Name: Bifidobacterium breve JCM 7017
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 165454

Type strain:

Species: Bifidobacterium breve

Culture col. no.: JCM 7017

Strain history: Y. Benno <-- T. Mitsuoka IV-17 (30019 N32-701).

NCBI tax ID(s): 1385939 (strain), 1685 (species)

SI-ID 64956

JCM 7017

Special Collections

Other strains from Bifidobacterium breve

Section

Bifidobacterium breve JCM 7017 is an anaerobe, Gram-positive bacterium that was isolated from Human feces.

Gram-positive
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Bifidobacteriales*
	Family	*Bifidobacteriaceae*
	Genus	*Bifidobacterium*
	Species	**Bifidobacterium breve**
	Full Scientific Name (LPSN)	Bifidobacterium breve Reuter 1963 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Motility	no Confidence in %90

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Human feces
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #124043]	Bifidobacterium breve gene for 16S rRNA, partial sequence, strain: JCM 7017.	AB507087	664	GenBank ENA	1685 tax ID	*
[Ref.: #124043]	Bifidobacterium breve strain JCM 7017 16S ribosomal RNA gene, partial sequence.	AF491835	1454	GenBank ENA	1685 tax ID	*
[Ref.: #124043]	Bifidobacterium breve gene for 16S rRNA, partial sequence, strain: JCM 7017.	AB116291	480	GenBank ENA	1685 tax ID	*
[Ref.: #124043]	Bifidobacterium breve JCM 7017 gene for 16S rRNA, partial sequence.	LC638735	1466	GenBank ENA	1685 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bifidobacterium breve JCM 7017	GCA_000568975	complete	GenBank ENA	1385939 tax ID	*
[Ref.: #66792]	Bifidobacterium breve JCM 7017	1385939.3	complete	PATRIC	1385939 tax ID	*
[Ref.: #66792]	Bifidobacterium breve JCM 7017	2565956584	complete	JGI IMG/M	1385939 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bifidobacterium breve JCM 7017 JCM 7017 NCBI: GCA_000568975.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bifidobacterium breve JCM 7017 JCM 7017 NCBI: GCA_000568975.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	87.922	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	83.494	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	92.051	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.266	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	91.987	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 7017

[Ref.: #114475]

SI-ID 64956

Literature:

Only first 10 entries are displayed. Click here to see all.

	Title	Authors	Journal	DOI	Year
Phylogeny	Extraction of the same novel homoglycan mixture from two different strains of Bifidobacterium animalis and three strains of Bifidobacterium breve.	Alhudhud M, Sadiq S, Ngo HN, Hidalgo-Cantabrana C, Ruas-Madiedo P, van Sinderen D, Humphreys PN, Laws AP	Benef Microbes	10.3920/BM2017.0145	2018	*
Genetics	Discovery of a conjugative megaplasmid in Bifidobacterium breve.	Bottacini F, O'Connell Motherway M, Casey E, McDonnell B, Mahony J, Ventura M, van Sinderen D	Appl Environ Microbiol	10.1128/AEM.02871-14	2014	*
Metabolism	Overcoming the restriction barrier to plasmid transformation and targeted mutagenesis in Bifidobacterium breve UCC2003.	O'Connell Motherway M, O'Driscoll J, Fitzgerald GF, Van Sinderen D	Microb Biotechnol	10.1111/j.1751-7915.2008.00071.x	2008	*
Pathogenicity	Yoghurt fermented by Lactobacillus delbrueckii subsp. bulgaricus H+ -ATPase-defective mutants exhibits enhanced viability of Bifidobacterium breve during storage.	Ongol MP, Sawatari Y, Ebina Y, Sone T, Tanaka M, Tomita F, Yokota A, Asano K	Int J Food Microbiol	10.1016/j.ijfoodmicro.2007.02.019	2007	*
	Bifidobacterium breve Exopolysaccharide Blocks Dendritic Cell Maturation and Activation of CD4(+) T Cells.	Hickey A, Stamou P, Udayan S, Ramon-Vazquez A, Esteban-Torres M, Bottacini F, Woznicki JA, Hughes O, Melgar S, Ventura M, Van Sinderen D, Rossini V, Nally K	Front Microbiol	10.3389/fmicb.2021.653587	2021	*
	Molecular analysis of the replication functions of the bifidobacterial conjugative megaplasmid pMP7017.	Dineen RL, Penno C, Kelleher P, Bourin MJB, O'Connell-Motherway M, van Sinderen D	Microb Biotechnol	10.1111/1751-7915.13810	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#114475

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID64956.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Bifidobacterium breve JCM 7017 JCM 7017

Bifidobacterium breve JCM 7017 JCM 7017

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