J	10.5423/ppj.oa.07.2018.0136	2018
Phylogeny	Kill and cure: genomic phylogeny and bioactivity of Burkholderia gladioli bacteria capable of pathogenic and beneficial lifestyles.	Jones C, Webster G, Mullins AJ, Jenner M, Bull MJ, Dashti Y, Spilker T, Parkhill J, Connor TR, LiPuma JJ, Challis GL, Mahenthiralingam E.	Microb Genom	10.1099/mgen.0.000515	2021
	An inventory of early branch points in microbial phosphonate biosynthesis.	Li S, Horsman GP.	Microb Genom	10.1099/mgen.0.000781	2022
Metabolism	Whole-Genome Shotgun Sequencing of Two beta-Proteobacterial Species in Search of the Bulgecin Biosynthetic Cluster.	Horsman ME, Marous DR, Li R, Oliver RA, Byun B, Emrich SJ, Boggess B, Townsend CA, Mobashery S.	ACS Chem Biol	10.1021/acschembio.7b00687	2017
Genetics	A Phylogeny-Informed Proteomics Approach for Species Identification within the Burkholderia cepacia Complex.	Wang H, Cisse OH, Bolig T, Drake SK, Chen Y, Strich JR, Youn JH, Okoro U, Rosenberg AZ, Sun J, LiPuma JJ, Suffredini AF, Dekker JP.	J Clin Microbiol	10.1128/jcm.01741-20	2020
Genetics	Horizontal Gene Transfer to a Defensive Symbiont with a Reduced Genome in a Multipartite Beetle Microbiome.	Waterworth SC, Florez LV, Rees ER, Hertweck C, Kaltenpoth M, Kwan JC.	mBio	10.1128/mbio.02430-19	2020
	Complete genome sequences for 59 burkholderia isolates, both pathogenic and near neighbor.	Johnson SL, Bishop-Lilly KA, Ladner JT, Daligault HE, Davenport KW, Jaissle J, Frey KG, Koroleva GI, Bruce DC, Coyne SR, Broomall SM, Li PE, Teshima H, Gibbons HS, Palacios GF, Rosenzweig CN, Redden CL, Xu Y, Minogue TD, Chain PS.	Genome Announc	10.1128/genomea.00159-15	2015
Phylogeny	Microbiological and epidemiological features of clinical respiratory isolates of Burkholderia gladioli.	Segonds C, Clavel-Batut P, Thouverez M, Grenet D, Le Coustumier A, Plesiat P, Chabanon G.	J Clin Microbiol	10.1128/jcm.02489-08	2009
Genetics	The combination of functional metagenomics and an oil-fed enrichment strategy revealed the phylogenetic diversity of lipolytic bacteria overlooked by the cultivation-based method.	Narihiro T, Suzuki A, Yoshimune K, Hori T, Hoshino T, Yumoto I, Yokota A, Kimura N, Kamagata Y.	Microbes Environ	10.1264/jsme2.me14002	2014
Phylogeny	Fluorescence in situ hybridization for rapid identification of Achromobacter xylosoxidans and Alcaligenes faecalis recovered from cystic fibrosis patients.	Wellinghausen N, Wirths B, Poppert S.	J Clin Microbiol	10.1128/jcm.00508-06	2006
	In silico design and validation of a highly degenerate primer pair: a systematic approach.	Chukwuemeka PO, Umar HI, Olukunle OF, Oretade OM, Olowosoke CB, Akinsola EO, Elabiyi MO, Kurmi UG, Eigbe JO, Oyelere BR, Isunu LE, Oretade OJ.	J Genet Eng Biotechnol	10.1186/s43141-020-00086-y	2020
Phylogeny	Distinguishing species of the Burkholderia cepacia complex and Burkholderia gladioli by automated ribotyping.	Brisse S, Verduin CM, Milatovic D, Fluit A, Verhoef J, Laevens S, Vandamme P, Tummler B, Verbrugh HA, van Belkum A.	J Clin Microbiol	10.1128/jcm.38.5.1876-1884.2000	2000
	Evaluation of three oligonucleotide primer sets in PCR for the identification of Burkholderia cepacia and their differentiation from Burkholderia gladioli.	Clode FE, Kaufmann ME, Malnick H, Pitt TL.	J Clin Pathol	10.1136/jcp.52.3.173	1999
	Burkholderia cepacia Complex Contact-Dependent Growth Inhibition Systems Mediate Interbacterial Competition.	Myers-Morales T, Oates AE, Byrd MS, Garcia EC.	J Bacteriol	10.1128/jb.00012-19	2019
Phylogeny	Species-specific PCR as a tool for the identification of Burkholderia gladioli.	Whitby PW, Pope LC, Carter KB, LiPuma JJ, Stull TL.	J Clin Microbiol	10.1128/jcm.38.1.282-285.2000	2000
Metabolism	Rational construction of genome-reduced Burkholderiales chassis facilitates efficient heterologous production of natural products from proteobacteria.	Liu J, Zhou H, Yang Z, Wang X, Chen H, Zhong L, Zheng W, Niu W, Wang S, Ren X, Zhong G, Wang Y, Ding X, Muller R, Zhang Y, Bian X.	Nat Commun	10.1038/s41467-021-24645-0	2021
Cultivation	Identification of Burkholderia cepacia isolates from patients with cystic fibrosis and use of a simple new selective medium.	Henry DA, Campbell ME, LiPuma JJ, Speert DP.	J Clin Microbiol	10.1128/jcm.35.3.614-619.1997	1997
	Microbial pathogenesis in cystic fibrosis: mucoid Pseudomonas aeruginosa and Burkholderia cepacia.	Govan JR, Deretic V.	Microbiol Rev	10.1128/mr.60.3.539-574.1996	1996
Phylogeny	Molecular and Biochemical Characterization, Antimicrobial Activity, Stress Tolerance, and Plant Growth-Promoting Effect of Endophytic Bacteria Isolated from Wheat Varieties.	Shah D, Khan MS, Aziz S, Ali H, Pecoraro L.	Microorganisms	10.3390/microorganisms10010021	2021
	An Isolated Arthrobacter sp. Enhances Rice (Oryza sativa L.) Plant Growth.	Chhetri G, Kim I, Kang M, So Y, Kim J, Seo T.	Microorganisms	10.3390/microorganisms10061187	2022
	Metabolic Footprints of Burkholderia Sensu Lato Rhizosphere Bacteria Active against Maize Fusarium Pathogens.	Barrera-Galicia GC, Peniche-Pavia HA, Pena-Cabriales JJ, Covarrubias SA, Vera-Nunez JA, Delano-Frier JP.	Microorganisms	10.3390/microorganisms9102061	2021
Genetics	Comparative genome analysis of rice-pathogenic Burkholderia provides insight into capacity to adapt to different environments and hosts.	Seo YS, Lim JY, Park J, Kim S, Lee HH, Cheong H, Kim SM, Moon JS, Hwang I.	BMC Genomics	10.1186/s12864-015-1558-5	2015
	Retrospective survey of Dickeya fangzhongdai using a novel validated real-time PCR assay.	Alic S, Bacnik K, Dreo T.	Front Microbiol	10.3389/fmicb.2023.1249955	2023
Enzymology	Detection of Ralstonia solanacearum, which causes brown rot of potato, by fluorescent in situ hybridization with 23S rRNA-targeted probes.	Wullings BA, Van Beuningen AR, Janse JD, Akkermans AD.	Appl Environ Microbiol	10.1128/aem.64.11.4546-4554.1998	1998
Phylogeny	Novel pan-genomic analysis approach in target selection for multiplex PCR identification and detection of Burkholderia pseudomallei, Burkholderia thailandensis, and Burkholderia cepacia complex species: a proof-of-concept study.	Ho CC, Lau CC, Martelli P, Chan SY, Tse CW, Wu AK, Yuen KY, Lau SK, Woo PC.	J Clin Microbiol	10.1128/jcm.01702-10	2011
	Validation and Application of a Real-time PCR Protocol for the Specific Detection and Quantification of Clavibacter michiganensis subsp. sepedonicus in Potato.	Cho MS, Park DH, Namgung M, Ahn TY, Park DS.	Plant Pathol J	10.5423/ppj.oa.02.2015.0019	2015
	Novel Conopeptides of Largely Unexplored Indo Pacific Conus sp.	Lebbe EK, Ghequire MG, Peigneur S, Mille BG, Devi P, Ravichandran S, Waelkens E, D'Souza L, De Mot R, Tytgat J.	Mar Drugs	10.3390/md14110199	2016
Genetics	Multilocus sequence typing breathes life into a microbial metagenome.	Mahenthiralingam E, Baldwin A, Drevinek P, Vanlaere E, Vandamme P, LiPuma JJ, Dowson CG.	PLoS One	10.1371/journal.pone.0000017	2006
Phylogeny	Development of a recA gene-based identification approach for the entire Burkholderia genus.	Payne GW, Vandamme P, Morgan SH, Lipuma JJ, Coenye T, Weightman AJ, Jones TH, Mahenthiralingam E.	Appl Environ Microbiol	10.1128/aem.71.7.3917-3927.2005	2005
Metabolism	Bacterial community dynamics during start-up of a trickle-bed bioreactor degrading aromatic compounds.	Stoffels M, Amann R, Ludwig W, Hekmat D, Schleifer KH.	Appl Environ Microbiol	10.1128/aem.64.3.930-939.1998	1998
Enzymology	Culture-based and non-growth-dependent detection of the Burkholderia cepacia complex in soil environments.	Miller SC, LiPuma JJ, Parke JL.	Appl Environ Microbiol	10.1128/aem.68.8.3750-3758.2002	2002
	First Report of Leaf Spot of Dieffenbachia picta and Aglaonema commutatum Caused by Burkholderia gladioli in Argentina.	Alippi AM, Lopez AC.	Plant Dis	10.1094/pdis-93-5-0550c	2009
Genetics	Genomics-Driven Activation of Silent Biosynthetic Gene Clusters in Burkholderia gladioli by Screening Recombineering System.	Chen H, Sun T, Bai X, Yang J, Yan F, Yu L, Tu Q, Li A, Tang Y, Zhang Y, Bian X, Zhou H	Molecules	10.3390/molecules26030700	2021
Phylogeny	[Genetic characterization of rice endophytic bacteria (Oryza sativa L.) with antimicrobial activity against Burkholderia glumae].	Valdez-Nunez RA, Rios-Ruiz WF, Ormeno-Orrillo E, Torres-Chavez EE, Torres-Delgado J	Rev Argent Microbiol	10.1016/j.ram.2019.12.002	2020
Metabolism	A novel esterase from Burkholderia gladioli which shows high deacetylation activity on cephalosporins is related to beta-lactamases and DD-peptidases.	Petersen EI, Valinger G, Solkner B, Stubenrauch G, Schwab H	J Biotechnol	10.1016/s0168-1656(01)00284-x	2001
Genetics	Structural studies of the O-specific side-chain of lipopolysaccharide from Burkholderia gladioli pv. gladioli strain NCPPB 1891.	Galbraith L, Wilkinson SG	Carbohydr Res	10.1016/s0008-6215(97)00158-4	1997
Phylogeny	Burkholderia perseverans sp. nov., a bacterium isolated from the Restinga ecosystem, is a producer of volatile and diffusible compounds that inhibit plant pathogens.	Andrade JP, de Souza HG, Ferreira LC, Cnockaert M, De Canck E, Wieme AD, Peeters C, Gross E, De Souza JT, Marbach PAS, Goes-Neto A, Vandamme P	Braz J Microbiol	10.1007/s42770-021-00560-w	2021

References

#1642	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4285
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the JMRC: Jena Microbial Resource Collection (JMRC):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#32729	; Curators of the CIP;
#44421	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 1782
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#119637	Collection of Institut Pasteur ; Curators of the CIP; CIP 105410
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Burkholderia gladioli (DSM 4285, ATCC 10248, CIP 105410)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

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Physiology and metabolism

Oxygen tolerance

Spore formation

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Metabolite utilization

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