Bifidobacterium breve (CCUG 5862, NCTC 10471)

Name: Bifidobacterium breve (CCUG 5862, NCTC 10471)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 141735

Type strain

Culture col. no. CCUG 5862 NCTC 10471

NCBI tax ID(s) 1685

Special Collections CCUG

Links

Bifidobacterium breve CCUG 5862 is an anaerobe, mesophilic prokaryote that was isolated from Human feces,infant.

anaerobe mesophilic genome sequence

Name and taxonomic classification

SI-ID 92167

LMG 11040,CCUG 5862,NCIMB 8807,NCTC 10471,NCFB 1452,NCIB 8807,NCDO1452,NCIMB 701452,KCTC 3441,CCRC 12584,BCRC 12584

@ref 20215

Last LPSN update 2025-12-16 10:03:56

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Bifidobacteriales

Family Bifidobacteriaceae

Genus Bifidobacterium

Species Bifidobacterium breve

Full scientific name Bifidobacterium breve Reuter 1963 (Approved Lists 1980)

BacDive ID	Other strains from **Bifidobacterium breve** (35)	Type strain
1695	B. breve S1, DSM 20213, ATCC 15700, NCTC 11815, JCM ... (type strain)
1696	B. breve S50 (Variant a), S50, DSM 20091, ATCC 15698, ...
134790	B. breve 17c, CIP 64.68, ATCC 15699, CCUG 45221
137497	B. breve S46, CIP 64.70, ATCC 15701, JCM 7016, BCRC ...
138672	B. breve 755-84, CIP 101158
143052	B. breve CCUG 16568
143053	B. breve CCUG 16569
144929	B. breve CCUG 27171 A
146282	B. breve CCUG 30785
146947	B. breve CCUG 32526 B
147417	B. breve CCUG 33558
147864	B. breve CCUG 34405
148335	B. breve CCUG 35244
148336	B. breve CCUG 35245
150885	B. breve CCUG 42620
150897	B. breve CCUG 42657
151165	B. breve CCUG 43395 A
151166	B. breve CCUG 43395 B
151681	B. breve CCUG 44623
152514	B. breve CCUG 46983
152771	B. breve CCUG 47591
152812	B. breve CCUG 47672
152865	B. breve CCUG 47820
152875	B. breve CCUG 47844
153826	B. breve CCUG 51291
154347	B. breve CCUG 53196
154385	B. breve CCUG 53338
154927	B. breve CCUG 55738
154963	B. breve CCUG 55883
155699	B. breve CCUG 59045
155780	B. breve CCUG 59290
165454	B. breve JCM 7017
165455	B. breve JCM 7019
165456	B. breve JCM 7020
176408	B. breve HUN447, RP2, DSM 118819

Morphology

Cell morphology

@ref	Motility	Confidence
125438		90

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
44864	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

44864

Oxygen toleranceanaerobe

Spore formation

@ref	Spore formation	Confidence
125439		97.3

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68381	40585 ChEBI	alpha-cyclodextrin	-	builds acid from	from API rID32STR
68381	29016 ChEBI	arginine	-	hydrolysis	from API rID32STR
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68381	18333 ChEBI	D-arabitol	-	builds acid from	from API rID32STR
68381	16899 ChEBI	D-mannitol	-	builds acid from	from API rID32STR
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68380	16024 ChEBI	D-mannose	+	fermentation	from API rID32A
68381	16988 ChEBI	D-ribose	+	builds acid from	from API rID32STR
68379	16988 ChEBI	D-ribose	+	fermentation	from API Coryne
68381	16443 ChEBI	D-tagatose	-	builds acid from	from API rID32STR
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	+	hydrolysis	from API Coryne
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68381	28087 ChEBI	glycogen	-	builds acid from	from API rID32STR
68379	28087 ChEBI	glycogen	+	fermentation	from API Coryne
68381	606565 ChEBI	hippurate	-	hydrolysis	from API rID32STR
68381	30849 ChEBI	L-arabinose	-	builds acid from	from API rID32STR
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68381	17716 ChEBI	lactose	+	builds acid from	from API rID32STR
68379	17716 ChEBI	lactose	+	fermentation	from API Coryne
68381	17306 ChEBI	maltose	+	builds acid from	from API rID32STR
68379	17306 ChEBI	maltose	+	fermentation	from API Coryne
68381	6731 ChEBI	melezitose	+	builds acid from	from API rID32STR
68381	28053 ChEBI	melibiose	+	builds acid from	from API rID32STR
68381	320055 ChEBI	methyl beta-D-glucopyranoside	-	builds acid from	from API rID32STR
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
68381	27941 ChEBI	pullulan	-	builds acid from	from API rID32STR
68380	16634 ChEBI	raffinose	+	fermentation	from API rID32A
68381	16634 ChEBI	raffinose	+	builds acid from	from API rID32STR
68381	30911 ChEBI	sorbitol	-	builds acid from	from API rID32STR
68381	17992 ChEBI	sucrose	-	builds acid from	from API rID32STR
68379	17992 ChEBI	sucrose	+	fermentation	from API Coryne
68381	27082 ChEBI	trehalose	+	builds acid from	from API rID32STR
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68381	16199 ChEBI	urea	-	hydrolysis	from API rID32STR
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68381	15688 ChEBI	acetoin		from API rID32STR
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68381	15688 ChEBI	acetoin	-		from API rID32STR
68380	35581 ChEBI	indole		-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
68381	Alanyl-Phenylalanyl-Proline arylamidase	+		from API rID32STR
68381	alkaline phosphatase	-	3.1.3.1	from API rID32STR
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68381	alpha-galactosidase	+	3.2.1.22	from API rID32STR
68380	alpha-galactosidase	+	3.2.1.22	from API rID32A
68380	alpha-glucosidase	+	3.2.1.20	from API rID32A
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68381	arginine dihydrolase	-	3.5.3.6	from API rID32STR
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68381	beta-galactosidase	+	3.2.1.23	from API rID32STR
68379	beta-galactosidase	+	3.2.1.23	from API Coryne
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68381	beta-glucosidase	+	3.2.1.21	from API rID32STR
68379	beta-glucosidase	+	3.2.1.21	from API Coryne
68380	beta-glucosidase	+	3.2.1.21	from API rID32A
68381	beta-glucuronidase	-	3.2.1.31	from API rID32STR
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68381	beta-mannosidase	-	3.2.1.25	from API rID32STR
68379	catalase	-	1.11.1.6	from API Coryne
68379	gelatinase	-		from API Coryne
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68381	glycyl tryptophan arylamidase	-		from API rID32STR
68380	histidine arylamidase	+		from API rID32A
68380	L-arginine arylamidase	+		from API rID32A
68380	leucine arylamidase	+	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68381	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32STR
68380	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API rID32A
68379	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API Coryne
68380	phenylalanine arylamidase	+		from API rID32A
68380	proline-arylamidase	+	3.4.11.5	from API rID32A
68379	pyrazinamidase	+	3.5.1.B15	from API Coryne
68381	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32STR
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	+		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	+		from API rID32A
68381	urease	-	3.5.1.5	from API rID32STR
68380	urease	-	3.5.1.5	from API rID32A
68379	urease	-	3.5.1.5	from API Coryne

Fatty acid profile

Metadata FA analysis

@ref

44864

Fatty acid	Percentage	ECL
C18:1 ω9c	30.3	17.769
C16:0	29.4	16
C14:0	10.6	14
C18:1 ω9c DMA	10.6	18.226
C18:0	8.8	18
C18:2 ω6,9c/C18:0 ANTE	4.1	17.724
C16:1 ω9c	2.6	15.774
unknown 16.754	1.3	16.754
C13:0 3OH/C15:1 i I/H	1.3	14.469
C12:0	1.1	12

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
44864	-	+	-	-	-	+	+	+	+	-	-	-	not determinedn.d.	+	-	-	+	+	+	+	-

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
44864	-	-	+	+	-	+	+	-	-	+	+	+	-	-	-	-	-	+	+	-	+	+	-	+	-	-	+	-	+

API rID32STR

@ref	ADH (Arg)	beta GLU	beta GAR	beta GUR	alpha GAL	PAL	RIB	MAN	SOR	LAC	TRE	RAF	SAC	LARA	DARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	HIP	GLYG	PUL	MAL	MEL	MLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	TAG	beta MAN	URE
44864	-	+	+	-	+	-	+	-	-	+	+	+	-	-	-	-	-	+	+	-	-	-	-	-	-	+	+	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	#Child
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Infection	#Patient	-

Isolation

@ref	Sample type	Sampling date
44864	Human feces,infant(nursling faeces)	1956

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	55147_E01 assembly for Bifidobacterium bifidum NCTC10471	contig	GCA_900445665	1681.109	1681	26.24

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bifidobacterium bifidum NCTC10471
NCBI: GCA_900445665

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.30	no
125439	motility	BacteriaNetⓘ	no	57.80	no
125439	gram_stain	BacteriaNetⓘ	positive	77.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	65.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bifidobacterium bifidum strain NCTC10471
PATRIC: 1681.109

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.08	no
125438	anaerobic	anaerobicⓘ	yes	83.09	yes
125438	spore-forming	spore-formingⓘ	no	85.87	no
125438	aerobic	aerobicⓘ	no	92.16	yes
125438	thermophilic	thermophileⓘ	no	92.47	yes
125438	flagellated	motile2+ⓘ	no	90.00	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#44864	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 5862
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68379	Automatically annotated from API Coryne .
#68380	Automatically annotated from API rID32A .
#68381	Automatically annotated from API rID32STR .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Bifidobacterium breve (CCUG 5862, NCTC 10471)

Name and taxonomic classification