Bifidobacterium breve (DSM 20213, ATCC 15700, NCTC 11815)

Name: Bifidobacterium breve (DSM 20213, ATCC 15700, NCTC 11815)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1695

Type strain

Strain Designation S1

Culture col. no. DSM 20213 ATCC 15700 NCTC 11815 S1 NCFB 2257 12 more

NCBI tax ID(s) 518634 1685

Special Collections DSMZ CCUG JCM KCTC CIP

History <- G. Reuter, S1 ATCC 15700 <-- G. Reuter S1 (Variant a). CIP <- 1964, Lab. Ident. Inst. Pasteur, Paris, France <- M. Sebald, Inst. Pasteur, Paris, France <- H. Werner <- G. Reuter: strain S1

Links

Bifidobacterium breve S1 is an anaerobe, mesophilic, Gram-positive prokaryote that was isolated from intestine of infant.

Gram-positive rod-shaped anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 92168

LMG 11042,ATCC 15700,CCRC 11846,CCUG 18365,CCUG 30511,DSM 20213,JCM 1192,LMG 10501,NCFB 2257,NCTC 11815,LMG 13208,NBIMCC 9012,NCDO 2257,NCIMB 702257,CECT 4839,KCTC 3220,AS 1.2213,CCUG 30511 A,BCRC 11846,HAMBI 558,NCAIM B.01820,NRRL B-41408,CGMCC 1.2213,VTT E-981075,CIP 64.69

@ref 20215

Last LPSN update 2025-12-16 09:47:10

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Bifidobacteriales

Family Bifidobacteriaceae

Genus Bifidobacterium

Species Bifidobacterium breve

Full scientific name Bifidobacterium breve Reuter 1963 (Approved Lists 1980)

BacDive ID	Other strains from **Bifidobacterium breve** (35)	Type strain
1696	B. breve S50 (Variant a), S50, DSM 20091, ATCC 15698, ...
134790	B. breve 17c, CIP 64.68, ATCC 15699, CCUG 45221
137497	B. breve S46, CIP 64.70, ATCC 15701, JCM 7016, BCRC ...
138672	B. breve 755-84, CIP 101158
141735	B. breve CCUG 5862, NCTC 10471
143052	B. breve CCUG 16568
143053	B. breve CCUG 16569
144929	B. breve CCUG 27171 A
146282	B. breve CCUG 30785
146947	B. breve CCUG 32526 B
147417	B. breve CCUG 33558
147864	B. breve CCUG 34405
148335	B. breve CCUG 35244
148336	B. breve CCUG 35245
150885	B. breve CCUG 42620
150897	B. breve CCUG 42657
151165	B. breve CCUG 43395 A
151166	B. breve CCUG 43395 B
151681	B. breve CCUG 44623
152514	B. breve CCUG 46983
152771	B. breve CCUG 47591
152812	B. breve CCUG 47672
152865	B. breve CCUG 47820
152875	B. breve CCUG 47844
153826	B. breve CCUG 51291
154347	B. breve CCUG 53196
154385	B. breve CCUG 53338
154927	B. breve CCUG 55738
154963	B. breve CCUG 55883
155699	B. breve CCUG 59045
155780	B. breve CCUG 59290
165454	B. breve JCM 7017
165455	B. breve JCM 7019
165456	B. breve JCM 7020
176408	B. breve HUN447, RP2, DSM 118819

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
117003	positive	rod-shaped
125438				91

Colony morphology

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
8482	BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)	Medium recipe at MediaDive	Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water
42088	MEDIUM 20 - for Anaerobic bacteria		Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
117003	CIP Medium 20	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
8482	positive	growth	37	mesophilic
42088	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

8482

Oxygen toleranceanaerobe

Spore formation

@ref	Spore formation	Confidence
125439		90.9

Murein

@ref	Murein short key	Type
8482	A11.01	A3alpha L-Lys-Gly

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	+	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
117003	4853 ChEBI	esculin	+	hydrolysis
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	+	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
117003	17632 ChEBI	nitrate	-	reduction
117003	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	+	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	+	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	ChEBI	Metabolite	Is sensitive	Is resistant
117003	6909	metronidazole

Metabolite production

@ref	Chebi-ID	Metabolite	Production
117003	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
117003	amylase	-
68382	beta-galactosidase	+	3.2.1.23	from API zym
117003	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
117003	caseinase	+	3.4.21.50
117003	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
117003	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
117003	gelatinase	-
117003	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
117003	lipase	-
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
117003	oxidase	-
117003	protease	-
68382	trypsin	-	3.4.21.4	from API zym
117003	tween esterase	-
117003	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	ppGpp biosynthesis	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	adipate degradation	100	2 of 2
66794	vitamin B1 metabolism	100	13 of 13
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	starch degradation	100	10 of 10
66794	acetoin degradation	100	3 of 3
66794	L-lactaldehyde degradation	100	3 of 3
66794	pentose phosphate pathway	90.91	10 of 11
66794	threonine metabolism	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	palmitate biosynthesis	86.36	19 of 22
66794	photosynthesis	85.71	12 of 14
66794	glycogen metabolism	80	4 of 5
66794	valine metabolism	77.78	7 of 9
66794	NAD metabolism	77.78	14 of 18
66794	sulfopterin metabolism	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	Entner Doudoroff pathway	70	7 of 10
66794	phenylalanine metabolism	69.23	9 of 13
66794	degradation of sugar alcohols	68.75	11 of 16
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	formaldehyde oxidation	66.67	2 of 3
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	IAA biosynthesis	66.67	2 of 3
66794	serine metabolism	66.67	6 of 9
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	tetrahydrofolate metabolism	64.29	9 of 14
66794	purine metabolism	62.77	59 of 94
66794	gluconeogenesis	62.5	5 of 8
66794	isoleucine metabolism	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	methionine metabolism	61.54	16 of 26
66794	glutamate and glutamine metabolism	60.71	17 of 28
66794	lipoate biosynthesis	60	3 of 5
66794	pyrimidine metabolism	60	27 of 45
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	oxidative phosphorylation	59.34	54 of 91
66794	glycolysis	58.82	10 of 17
66794	d-mannose degradation	55.56	5 of 9
66794	histidine metabolism	55.17	16 of 29
66794	alanine metabolism	55.17	16 of 29
66794	vitamin B6 metabolism	54.55	6 of 11
66794	d-xylose degradation	54.55	6 of 11
66794	metabolism of disaccharids	54.55	6 of 11
66794	leucine metabolism	53.85	7 of 13
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	ribulose monophosphate pathway	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	tryptophan metabolism	50	19 of 38
66794	coenzyme A metabolism	50	2 of 4
66794	butanoate fermentation	50	2 of 4
66794	cysteine metabolism	50	9 of 18
66794	ketogluconate metabolism	50	4 of 8
66794	phenylmercury acetate degradation	50	1 of 2
66794	citric acid cycle	50	7 of 14
66794	degradation of pentoses	46.43	13 of 28
66794	proline metabolism	45.45	5 of 11
66794	lipid metabolism	45.16	14 of 31
66794	non-pathway related	44.74	17 of 38
66794	degradation of hexoses	44.44	8 of 18
66794	propanol degradation	42.86	3 of 7
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	tyrosine metabolism	42.86	6 of 14
66794	glutathione metabolism	42.86	6 of 14
66794	arginine metabolism	41.67	10 of 24
66794	lysine metabolism	40.48	17 of 42
66794	cellulose degradation	40	2 of 5
66794	vitamin K metabolism	40	2 of 5
66794	methylglyoxal degradation	40	2 of 5
66794	lipid A biosynthesis	33.33	3 of 9
66794	octane oxidation	33.33	1 of 3
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	flavin biosynthesis	33.33	5 of 15
66794	sulfoquinovose degradation	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
66794	molybdenum cofactor biosynthesis	33.33	3 of 9
66794	cyanate degradation	33.33	1 of 3
66794	degradation of sugar acids	32	8 of 25
66794	urea cycle	30.77	4 of 13
66794	glycine metabolism	30	3 of 10
66794	propionate fermentation	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	CMP-KDO biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	cyclohexanol degradation	25	1 of 4
66794	sulfate reduction	23.08	3 of 13
66794	nitrate assimilation	22.22	2 of 9
66794	allantoin degradation	22.22	2 of 9

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
117003	-	-	+	-	-	+	-	-	-	-	+	-	+	+	-	+	+	+	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
8482	-	-	-	+	-	+	-	-	-	-	+	+	+	+	-	-	-	-	+	+	-	+	+	+	+	+	+	+	+	+	+	+	-	-	-	+	-	+	-	-	+	-	-	-	+	-	-	-	-	-
8482	-	-	-	-	-	+	-	-	-	-	+	+	+	-	-	-	-	-	+	+	-	+	+	+	+	+	+	+	+	+	+	+	-	-	-	+	-	+	-	-	+	-	-	-	+	-	-	-	-	-
8482	-	-	-	+	-	+	-	-	-	-	+	+	+	+	-	-	-	-	+	+	-	+	+	+	+	+	+	+	+	+	+	+	-	-	-	+	+/-	+	+/-	+	+	-	-	-	+	-	-	-	-	-
8482	-	-	-	+	-	+	-	-	-	-	+	+	+	+	-	-	-	-	+	+	-	+	+	+	+	+	+	+	+	+	+	+	-	-	-	+	+	+	+/-	+	+	-	-	-	+	-	-	-	-	-
8482	-	-	-	+	-	+	-	-	-	-	+	+	+	+	-	-	-	-	+	+	-	+	+	+	+	+	+	+	+	+	+	+	-	-	-	+	+	+	+	+	+	-	-	-	+	-	-	-	-	-
8482	-	-	-	-	-	+	-	-	-	-	+	+	+	+/-	-	-	-	-	+	+	-	+	+	-	-	+	+	+	+	+	+	+	-	-	-	+	-	+	-	-	+	-	-	-	+/-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	#Child
#Host Body-Site	#Gastrointestinal tract	-

Isolation

@ref	Sample type
8482	intestine of infant
67770	Intestine of infant
117003	Human, Infant, intestine

Taxonmaps

69479

Global distribution of 16S sequence LC071793 (>99% sequence identity) for Bifidobacterium breve subclade from Microbeatlas

Aquatic Samples	3177
Soil Samples	1133
Animal Samples	142996
Plant Samples	360
Total Samples	147666

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
8482	yes, in single cases	1	Risk group (German classification) According to TRBA 466
117003		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	49569_E01 assembly for Bifidobacterium breve NCTC11815	complete	GCA_900637145	1685.200	8116821608	1685	99.32
66792	ASM102517v1 assembly for Bifidobacterium breve DSM 20213 = JCM 1192	complete	GCA_001025175	518634.20	2859463870	518634	99.16
67770	DSM-20213 assembly for Bifidobacterium breve DSM 20213 = JCM 1192	contig	GCA_000771305	518634.19	2667527587	518634	73.53
67770	ASM15801v1 assembly for Bifidobacterium breve DSM 20213 = JCM 1192	scaffold	GCA_000158015	518634.7	643886102	518634	55.9
67770	ASM131129v1 assembly for Bifidobacterium breve DSM 20213 = JCM 1192	contig	GCA_001311295	518634.21	2728369679	518634

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Bifidobacterium breve gene for 16S rRNA, partial sequence, strain: ATCC 15700	AB006658	1520	518634
20218	Bifidobacterium breve partial 16S rRNA gene, type strain ATCC 15700T	AM411121	179	518634
20218	Bifidobacterium breve 16S ribosomal RNA	M58731	1536	1685
20218	Bifodibacterium breve (ATCC 15700) 16S ribosomal RNA gene, partial	M84776	642	1685
20218	Bifidobacterium breve strain DSM 20213 16S ribosomal RNA gene, partial sequence	HQ012023	939	518634
20218	Bifidobacterium breve gene for 16S rRNA, partial sequence, strain: JCM 1192	AB116288	479	518634
20218	Bifidobacterium breve gene for 16S rRNA, partial sequence, strain: JCM 1192	AB507084	672	518634
20218	Bifidobacterium breve strain KCTC 3220 16S ribosomal RNA gene, partial sequence	GU361815	1483	1685
67770	Bifidobacterium breve gene for 16S ribosomal RNA, partial sequence, strain: JCM 1192	LC071793	1418	518634
124043	Bifidobacterium breve DSM 20213 = JCM 1192 16S ribosomal RNA gene, partial sequence.	PQ789987	1520	518634

GC content

@ref	GC-content (mol%)	Method
8482	58.4
67770	58.4	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bifidobacterium breve DSM 20213 = JCM 1192
NCBI: GCA_001025175

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	90.90	no
125439	motility	BacteriaNetⓘ	no	54.20	no
125439	gram_stain	BacteriaNetⓘ	positive	75.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	75.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bifidobacterium breve DSM 20213 = JCM 1192 JCM 1192
NCBI: GCA_001025175.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	86.51	no
125438	anaerobic	anaerobicⓘ	yes	84.18	yes
125438	aerobic	aerobicⓘ	no	91.78	yes
125438	spore-forming	spore-formingⓘ	no	89.51	no
125438	thermophilic	thermophileⓘ	no	93.47	yes
125438	flagellated	motile2+ⓘ	no	91.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	The level of I-FABP and IgA/IgG to beta-lactoglobulin in mothers at risk for gestational diabetes and in their children: association with antibodies to Bifidobacterium adolescentis and Bifidobacterium breve.	Vorobjova T, Tagoma A, Peterson C, Talja I, Barenson A, Alnek K, Janson H, Metskula K, Kirss A, Sepp E, Roop T, Koljalg S, Uibo R.	Front Immunol	10.3389/fimmu.2025.1613002	2025
	Lactobacilli and Bifidobacteria: A Parapostbiotic Approach to Study and Explain Their Mutual Bioactive Influence.	Altieri C, Filippone A, Bevilacqua A, Corbo MR, Sinigaglia M.	Foods	10.3390/foods13182966	2024
	FBS-based cryoprotective compositions for effective cryopreservation of gut microbiota and key intestinal microorganisms.	Zalomova LV, Fesenko EE.	BMC Res Notes	10.1186/s13104-024-06836-2	2024
Phylogeny	Genomic Characterization and Safety Assessment of Bifidobacterium breve BS2-PB3 as Functional Food.	Marbun KT, Sugata M, Purnomo JS, Dikson, Mudana SO, Jan TT, Jo J.	J Microbiol Biotechnol	10.4014/jmb.2311.11031	2024
Genetics	The estrobolome: Estrogen-metabolizing pathways of the gut microbiome and their relation to breast cancer.	Larnder AH, Manges AR, Murphy RA.	Int J Cancer	10.1002/ijc.35427	2025
Metabolism	Stimulatory effects of novel glucosylated lactose derivatives GL34 on growth of selected gut bacteria.	Pham HTT, Boger MCL, Dijkhuizen L, Dijkhuizen L, van Leeuwen SS.	Appl Microbiol Biotechnol	10.1007/s00253-018-9473-8	2019
	Dietary fiber content in clinical ketogenic diets modifies the gut microbiome and seizure resistance in mice.	Ozcan E, Yu KB, Dinh L, Lum GR, Lau K, Hsu J, Arino M, Paramo J, Lopez-Romero A, Hsiao EY.	Nat Commun	10.1038/s41467-025-56091-7	2025
	Primary succession of Bifidobacteria drives pathogen resistance in neonatal microbiota assembly.	Shao Y, Garcia-Maurino C, Clare S, Dawson NJR, Mu A, Adoum A, Harcourt K, Liu J, Browne HP, Stares MD, Rodger A, Brocklehurst P, Field N, Lawley TD.	Nat Microbiol	10.1038/s41564-024-01804-9	2024
	Bifidobacterium beta-Glucosidase Activity and Fermentation of Dietary Plant Glucosides Is Species and Strain Specific.	Modrackova N, Vlkova E, Tejnecky V, Schwab C, Neuzil-Bunesova V.	Microorganisms	10.3390/microorganisms8060839	2020
	Cross-feeding of bifidobacteria promotes intestinal homeostasis: a lifelong perspective on the host health.	Xiao M, Zhang C, Duan H, Narbad A, Zhao J, Chen W, Zhai Q, Yu L, Tian F.	NPJ Biofilms Microbiomes	10.1038/s41522-024-00524-6	2024
	A Combined Proteomics, Metabolomics and In Vivo Analysis Approach for the Characterization of Probiotics in Large-Scale Production.	Bianchi L, Laghi L, Correani V, Schifano E, Landi C, Uccelletti D, Mattei B.	Biomolecules	10.3390/biom10010157	2020
	Trophic Interactions of Infant Bifidobacteria and Eubacterium hallii during L-Fucose and Fucosyllactose Degradation.	Schwab C, Ruscheweyh HJ, Bunesova V, Pham VT, Beerenwinkel N, Lacroix C.	Front Microbiol	10.3389/fmicb.2017.00095	2017
	In Vitro Production of Galactooligosaccharides by a Novel beta-Galactosidase of Lactobacillus bulgaricus.	Arsov A, Ivanov I, Tsigoriyna L, Petrov K, Petrova P.	Int J Mol Sci	10.3390/ijms232214308	2022
Genetics	Genome mining of Streptomyces scabrisporus NF3 reveals symbiotic features including genes related to plant interactions.	Ceapa CD, Vazquez-Hernandez M, Rodriguez-Luna SD, Cruz Vazquez AP, Jimenez Suarez V, Rodriguez-Sanoja R, Alvarez-Buylla ER, Sanchez S.	PLoS One	10.1371/journal.pone.0192618	2018
Genetics	Targeted High-Resolution Taxonomic Identification of Bifidobacterium longum subsp. infantis Using Human Milk Oligosaccharide Metabolizing Genes.	Tso L, Bonham KS, Fishbein A, Rowland S, Klepac-Ceraj V.	Nutrients	10.3390/nu13082833	2021
Genetics	Comparative genomics of the Bifidobacterium breve taxon.	Bottacini F, O'Connell Motherway M, Kuczynski J, O'Connell KJ, Serafini F, Duranti S, Milani C, Turroni F, Lugli GA, Zomer A, Zhurina D, Riedel C, Ventura M, van Sinderen D.	BMC Genomics	10.1186/1471-2164-15-170	2014
Metabolism	Gut bacteria-derived 5-hydroxyindole is a potent stimulant of intestinal motility via its action on L-type calcium channels.	Waclawikova B, Bullock A, Schwalbe M, Aranzamendi C, Nelemans SA, van Dijk G, El Aidy S.	PLoS Biol	10.1371/journal.pbio.3001070	2021
Metabolism	Microbial short-chain fatty acids modulate CD8⁺ T cell responses and improve adoptive immunotherapy for cancer.	Luu M, Riester Z, Baldrich A, Reichardt N, Yuille S, Busetti A, Klein M, Wempe A, Leister H, Raifer H, Picard F, Muhammad K, Ohl K, Romero R, Fischer F, Bauer CA, Huber M, Gress TM, Lauth M, Danhof S, Bopp T, Nerreter T, Mulder IE, Steinhoff U, Hudecek M, Visekruna A.	Nat Commun	10.1038/s41467-021-24331-1	2021
	Bifidobacteria support optimal infant vaccine responses.	Ryan FJ, Clarke M, Lynn MA, Benson SC, McAlister S, Giles LC, Choo JM, Rossouw C, Ng YY, Semchenko EA, Richard A, Leong LEX, Taylor SL, Blake SJ, Mugabushaka JI, Walker M, Wesselingh SL, Licciardi PV, Seib KL, Tumes DJ, Richmond P, Rogers GB, Marshall HS, Lynn DJ.	Nature	10.1038/s41586-025-08796-4	2025
	Three-Month Feeding Integration With Bifidobacterium Strains Prevents Gastrointestinal Symptoms in Healthy Newborns.	Aloisio I, Prodam F, Giglione E, Bozzi Cionci N, Solito A, Bellone S, Baffoni L, Mogna L, Pane M, Bona G, Di Gioia D.	Front Nutr	10.3389/fnut.2018.00039	2018
Metabolism	Microbiota Supplementation with Bifidobacterium and Lactobacillus Modifies the Preterm Infant Gut Microbiota and Metabolome: An Observational Study.	Alcon-Giner C, Dalby MJ, Caim S, Ketskemety J, Shaw A, Sim K, Lawson MAE, Kiu R, Leclaire C, Chalklen L, Kujawska M, Mitra S, Fardus-Reid F, Belteki G, McColl K, Swann JR, Kroll JS, Clarke P, Hall LJ.	Cell Rep Med	10.1016/j.xcrm.2020.100077	2020
	Quantitative Detection of Bifidobacterium longum Strains in Feces Using Strain-Specific Primers.	Xiao Y, Wang C, Zhao J, Zhang H, Chen W, Zhai Q.	Microorganisms	10.3390/microorganisms9061159	2021
	Administration of Bovine Milk Oligosaccharide to Weaning Gnotobiotic Mice Inoculated with a Simplified Infant Type Microbiota.	Jakobsen LMA, Sundekilde UK, Andersen HJ, Kot W, Mejia JLC, Nielsen DS, Hansen AK, Bertram HC.	Microorganisms	10.3390/microorganisms9051003	2021
Enzymology	Activation of LacZ gene in Escherichia coli DH5alpha via alpha-complementation mechanism for beta-galactosidase production and its biochemical characterizations.	Hamed AA, Khedr M, Abdelraof M.	J Genet Eng Biotechnol	10.1186/s43141-020-00096-w	2020
Enzymology	Fusobacterium nucleatum and Bacteroides fragilis detection in colorectal tumours: Optimal target site and correlation with total bacterial load.	Rye MS, Garrett KL, Holt RA, Platell CF, McCoy MJ.	PLoS One	10.1371/journal.pone.0262416	2022
Genetics	Transcriptional Regulation of Carbohydrate Utilization Pathways in the Bifidobacterium Genus.	Khoroshkin MS, Leyn SA, Van Sinderen D, Rodionov DA.	Front Microbiol	10.3389/fmicb.2016.00120	2016
Metabolism	Identification and characterization of an oleate hydratase-encoding gene from Bifidobacterium breve.	O'Connell KJ, Motherway MO, Hennessey AA, Brodhun F, Ross RP, Feussner I, Stanton C, Fitzgerald GF, van Sinderen D.	Bioengineered	10.4161/bioe.24159	2013
	Comparative Genomics Revealed Genetic Diversity and Species/Strain-Level Differences in Carbohydrate Metabolism of Three Probiotic Bifidobacterial Species.	Odamaki T, Horigome A, Sugahara H, Hashikura N, Minami J, Xiao JZ, Abe F.	Int J Genomics	10.1155/2015/567809	2015
	Early Gut Microbiota Perturbations Following Intrapartum Antibiotic Prophylaxis to Prevent Group B Streptococcal Disease.	Mazzola G, Murphy K, Ross RP, Di Gioia D, Biavati B, Corvaglia LT, Faldella G, Stanton C.	PLoS One	10.1371/journal.pone.0157527	2016
Biotechnology	Culture Dependent and Independent Analysis of Potential Probiotic Bacterial Genera and Species Present in the Phyllosphere of Raw Eaten Produce.	Patz S, Witzel K, Scherwinski AC, Ruppel S.	Int J Mol Sci	10.3390/ijms20153661	2019
	Pili-like proteins of Akkermansia muciniphila modulate host immune responses and gut barrier function.	Ottman N, Reunanen J, Meijerink M, Pietila TE, Kainulainen V, Klievink J, Huuskonen L, Aalvink S, Skurnik M, Boeren S, Satokari R, Mercenier A, Palva A, Smidt H, de Vos WM, Belzer C.	PLoS One	10.1371/journal.pone.0173004	2017
	Identification of iron-regulated genes of Bifidobacterium breve UCC2003 as a basis for controlled gene expression.	Cronin M, Zomer A, Fitzgerald GF, van Sinderen D.	Bioeng Bugs	10.4161/bbug.18985	2012
Metabolism	Strain dropouts reveal interactions that govern the metabolic output of the gut microbiome.	Wang M, Osborn LJ, Jain S, Meng X, Weakley A, Yan J, Massey WJ, Varadharajan V, Horak A, Banerjee R, Allende DS, Chan ER, Hajjar AM, Wang Z, Dimas A, Zhao A, Nagashima K, Cheng AG, Higginbottom S, Hazen SL, Brown JM, Fischbach MA.	Cell	10.1016/j.cell.2023.05.037	2023
	The application of genetics methods to differentiation of three Lactobacillus species of human origin.	Gosiewski T, Chmielarczyk A, Strus M, Brzychczy-Wloch M, Heczko PB.	Ann Microbiol	10.1007/s13213-011-0395-2	2012
	Novel Insights into the Molecular Mechanisms Underlying Robustness and Stability in Probiotic Bifidobacteria.	Schopping M, Goel A, Jensen K, Faria RA, Franzen CJ, Zeidan AA.	Appl Environ Microbiol	10.1128/aem.00082-23	2023
Metabolism	Fucosyllactose and L-fucose utilization of infant Bifidobacterium longum and Bifidobacterium kashiwanohense.	Bunesova V, Lacroix C, Schwab C.	BMC Microbiol	10.1186/s12866-016-0867-4	2016
Genetics	Comparative Genomic Analysis of the Human Gut Microbiome Reveals a Broad Distribution of Metabolic Pathways for the Degradation of Host-Synthetized Mucin Glycans and Utilization of Mucin-Derived Monosaccharides.	Ravcheev DA, Thiele I.	Front Genet	10.3389/fgene.2017.00111	2017
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Metabolism	Nursing our microbiota: molecular linkages between bifidobacteria and milk oligosaccharides.	Sela DA, Mills DA.	Trends Microbiol	10.1016/j.tim.2010.03.008	2010
Pathogenicity	Inhibitory activity spectrum of reuterin produced by Lactobacillus reuteri against intestinal bacteria.	Cleusix V, Lacroix C, Vollenweider S, Duboux M, Le Blay G.	BMC Microbiol	10.1186/1471-2180-7-101	2007
Metabolism	Bifidobacterium species associated with breastfeeding produce aromatic lactic acids in the infant gut.	Laursen MF, Sakanaka M, von Burg N, Morbe U, Andersen D, Moll JM, Pekmez CT, Rivollier A, Michaelsen KF, Molgaard C, Lind MV, Dragsted LO, Katayama T, Frandsen HL, Vinggaard AM, Bahl MI, Brix S, Agace W, Licht TR, Roager HM.	Nat Microbiol	10.1038/s41564-021-00970-4	2021
	Bifidobacterium population analysis in the infant gut by direct mapping of genomic hybridization patterns: potential for monitoring temporal development and effects of dietary regimens.	Boesten R, Schuren F, Ben Amor K, Haarman M, Knol J, de Vos WM.	Microb Biotechnol	10.1111/j.1751-7915.2010.00216.x	2011
Metabolism	Oligosaccharide binding proteins from Bifidobacterium longum subsp. infantis reveal a preference for host glycans.	Garrido D, Kim JH, German JB, Raybould HE, Mills DA.	PLoS One	10.1371/journal.pone.0017315	2011
	Design, construction, and in vivo augmentation of a complex gut microbiome.	Cheng AG, Ho PY, Aranda-Diaz A, Jain S, Yu FB, Meng X, Wang M, Iakiviak M, Nagashima K, Zhao A, Murugkar P, Patil A, Atabakhsh K, Weakley A, Yan J, Brumbaugh AR, Higginbottom S, Dimas A, Shiver AL, Deutschbauer A, Neff N, Sonnenburg JL, Huang KC, Fischbach MA.	Cell	10.1016/j.cell.2022.08.003	2022
	Phylogenetic identification of bacterial MazF toxin protein motifs among probiotic strains and foodborne pathogens and potential implications of engineered probiotic intervention in food.	Yan X, Gurtler JB, Fratamico PM, Hu J, Juneja VK.	Cell Biosci	10.1186/2045-3701-2-39	2012
Metabolism	The influence of milk oligosaccharides on microbiota of infants: opportunities for formulas.	Chichlowski M, German JB, Lebrilla CB, Mills DA.	Annu Rev Food Sci Technol	10.1146/annurev-food-022510-133743	2011
Genetics	Genomic insights into bifidobacteria.	Lee JH, O'Sullivan DJ.	Microbiol Mol Biol Rev	10.1128/mmbr.00004-10	2010
Pathogenicity	Identification and Biological Characterization of a Novel NRF2 Activator Molecule Released From the Membranes of Heat-Treated Bifidobacterium breve NCC 2950.	Foata F, Duboux S, Herzig S, Sizzano F, Thevenet J, Guy P, Rezzi S, Metairon S, Bourqui B, Montoliu I, Mercenier A, Bosco N.	Mol Nutr Food Res	10.1002/mnfr.202400770	2025
Enzymology	In situ identifying sennoside A-reducing bacteria guilds in human gut microbiota via enzymatic activity visualization.	Zhai C, Liu X, Liu Z, Ma H, Li H, Gong Y, Li X, Wang Y, Zhang N, Zhang H, Luo G, Wang Y, Gao X.	Gut Microbes	10.1080/19490976.2025.2560598	2025
	Application of probiotic bacteria in ginsenoside bioconversion and enhancing its health-promoting benefits: a review.	Vasquez R, Song JH, Park YS, Paik HD, Kang DK.	Food Sci Biotechnol	10.1007/s10068-024-01734-6	2025
	Cholecystectomy-related gut microbiota dysbiosis exacerbates colorectal tumorigenesis.	Tang B, Li S, Li X, He J, Zhou A, Wu L, Xiao X, Wang S, Jiang H, Jian J, Hou Z, Ge Y, Lei Y, Zhou J, Tu D, Lu C, Yang M, Yang S.	Nat Commun	10.1038/s41467-025-62956-8	2025
	Investigating the therapeutic potential of Bifidobacterium breve and Lactobacillus rhamnosus postbiotics through apoptosis induction in colorectal HT-29 cancer cells.	Erfanian N, Safarpour H, Tavakoli T, Mahdiabadi MA, Nasseri S, Namaei MH.	Iran J Microbiol	10.18502/ijm.v16i1.14873	2024
	Exploring the Potential Probiotic Properties of Bifidobacterium breve DSM 32583-A Novel Strain Isolated from Human Milk.	Kujawska M, Neuhaus K, Huptas C, Jimenez E, Arboleya S, Schaubeck M, Hall LJ.	Probiotics Antimicrob Proteins	10.1007/s12602-024-10346-9	2025
	Assessment of the bifidogenic and antibacterial activities of xylooligosaccharide.	Sun Z, Yue Z, Liu E, Li X, Li C.	Front Nutr	10.3389/fnut.2022.858949	2022
	Assessing probiotic viability in mixed species yogurt using a novel propidium monoazide (PMAxx)-quantitative PCR method.	Marole TA, Sibanda T, Buys EM.	Front Microbiol	10.3389/fmicb.2024.1325268	2024
	Microbial Conjugated Linolenic Acid-Enriched Fermented Milk Using Lipase-Hydrolyzed Flaxseed Oil: Biochemical, Organoleptic and Storage Traits.	Fontes AL, Pimentel LL, Monteiro MJP, Domingues MR, Rodriguez-Alcala LM, Gomes AM.	Foods	10.3390/foods13010021	2023
	Occurrence of Listeria spp. in Soft Cheese and Ice Cream: Effect of Probiotic Bifidobacterium spp. on Survival of Listeria monocytogenes in Soft Cheese.	Ewida RM, Hasan WS, Elfaruk MS, Alayouni RR, Hammam ARA, Kamel DG.	Foods	10.3390/foods11213443	2022
	Advancements in Oral Delivery Systems for Probiotics Based on Polysaccharides.	Wang ZD, Zhang W, Liang TX.	Polymers (Basel)	10.3390/polym17020144	2025
	Synergy between "Probiotic" Carbon Quantum Dots and Ciprofloxacin in Eradicating Infectious Biofilms and Their Biosafety in Mice.	Wu Y, Yang G, van der Mei HC, Shi L, Busscher HJ, Ren Y.	Pharmaceutics	10.3390/pharmaceutics13111809	2021
Metabolism	Esterases From Bifidobacteria Exhibit the Conversion of Albiflorin in Gut Microbiota.	Peng R, Han P, Fu J, Zhang ZW, Ma SR, Pan LB, Xia YY, Yu H, Xu H, Liu CX, Wang Y.	Front Microbiol	10.3389/fmicb.2022.880118	2022
	Isolation and purification of Tartary buckwheat polysaccharides and their effect on gut microbiota.	Xiang Y, Cao YN, Yang SH, Ren YH, Zhao G, Li Q, Li H, Peng LX.	Food Sci Nutr	10.1002/fsn3.3072	2023
	Bifidobacterium breve PRL2020: Antibiotic-Resistant Profile and Genomic Detection of Antibiotic Resistance Determinants.	Di Pierro F, Campedelli I, De Marta P, Fracchetti F, Del Casale A, Cavecchia I, Matera M, Cazzaniga M, Bertuccioli A, Guasti L, Zerbinati N.	Microorganisms	10.3390/microorganisms11071649	2023
	Growth and survival of Bifidobacterium breve and Bifidobacterium longum in various sugar systems with fructooligosaccharide supplementation.	Parhi P, Song KP, Choo WS.	J Food Sci Technol	10.1007/s13197-022-05361-z	2022
	Featured Prebiotic Agent: The Roles and Mechanisms of Direct and Indirect Prebiotic Activities of Lactoferrin and Its Application in Disease Control.	Liu ZS, Chen PW.	Nutrients	10.3390/nu15122759	2023
	Compound K Production: Achievements and Perspectives.	Chu LL, Hanh NTY, Quyen ML, Nguyen QH, Lien TTP, Do KV.	Life (Basel)	10.3390/life13071565	2023
	Two-Stage Interpretation of Changes in TEER of Intestinal Epithelial Layers Protected by Adhering Bifidobacteria During E. coli Challenges.	Yuan L, van der Mei HC, Busscher HJ, Peterson BW.	Front Microbiol	10.3389/fmicb.2020.599555	2020
Enzymology	In vivo evaluation of Clostridioides difficile enoyl-ACP reductase II (FabK) inhibition by phenylimidazole unveils a promising narrow-spectrum antimicrobial strategy.	Dureja C, Rutherford JT, Pavel FB, Norseeda K, Prah I, Sun D, Hevener KE, Hurdle JG.	Antimicrob Agents Chemother	10.1128/aac.01222-23	2024
Metabolism	Current Trends and Technological Advancements in the Use of Oxalate-Degrading Bacteria as Starters in Fermented Foods-A Review.	Al-Kabe SH, Niamah AK.	Life (Basel)	10.3390/life14101338	2024
Enzymology	Human milk and mucosa-associated disaccharides impact on cultured infant fecal microbiota.	Rubio-Del-Campo A, Alcantara C, Collado MC, Rodriguez-Diaz J, Yebra MJ.	Sci Rep	10.1038/s41598-020-68718-4	2020
	Synthetic microbial consortia for the treatment of Clostridioides difficile infection in mice model.	Liu J, Zhu W, Lessing DJ, Chu W.	Microb Biotechnol	10.1111/1751-7915.14333	2023
	Lactobacillus acidophilus Mitigates Osteoarthritis-Associated Pain, Cartilage Disintegration and Gut Microbiota Dysbiosis in an Experimental Murine OA Model.	O-Sullivan I, Natarajan Anbazhagan A, Singh G, Ma K, Green SJ, Singhal M, Wang J, Kumar A, Dudeja PK, Unterman TG, Votta-Velis G, Bruce B, van Wijnen AJ, Im HJ.	Biomedicines	10.3390/biomedicines10061298	2022
	The Synergistic Effect of Quince Fruit and Probiotics (Lactobacillus and Bifidobacterium) on Reducing Oxidative Stress and Inflammation at the Intestinal Level and Improving Athletic Performance during Endurance Exercise.	Herrera-Rocha KM, Manjarrez-Juanes MM, Larrosa M, Barrios-Payan JA, Rocha-Guzman NE, Macias-Salas A, Gallegos-Infante JA, Alvarez SA, Gonzalez-Laredo RF, Moreno-Jimenez MR.	Nutrients	10.3390/nu15224764	2023
	Antimicrobial peptide temporin derivatives inhibit biofilm formation and virulence factor expression of Streptococcus mutans.	Jiang S, Zha Y, Zhao T, Jin X, Zhu R, Wei S, Wang R, Song Y, Li L, Lyu J, Hu W, Zhang D, Wang M, Zhang Y.	Front Microbiol	10.3389/fmicb.2023.1267389	2023
	The strategic role of biotics in dental caries prevention: A scoping review.	Banakar M, Fernandes GVO, Etemad-Moghadam S, Frankenberger R, Pourhajibagher M, Mehran M, Yazdi MH, Haghgoo R, Alaeddini M.	Food Sci Nutr	10.1002/fsn3.4473	2024
	Repurposing 1,4-Dihydropyridine Scaffold: 4-Imidazo[2,1-b]thiazole-Derivatives from Calcium Entry Blockers to a New Approach for Gut Dysfunctional Motility.	Camarda L, Corazza I, Locatelli A, Leoni A, Frosini M, Budriesi R, Carosati E, Santini A, Montagnani M, Marzetti C, Mattioli LB.	Pharmaceuticals (Basel)	10.3390/ph18101476	2025
Metabolism	Lactoferrin Metal Saturation-Which Form Is the Best for Neonatal Nutrition?	Majka G, Pilarczyk-Zurek M, Baranowska A, Skowron B, Strus M.	Nutrients	10.3390/nu12113340	2020
	Recent Development of Probiotic Bifidobacteria for Treating Human Diseases.	Chen J, Chen X, Ho CL.	Front Bioeng Biotechnol	10.3389/fbioe.2021.770248	2021
	Abundance of Bifidobacterium species in the infant gut microbiota and associations with maternal-infant characteristics in Dhaka, Bangladesh.	Freitas AC, Li G, Shawon J, Qamar H, Pell LG, Kabir M, Oduaran OH, Puebla-Barragan S, Bassani DG, O'Callaghan KM, Onuora JC, Loutet MG, Heasley C, Starke CWE, Mahmud AA, Hamer DH, Pullenayegum E, Hossain MI, Siddiqui MM, Islam MS, Sherman PM, Shah PS, Gaffar SMA, Sultana S, Morris SK, Ahmed T, Haque R, Sarker SA, Roth DE.	mSphere	10.1128/msphere.00314-25	2025
	Extraction, Characterisation and Evaluation of Antioxidant and Probiotic Growth Potential of Water-Soluble Polysaccharides from Ulva rigida Macroalgae.	Phomkaivon N, Pongponpai P, Kosawatpat P, Thongdang B, Pan-Utai W.	Foods	10.3390/foods13111630	2024
	In Vitro Selective Combinatory Effect of Ciprofloxacin with Nitroxoline, Sanguinarine, and Zinc Pyrithione against Diarrhea-Causing and Gut Beneficial Bacteria.	Osei-Owusu H, Kudera T, Strakova M, Rondevaldova J, Skrivanova E, Novy P, Kokoska L.	Microbiol Spectr	10.1128/spectrum.01063-22	2022
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	Inheritance of physico-chemical properties and ROS generation by carbon quantum dots derived from pyrolytically carbonized bacterial sources.	Wu Y, Wei H, van der Mei HC, de Vries J, Busscher HJ, Ren Y.	Mater Today Bio	10.1016/j.mtbio.2021.100151	2021
Pathogenicity	Thymus vulgaris L. Essential Oil Solid Formulation: Chemical Profile and Spasmolytic and Antimicrobial Effects.	Micucci M, Protti M, Aldini R, Frosini M, Corazza I, Marzetti C, Mattioli LB, Tocci G, Chiarini A, Mercolini L, Budriesi R.	Biomolecules	10.3390/biom10060860	2020
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Metabolism	Variation in consumption of human milk oligosaccharides by infant gut-associated strains of Bifidobacterium breve.	Ruiz-Moyano S, Totten SM, Garrido DA, Smilowitz JT, German JB, Lebrilla CB, Mills DA.	Appl Environ Microbiol	10.1128/aem.01843-13	2013
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Phylogeny	Identification of species belonging to the Bifidobacterium genus by PCR-RFLP analysis of a hsp60 gene fragment.	Baffoni L, Stenico V, Strahsburger E, Gaggia F, Di Gioia D, Modesto M, Mattarelli P, Biavati B.	BMC Microbiol	10.1186/1471-2180-13-149	2013
	Highly Specialized Carbohydrate Metabolism Capability in Bifidobacterium Strains Associated with Intestinal Barrier Maturation in Early Preterm Infants.	Ma B, Sundararajan S, Nadimpalli G, France M, McComb E, Rutt L, Lemme-Dumit JM, Janofsky E, Roskes LS, Gajer P, Fu L, Yang H, Humphrys M, Tallon LJ, Sadzewicz L, Pasetti MF, Ravel J, Viscardi RM.	mBio	10.1128/mbio.01299-22	2022
	Prebiotic potential of Agave angustifolia Haw fructans with different degrees of polymerization.	Velazquez-Martinez JR, Gonzalez-Cervantes RM, Hernandez-Gallegos MA, Mendiola RC, Aparicio AR, Ocampo ML.	Molecules	10.3390/molecules190812660	2014
	In Vitro Selective Antibacterial and Antiproliferative Effects of Ethanolic Extracts from Cambodian and Philippine Plants Used in Folk Medicine for Diarrhea Treatment.	Kudera T, Fiserova B, Korytakova M, Doskocil I, Salmonova H, Tulin EE, Nguon S, Bande MM, Kokoska L.	Front Pharmacol	10.3389/fphar.2021.746808	2021
Phylogeny	Microbial Communities in the Extraradicular and Intraradicular Infections Associated With Persistent Apical Periodontitis.	Sun X, Yang Z, Nie Y, Hou B.	Front Cell Infect Microbiol	10.3389/fcimb.2021.798367	2021
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	Antioxidant and Anti-Inflammatory Properties of Recombinant Bifidobacterium bifidum BGN4 Expressing Antioxidant Enzymes.	Lin Z, Ku S, Lim T, Park SY, Park MS, Ji GE, O'Brien K, Hwang KT.	Microorganisms	10.3390/microorganisms9030595	2021
Pathogenicity	The botanical origin and antioxidant, anti-BACE1 and antiproliferative properties of bee pollen from different regions of South Korea.	Zou Y, Hu J, Huang W, Zhu L, Shao M, Dordoe C, Ahn YJ, Wang D, Zhao Y, Xiong Y, Wang X.	BMC Complement Med Ther	10.1186/s12906-020-03023-1	2020
	Effect of trimmed asparagus by-products supplementation in broiler diets on performance, nutrients digestibility, gut ecology, and functional meat production.	Nopparatmaitree M, Nava M, Chumsangchotisakun V, Saenphoom P, Chotnipat S, Kitpipit W.	Vet World	10.14202/vetworld.2022.147-161	2022
	Targeting Nrf2 with Probiotics and Postbiotics in the Treatment of Periodontitis.	Karaca B, Yilmaz M, Gursoy UK.	Biomolecules	10.3390/biom12050729	2022
	Effect of Bifidobacterium breve M-16V supplementation on fecal bifidobacteria in preterm neonates--a randomised double blind placebo controlled trial.	Patole S, Keil AD, Chang A, Nathan E, Doherty D, Simmer K, Esvaran M, Conway P.	PLoS One	10.1371/journal.pone.0089511	2014
Enzymology	Evaluation of a Novel Stool Antigen Rapid Test Kit for Detection of Helicobacter pylori Infection.	Kakiuchi T, Okuda M, Hashiguchi K, Imamura I, Nakayama A, Matsuo M.	J Clin Microbiol	10.1128/jcm.01825-18	2019
	Effects of a new combination of nutraceuticals on postmenopausal symptoms and metabolic profile: a crossover, randomized, double-blind trial.	Trimarco V, Rozza F, Izzo R, De Leo V, Cappelli V, Riccardi C, Di Carlo C.	Int J Womens Health	10.2147/ijwh.s115948	2016
	beta-Glucosidase and Its Application in Bioconversion of Ginsenosides in Panax ginseng.	Tran TNA, Son JS, Awais M, Ko JH, Yang DC, Jung SK.	Bioengineering (Basel)	10.3390/bioengineering10040484	2023
Enzymology	Gut Microbiota-Based Pharmacokinetics and the Antidepressant Mechanism of Paeoniflorin.	Yu JB, Zhao ZX, Peng R, Pan LB, Fu J, Ma SR, Han P, Cong L, Zhang ZW, Sun LX, Jiang JD, Wang Y.	Front Pharmacol	10.3389/fphar.2019.00268	2019
	Quantification of Intestinal Lactobacillus Species in Children with Functional Constipation by Quantitative Real-Time PCR.	Jomehzadeh N, Javaherizadeh H, Amin M, Rashno M, Teimoori A.	Clin Exp Gastroenterol	10.2147/ceg.s250755	2020
Metabolism	Relevance of Bifidobacterium animalis subsp. lactis plasminogen binding activity in the human gastrointestinal microenvironment.	Candela M, Turroni S, Centanni M, Fiori J, Bergmann S, Hammerschmidt S, Brigidi P.	Appl Environ Microbiol	10.1128/aem.00413-11	2011
	In Vitro Selective Growth-Inhibitory Activities of Phytochemicals, Synthetic Phytochemical Analogs, and Antibiotics against Diarrheagenic/Probiotic Bacteria and Cancer/Normal Intestinal Cells.	Kudera T, Doskocil I, Salmonova H, Petrtyl M, Skrivanova E, Kokoska L.	Pharmaceuticals (Basel)	10.3390/ph13090233	2020
Pathogenicity	In Vitro and In Vivo Activities of DS-2969b, a Novel GyrB Inhibitor, against Clostridium difficile.	Mathur T, Barman TK, Kumar M, Singh D, Kumar R, Khera MK, Yamada M, Inoue SI, Upadhyay DJ, Masuda N.	Antimicrob Agents Chemother	10.1128/aac.02157-17	2018
Metabolism	Glycoprofiling bifidobacterial consumption of galacto-oligosaccharides by mass spectrometry reveals strain-specific, preferential consumption of glycans.	Barboza M, Sela DA, Pirim C, Locascio RG, Freeman SL, German JB, Mills DA, Lebrilla CB.	Appl Environ Microbiol	10.1128/aem.00842-09	2009
Metabolism	Metabolism of sialic acid by Bifidobacterium breve UCC2003.	Egan M, O'Connell Motherway M, Ventura M, van Sinderen D.	Appl Environ Microbiol	10.1128/aem.01114-14	2014
	Green tea increases the survival yield of Bifidobacteria in simulated gastrointestinal environment and during refrigerated conditions.	Vodnar DC, Socaciu C.	Chem Cent J	10.1186/1752-153x-6-61	2012
	Protein-Linked Glycan Degradation in Infants Fed Human Milk.	Dallas DC, Sela D, Underwood MA, German JB, Lebrilla C.	J Glycomics Lipidomics	10.4172/2153-0637.s1-002	2012
Pathogenicity	Growth-Inhibiting and morphostructural effects of constituents identified in Asarum heterotropoides root on human intestinal bacteria.	Perumalsamy H, Jung MY, Hong SM, Ahn YJ.	BMC Complement Altern Med	10.1186/1472-6882-13-245	2013
Pathogenicity	Capping Agent-Dependent Toxicity and Antimicrobial Activity of Silver Nanoparticles: An In Vitro Study. Concerns about Potential Application in Dental Practice.	Niska K, Niska K, Knap N, Kedzia A, Jaskiewicz M, Kamysz W, Inkielewicz-Stepniak I.	Int J Med Sci	10.7150/ijms.16011	2016
Metabolism	Transforming berberine into its intestine-absorbable form by the gut microbiota.	Feng R, Shou JW, Zhao ZX, He CY, Ma C, Huang M, Fu J, Tan XS, Li XY, Wen BY, Chen X, Yang XY, Ren G, Lin Y, Chen Y, You XF, Wang Y, Jiang JD.	Sci Rep	10.1038/srep12155	2015
	Prebiotic Potential and Chemical Composition of Seven Culinary Spice Extracts.	Lu QY, Summanen PH, Lee RP, Huang J, Henning SM, Heber D, Finegold SM, Li Z.	J Food Sci	10.1111/1750-3841.13792	2017
Pathogenicity	In vitro activity of tomopenem (CS-023/RO4908463) against anaerobic bacteria.	Tanaka K, Mikamo H, Nakao K, Ichiishi T, Goto T, Yamagishi Y, Watanabe K.	Antimicrob Agents Chemother	10.1128/aac.00595-08	2009
	Effect of Dietary l-arabinose on the Intestinal Microbiota and Metabolism of Dietary Daidzein in Adult Mice.	Tamura M, Kurusu Y, Hori S.	Biosci Microbiota Food Health	10.12938/bmfh.31.59	2012
Pathogenicity	In vitro antimicrobial activity of razupenem (SMP-601, PTZ601) against anaerobic bacteria.	Tran CM, Tanaka K, Yamagishi Y, Goto T, Mikamo H, Watanabe K.	Antimicrob Agents Chemother	10.1128/aac.01038-10	2011
Phylogeny	Real-time PCR analysis of the intestinal microbiotas in peritoneal dialysis patients.	Wang IK, Lai HC, Yu CJ, Liang CC, Chang CT, Kuo HL, Yang YF, Lin CC, Lin HH, Liu YL, Chang YC, Wu YY, Chen CH, Li CY, Chuang FR, Huang CC, Lin CH, Lin HC.	Appl Environ Microbiol	10.1128/aem.05605-11	2012
Metabolism	A versatile and scalable strategy for glycoprofiling bifidobacterial consumption of human milk oligosaccharides.	Locascio RG, Ninonuevo MR, Kronewitter SR, Freeman SL, German JB, Lebrilla CB, Mills DA.	Microb Biotechnol	10.1111/j.1751-7915.2008.00072.x	2009
	Relationship between total phenolic contents and biological properties of propolis from 20 different regions in South Korea.	Wang X, Sankarapandian K, Cheng Y, Woo SO, Kwon HW, Perumalsamy H, Ahn YJ.	BMC Complement Altern Med	10.1186/s12906-016-1043-y	2016
Metabolism	Complementary Mechanisms for Degradation of Inulin-Type Fructans and Arabinoxylan Oligosaccharides among Bifidobacterial Strains Suggest Bacterial Cooperation.	Riviere A, Selak M, Geirnaert A, Van den Abbeele P, De Vuyst L.	Appl Environ Microbiol	10.1128/aem.02893-17	2018
Enzymology	Detection of Bifidobacterium animalis subsp. lactis (Bb12) in the intestine after feeding of sows and their piglets.	Solano-Aguilar G, Dawson H, Restrepo M, Andrews K, Vinyard B, Urban JF.	Appl Environ Microbiol	10.1128/aem.00309-08	2008
Metabolism	Gut-brain axis metabolic pathway regulates antidepressant efficacy of albiflorin.	Zhao ZX, Fu J, Ma SR, Peng R, Yu JB, Cong L, Pan LB, Zhang ZG, Tian H, Che CT, Wang Y, Jiang JD.	Theranostics	10.7150/thno.28068	2018
	Evaluation of Fermented Sausages Manufactured with Reduced-fat and Functional Starter Cultures on Physicochemical, Functional and Flavor Characteristics.	Kim YJ, Park SY, Lee HC, Yoo SS, Oh SJ, Kim HS, Chin KB.	Korean J Food Sci Anim Resour	10.5851/kosfa.2014.34.3.346	2014
Enzymology	pH gradient and distribution of streptococci, lactobacilli, prevotellae, and fusobacteria in carious dentine.	Kianoush N, Nguyen KA, Browne GV, Simonian M, Hunter N.	Clin Oral Investig	10.1007/s00784-013-1009-0	2014
	Characterization of fecal microbiota across seven Chinese ethnic groups by quantitative polymerase chain reaction.	Kwok LY, Zhang J, Guo Z, Gesudu Q, Zheng Y, Qiao J, Huo D, Zhang H.	PLoS One	10.1371/journal.pone.0093631	2014
Metabolism	Consumption of human milk glycoconjugates by infant-associated bifidobacteria: mechanisms and implications.	Garrido D, Dallas DC, Mills DA.	Microbiology (Reading)	10.1099/mic.0.064113-0	2013
Pathogenicity	In vitro antianaerobic activity of DX-619, a new des-fluoro(6) quinolone.	Tanaka K, Mikamo H, Nakao K, Watanabe K.	Antimicrob Agents Chemother	10.1128/aac.00639-06	2006
Enzymology	Species-specific oligonucleotide probes for five Bifidobacterium species detected in human intestinal microflora.	Yamamoto T, Morotomi M, Tanaka R.	Appl Environ Microbiol	10.1128/aem.58.12.4076-4079.1992	1992
Phylogeny	Use of PCR and sodium dodecyl sulfate-polyacrylamide gel electrophoresis techniques for differentiation of Prevotella intermedia sensu stricto and Prevotella nigrescens.	Premaraj T, Kato N, Fukui K, Kato H, Watanabe K.	J Clin Microbiol	10.1128/jcm.37.4.1057-1061.1999	1999
Metabolism	Diversity, ecology and intestinal function of bifidobacteria.	Bottacini F, Ventura M, van Sinderen D, O'Connell Motherway M.	Microb Cell Fact	10.1186/1475-2859-13-s1-s4	2014
Enzymology	Ruminococcin A, a new lantibiotic produced by a Ruminococcus gnavus strain isolated from human feces.	Dabard J, Bridonneau C, Phillipe C, Anglade P, Molle D, Nardi M, Ladire M, Girardin H, Marcille F, Gomez A, Fons M.	Appl Environ Microbiol	10.1128/aem.67.9.4111-4118.2001	2001
Enzymology	Selective medium for isolation and enumeration of Bifidobacterium spp.	Munoa FJ, Pares R.	Appl Environ Microbiol	10.1128/aem.54.7.1715-1718.1988	1988
Phylogeny	Bifidobacterium lactis DSM 10140: identification of the atp (atpBEFHAGDC) operon and analysis of its genetic structure, characteristics, and phylogeny.	Ventura M, Canchaya C, van Sinderen D, Fitzgerald GF, Zink R.	Appl Environ Microbiol	10.1128/aem.70.5.3110-3121.2004	2004
Enzymology	Molecular analysis of the composition of the bifidobacterial and lactobacillus microflora of humans.	McCartney AL, Wenzhi W, Tannock GW.	Appl Environ Microbiol	10.1128/aem.62.12.4608-4613.1996	1996
Metabolism	The ability of bifidobacteria to degrade arabinoxylan oligosaccharide constituents and derived oligosaccharides is strain dependent.	Riviere A, Moens F, Selak M, Maes D, Weckx S, De Vuyst L.	Appl Environ Microbiol	10.1128/aem.02853-13	2014
	Bifidobacterial lipoglycan as a new cause for false-positive platelia Aspergillus enzyme-linked immunosorbent assay reactivity.	Mennink-Kersten MA, Ruegebrink D, Klont RR, Warris A, Gavini F, Op den Camp HJ, Verweij PE.	J Clin Microbiol	10.1128/jcm.43.8.3925-3931.2005	2005
Enzymology	Structure of macroamphiphiles from several Bifidobacterium strains.	Iwasaki H, Araki Y, Ito E, Nagaoka M, Yokokura T.	J Bacteriol	10.1128/jb.172.2.845-852.1990	1990
Enzymology	Bifidobacterial diversity in human feces detected by genus-specific PCR and denaturing gradient gel electrophoresis.	Satokari RM, Vaughan EE, Akkermans AD, Saarela M, de Vos WM.	Appl Environ Microbiol	10.1128/aem.67.2.504-513.2001	2001
	Growth promotion of Bifidobacterium species by whey and casein fractions from human and bovine milk.	Petschow BW, Talbott RD.	J Clin Microbiol	10.1128/jcm.28.2.287-292.1990	1990
	Essential roles of monocytes in stimulating human peripheral blood mononuclear cells with Lactobacillus casei to produce cytokines and augment natural killer cell activity.	Shida K, Suzuki T, Kiyoshima-Shibata J, Shimada S, Nanno M.	Clin Vaccine Immunol	10.1128/cvi.00076-06	2006
Enzymology	Cloning and characterization of the bile salt hydrolase genes (bsh) from Bifidobacterium bifidum strains.	Kim GB, Miyamoto CM, Meighen EA, Lee BH.	Appl Environ Microbiol	10.1128/aem.70.9.5603-5612.2004	2004
	The sequence of the single 16S rRNA gene of the thermophilic eubacterium Rhodothermus marinus reveals a distant relationship to the group containing Flexibacter, Bacteroides, and Cytophaga species.	Andresson OS, Fridjonsson OH.	J Bacteriol	10.1128/jb.176.20.6165-6169.1994	1994
	Role of peptidoglycan subtypes in the pathogenesis of bacterial cell wall arthritis.	Simelyte E, Rimpilainen M, Zhang X, Toivanen P.	Ann Rheum Dis	10.1136/ard.62.10.976	2003
Biotechnology	Recent advances in the application of ultrasound in dairy products: Effect on functional, physical, chemical, microbiological and sensory properties.	Carrillo-Lopez LM, Garcia-Galicia IA, Tirado-Gallegos JM, Sanchez-Vega R, Huerta-Jimenez M, Ashokkumar M, Alarcon-Rojo AD.	Ultrason Sonochem	10.1016/j.ultsonch.2021.105467	2021
Enzymology	Distribution of the phosphoenolpyruvate:glucose phosphotransferase system in fermentative bacteria.	Romano AH, Trifone JD, Brustolon M.	J Bacteriol	10.1128/jb.139.1.93-97.1979	1979
Phylogeny	Quantification of different Eubacterium spp. in human fecal samples with species-specific 16S rRNA-targeted oligonucleotide probes.	Schwiertz A, Le Blay G, Blaut M.	Appl Environ Microbiol	10.1128/aem.66.1.375-382.2000	2000
	Evaluation of Gonozyme, an enzyme immunoassay for the rapid diagnosis of gonorrhea.	Manis RD, Harris B, Geiseler PJ.	J Clin Microbiol	10.1128/jcm.20.4.742-746.1984	1984
Pathogenicity	Amelioration of cognitive and behavioral damage by Bifidobacterium breve 05 via regulation of BDNF/NeuN and LPS/Iba1/abeta expression.	Zhou S, Ma X, Nie H, Mu G, Wu X.	Int J Food Sci Nutr	10.1080/09637486.2025.2584325	2025
Genetics	Strain-Level Differences of Bifidobacterium breve in the Gut Microbiome between Infants with and without Atopic Dermatitis: Insights from Genome Analysis and Immune Assays.	Lee I, Kim SH, Lee MJ, Oh A, Lee YK, Lee KJ, Kim BS.	J Microbiol Biotechnol	10.4014/jmb.2509.09032	2025
	Bifidobacterium breve B2798 and Its Heat-Killed Cells Alleviate Inflammation in Rats with DSS Model by Modulating Gut Microbiota.	Feng C, Zhao Y, He Q, Yu J, Sun Z.	Probiotics Antimicrob Proteins	10.1007/s12602-025-10648-6	2025
	Modelling Metabolic Disorders with Stem Cell-Derived Gut and Liver Organoids: Insights into Probiotic Therapies.	Chauhan SB, Garg T, Jain C, Singh I.	Recent Adv Food Nutr Agric	10.2174/012772574x399047251006043349	2025
	Comprehensive analysis of cell-associated fatty acids in Bifidobacterium strains.	Murakami R, Xiao JZ, Hara KY, Odamaki T, Kikukawa H.	Biosci Biotechnol Biochem	10.1093/bbb/zbaf144	2025
	Characteristics, immobilization of linoleic acid isomerase from Bifidobacterium breve and its application in rice bran oil	Li L, Wang N, Wang L, Yang F, Wang W, Han Y, Yu D.	Food Research International.		2025
Metabolism	Bifidobacterium breve M-16V Alleviates Cow's Milk Allergy in a Mouse Model via Gut Microbiota-Derived Indole-3-Propionic Acid-Aryl Hydrocarbon Receptor Signaling Axis.	Shao H, Min F, Bai T, Wang Z, Liu Y, Yang F, Li Z, Di C, Lin M, Li X, Chen H.	Allergy	10.1111/all.16684	2025
	Evaluating the prebiotic potential of a glucan EPS from Enterococcus hirae OL616073: Digestive resistance, probiotic growth stimulation, and gut microbiome modulation.	Tiwari S, Shah IA, Devi PB, Suryavanshi MV, Rani PU, Rawat A, Harini Nivedhitha M, Kondepudi KK, Bhanuprakash Reddy G, Kavitake D, Shetty PH.	Food Res Int	10.1016/j.foodres.2025.117649	2025
	Comparative Effects of Co-administration of Lactobacillus casei and Bifidobacterium breve vs. Monotherapy on Hippocampal Neurodegeneration in a D-Galactose-Induced Aging Model.	Hamzeh O, Halaji M, Ghasemi-Kasman M, Parsian H, Rostami-Mansoor S.	Mol Neurobiol	10.1007/s12035-025-05093-z	2025
	An older man with Bifidobacterium breve bacteremia, a rare condition in adults: A case report.	Muramatsu M, Akine D, Sasahara T, Suzuki T, Tamura T, Kaburagi T, Watanabe S.	Anaerobe	10.1016/j.anaerobe.2025.102968	2025
	Maternal gut microbiota transmission and early-life colonization patterns influence infant CMPA risk.	Zhang L, Ge X, Shen P, Zhou Y, Hu S, Xu H.	Microbiol Spectr	10.1128/spectrum.01162-25	2025
	Bifidobacterium breve HH079 alleviates early-life antibiotic-exposed colon dysbiosis in mice by restoring the gut microbiota and gut barrier function.	Gu Z, Lu Z, Wu JY, Xie Z, Hu R, Huang Q, Liu F, Zhang B.	Food Funct	10.1039/d5fo00535c	2025
Pathogenicity	Probiotics restore GABAergic neurons and attenuate postnatal seizures in periventricular leukomalacia.	Chen JS, Tu MJ, Chang YM, Tu YF, Chiang CW.	Nutr Neurosci	10.1080/1028415x.2025.2574964	2025
	Probiotic strain identification and safety assessment of unlabeled bacteria in infant products.	Wang N, Wu Y, Liu Y, Wen Q, Bai F, Tan Y, Cui Y, Liu X, Bi Y, Yang R, Luo P.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2025.111500	2026
Enzymology	Improved Substrate Specificity of Fatty Acid Hydratases Enables Efficient and Selective Linoleic Acid Isolation.	Lu D, Jin S, Wu Q, Liu J, Wang F, Deng L, Nie K.	J Agric Food Chem	10.1021/acs.jafc.5c07478	2025
Enzymology	Characteristics, immobilization of linoleic acid isomerase from Bifidobacterium breve and its application in rice bran oil.	Li L, Wang N, Wang L, Yang F, Wang W, Han Y, Yu D.	Food Res Int	10.1016/j.foodres.2025.116518	2025
	Probiotic-Derived Strain-Specific Metabolites Ameliorate Metabolic Dysfunction-Associated Steatotic Liver Disease through Modulation of the Gut-Liver Axis.	Yoon SJ, Choi J, Won SM, Yu JS, Kim HY, Joung HC, Park IG, Eom JA, Han SH, Lee DY, Suk KT.	Probiotics Antimicrob Proteins	10.1007/s12602-025-10761-6	2025
	Bifidobacterium breve BBr60 Enhances SCFA Levels and Restores NLRP3/NLRP6 Balance in the Gut to Improve Motor Deficits in PD Mice.	An PP, Liang XY, Yao XY, Liao ZH, Tang YC, Cao N, Wang Z, Wang W, Niu HY, Tang CX, Chen J.	Probiotics Antimicrob Proteins	10.1007/s12602-025-10576-5	2025
	L.Fermentum CECT5716 and B.Breve CECT7263 on premature infants morbidities: a randomized clinical trial.	Hurtado Suazo JA, Alonso Ojembarrena A, Sanchez Tamayo T, Martin Alvarez E, Saez ME, Martinez Pardo L, Diez Delgado Rubio J, Granero Asencio M, Serrano Lopez L, Maldonado-Lobon JA, Mora Navarro D, de Benito Guerra MT, Torres Begara E, Ruiz Moreno JA, Macias Diaz C, Lloreda Garcia JM, Pena Caballero M, Olivares M, Blanco-Rojo R.	Pediatr Res	10.1038/s41390-025-04633-6	2025
	Altered gut microbiota composition and feeding behaviours in children with Autism Spectrum Disorder: a comparative pilot study.	Toscano de Oliveira M, Borges Scriboni Gonzalez MA, Rosetto Boiate JV, Mesa V, Goncalves DH, Gisse Pinto M, Ramos da Silva Pinto C, Costa Gomes Filho JE, Sivieri K.	Ann Hum Biol	10.1080/03014460.2025.2535430	2025
	Role of sn-2 palmitate on the development of the infant gut microbiome: A metagenomic insight	Wang S, Zheng C, Bu C, Guo D, Zhang C, Xie Q, Pan J, Sun J, Chen W, Jiang S, Zhai Q.	Food Research International.		2025
Pathogenicity	An updated systematic review and appraisal of the pathophysiologic mechanisms of probiotics in alleviating depression.	Sulaiman NNY, Mohamad Nizam NB, Mohd Noor NA, Lim SM, Ramasamy K, Alabsi AM, Ismail MF.	Nutr Neurosci	10.1080/1028415x.2025.2531357	2025
	Oligosaccharide production using beta-galactosidase from Lactobacillus bulgaricus and Kluyveromyces lactis in sweetened reconstituted nonfat dry milk.	Guron GKP, Hotchkiss AT, Bodnar BH, Harron A, Renye JA, McAnulty MJ.	J Dairy Sci	10.3168/jds.2025-26396	2025
	Metabolic diversity and competitive interactions of infant-derived bifidobacteria in human milk oligosaccharides and galacto-oligosaccharide utilization.	He S, Chen C, Cao L, Nauta A, Liu X, Chen H, Spoelstra J, Yang B.	J Dairy Sci	10.3168/jds.2025-26559	2025
	Heterologous Expression and Polyphasic Analysis of CLA-Converting Linoleic Acid Isomerase from Bifidobacterium breve JKL2022.	Elnar AG, Jang Y, Kim GB.	J Agric Food Chem	10.1021/acs.jafc.4c05746	2025
	Polymicrobial Emphysematous Pyelonephritis Secondary to Bifidobacterium breve and Klebsiella pneumoniae in a Diabetic Patient on Peritoneal Dialysis.	Ng IK, Koh HK, Tulsidas H.	Oman Med J	10.5001/omj.2025.18	2025
Phylogeny	Evaluation of kefir consumption on gut microbial diversity in a healthy young population using full-length 16S rRNA sequencing.	Choi Y, Keum GB, Kang J, Doo H, Kwak J, Kim H, Chae Y, Lee S, Yang H, Kim S, Sun X, Kim HB, Yoo SJ.	Front Microbiol	10.3389/fmicb.2025.1587831	2025
	Protective Role of Nano-encapsulated Bifidobacterium breve, Bacilllus coagulans, and Lactobacillus plantarum in Colitis Model: Insights Toward Propagation of Short-Chain Fatty Acids and Reduction of Exaggerated Inflammatory and Oxidative Response.	Ibrahim D, Khater SI, Sherkawy HS, Elgamal A, Hasan AA, Muhammed AA, Farag MFM, Eissa SA, Ismail TA, Eissa HM, Eskandrani AA, Alansari WS, El-Emam MMA.	Probiotics Antimicrob Proteins	10.1007/s12602-025-10472-y	2025
Phylogeny	Impact of an Integrated Intervention Package During Preconception, Pregnancy, and Early Childhood on the Gut Microbiome at Six Months of Age: Findings from the Women and Infants Integrated Growth Study (WINGS) Randomized Controlled Trial.	Chowdhury R, Maddheshiya A, Taneja S, Bhandari N, Majumder PP, Strand TA, Pandey RM, Kurpad AV, Mukherjee S.	J Nutr	10.1016/j.tjnut.2025.04.016	2025
Genetics	Genome-scale resources in the infant gut symbiont Bifidobacterium breve reveal genetic determinants of colonization and host-microbe interactions.	Shiver AL, Sun J, Culver R, Violette A, Wynter C, Nieckarz M, Mattiello SP, Sekhon PK, Bottacini F, Friess L, Carlson HK, Wong DPGH, Higginbottom S, Weglarz M, Wang W, Knapp BD, Guiberson E, Sanchez J, Huang PH, Garcia PA, Buie CR, Good BH, DeFelice B, Cava F, Scaria J, Sonnenburg JL, Van Sinderen D, Deutschbauer AM, Huang KC.	Cell	10.1016/j.cell.2025.02.010	2025
	Investigation of associations between the neonatal gut microbiota and severe viral lower respiratory tract infections in the first 2 years of life: a birth cohort study with metagenomics.	Garcia-Maurino C, Shao Y, Miltz A, Lawley TD, Rodger A, Field N.	Lancet Microbe	10.1016/j.lanmic.2024.101072	2025
	Lacticaseibacillus casei- and Bifidobacterium breve-fermented red pitaya promotes beneficial microbial proliferation in the colon.	Cao L, Wan M, Xian Z, Zhou Y, Dong L, Huang F, Su D.	Food Funct	10.1039/d4fo02352h	2024
Genetics	Role of sn-2 palmitate on the development of the infant gut microbiome: A metagenomic insight.	Wang S, Zheng C, Bu C, Guo D, Zhang C, Xie Q, Pan J, Sun J, Chen W, Jiang S, Zhai Q.	Food Res Int	10.1016/j.foodres.2025.116488	2025
	The interplay between gut microbiota composition and dementia.	Ghannadzadeh Kermani Pour R, Kamali Zounouzi S, Farshbafnadi M, Rezaei N.	Rev Neurosci	10.1515/revneuro-2024-0113	2025
	Gut-brain axis in adolescent depression: a systematic review of psychological implications and behavioral interventions.	Liu H, Li X, Shi Y, Hong K, Wang X, Huang C.	Front Nutr	10.3389/fnut.2025.1644245	2025
	Production of conjugated fatty acids in probiotic-fermented walnut milk with the addition of lipase	Mao B, Guo W, Huang Z, Tang X, Zhang Q, Yang B, Zhao J, Cui S, Zhang H.	Lebensm Wiss Technol		2024
	Bifidobacterium longum subsp. longum relieves loperamide hydrochloride-induced constipation in mice by enhancing bile acid dissociation.	Zhang C, Wang L, Liu X, Wang G, Zhao J, Chen W.	Food Funct	10.1039/d4fo04660a	2025
	Effects of Probiotic-Fermented Deer Bone Water Extract on Immune Regulation and Gut Microbiota in Rheumatoid Arthritis via the NOTCH Signaling Pathway.	Ma J, Jiang Y, Teng Y, Ren T, Xing Y, Li A, He Z, Chen W, Zong Y, Du R.	Foods	10.3390/foods14213802	2025
	Effects of a live versus heat-inactivated probiotic Bifidobacterium spp in preterm infants: a randomised clinical trial.	Athalye-Jape G, Esvaran M, Patole S, Nathan EA, Doherty DA, Sim E, Chandrasekaran L, Kok C, Schuster S, Conway P.	Arch Dis Child Fetal Neonatal Ed	10.1136/archdischild-2023-326667	2025
Pathogenicity	Cell-Free Supernatant of Lactobacillus rhamnosus and Bifidobacterium breve Ameliorates Ischemic Stroke-Generated Neurological Deficits in Rats.	Rahman Z, Padhy HP, Dandekar MP.	Probiotics Antimicrob Proteins	10.1007/s12602-024-10256-w	2025
	Impact of two human milk oligosaccharides and lactose on the faecal microbiome of infants with probable cow's milk allergy.	Van den Abbeele P, Heine RG, Van de Vliet M, Favre L, Tytgat HLP, Sprenger N, Deyaert S, Baudot A, Nutten S.	Benef Microbes	10.1163/18762891-bja00048	2024
	Enhancement of the flavor and functional characteristics of cod protein isolate using an enzyme-microbe system.	Yan ZF, Chen JY, Yang J, Yuan S, Qiao XY, Xu B, Su LQ.	Food Funct	10.1039/d4fo02272f	2024
	Marked reduction of SARS-CoV-2 infection and improved recovery following supplementation with a probiotic mix of four strains and two strains of Bifidobacterium breve in hamsters.	Torres-Maravilla E, Wasniewski M, Wauquier A, Servat A, Picard-Meyer E, Monchatre-Leroy E, Auger S, Holowacz S, Boue F, Langella P, Jacouton E, Waligora-Dupriet A-J.	Appl Environ Microbiol	10.1128/aem.00648-25	2025
	Growth-independent CLA production by Bifidobacterium breve JKL2022 and the potential transcriptional regulatory role of TetR in linoleic acid isomerase expression.	Elnar AG, Kim GB.	Microb Cell Fact	10.1186/s12934-025-02766-1	2025
Metabolism	Bifidobacterium breve Protects the Intestinal Epithelium and Mitigates Inflammation in Colitis via Regulating the Gut Microbiota-Cholic Acid Pathway.	Li Y, Xu H, Zhou L, Zhang Y, Yu W, Li S, Gao J.	J Agric Food Chem	10.1021/acs.jafc.3c08527	2024
	Effects of Bifidobacterium on metabolic parameters in overweight or obesity adults: a systematic review and meta-analysis.	Huang J, Cheng H.	Front Microbiol	10.3389/fmicb.2025.1633434	2025
	Placental endocrine function is controlled by maternal gut Bifidobacterium in germ-free mice.	Lopez-Tello J, Kiu R, Schofield Z, Dalby MJ, van Sinderen D, Gall GL, Hall LJ, Sferruzzi-Perri AN.	J Transl Med	10.1186/s12967-025-07198-4	2025
	Gut Microbiota-Directed Interventions in Type 2 Diabetes: A Systematic Review of Clinical Outcomes and Complication Risk.	Ur Rehman M, Saeed H, Omer O, Tashfeen S.	Cureus	10.7759/cureus.95045	2025
	Prebiotic, probiotic, and postbiotic properties of fermented corn starch and their application in type 2 diabetes management.	Gumenku L, Erukainure OL, Islam MS, Olaniran AO.	World J Diabetes	10.4239/wjd.v16.i8.107775	2025
	Oral aged garlic (Allium sativum) alleviates ulcerative colitis in mice by improving gut homeostasis.	Han D, Guan X, Zhu F, Yang Q, Su D.	Food Funct	10.1039/d4fo03105a	2024
	Oral supplementation with probiotics, potassium citrate, and magnesium in reducing crystalluria in stone formers: A phase II study.	Vittori M, Bove P, Signoretti M, Cipriani C, Gasparoli C, Antonucci M, Carilli M, Maiorino F, Iacovelli V, Petta F, Travaglia S, Panei M, Russo P, Bertolo R.	Urologia	10.1177/03915603241272146	2024
	Determining the emotional regulation function of Bifidobacterium breve: the role of gut metabolite regulation over colonization capability.	Qian X, Tian P, Guo M, Yang H, Zhang H, Wang G, Chen W.	Food Funct	10.1039/d3fo02739b	2024
	Imaging and Microorganism Analyses of the Effects of Oral Bifidobacterium breve Intake on Facial Skin in Females: A Randomized, Double-Blind, Placebo-Controlled Study.	Nishikawa Y, Xu C, Yoshimoto S, Katsumata N, Iwabuchi N, Yanagisawa N, Koido S, Tanaka M, Xiao JZ, Asaoka D, Ohkusa T, Sato N.	Nutrients	10.3390/nu17182976	2025
	Bifidobacterium breve M-16V regulates the autonomic nervous system via the intestinal environment: A double-blind, placebo-controlled study.	Mutoh N, Moriya M, Xu C, Kato K, Arai S, Iwabuchi N, Tanaka M, Jinghua Y, Itamura R, Sakatani K, Warisawa S.	Behav Brain Res	10.1016/j.bbr.2023.114820	2024
	Structural Characterization and Immunomodulatory Activity of a Mannose-Rich Polysaccharide Isolated from Bifidobacterium breve H4-2.	Niu MM, Guo HX, Shang JC, Meng XC.	J Agric Food Chem	10.1021/acs.jafc.3c04916	2023
	The Characteristics of Gut Microbiota and Its Relation with Diet in Postmenopausal Osteoporosis.	Chen T, Meng F, Wang N, Hao Y, Fu L.	Calcif Tissue Int	10.1007/s00223-024-01260-x	2024
	Bifidobacterium breve Bif195 ameliorates aspirin-induced gastric mucosal damage: A randomised, double blind, placebo-controlled crossover trial.	Lon N, Engel S, Damholt A, Mortensen B, Haaber AB, Wellejus A, Knop FK.	Aliment Pharmacol Ther	10.1111/apt.17817	2024
	Bifidobacterium Bloodstream Infection in a Lymphoma Patient Undergoing Chemotherapy: A Case Study and Implications for Probiotic Use.	Imataki O, Uemura M.	Am J Case Rep	10.12659/ajcr.944687	2024
	Bifidobacterium infantis and Bifidobacterium breve Improve Symptomatology and Neuronal Damage in Neurodegenerative Disease: A Systematic Review.	Reiriz M, Beltran-Velasco AI, Echeverry-Alzate V, Martinez-Miguel E, Gomez-Senent S, Uceda S, Clemente-Suarez VJ.	Nutrients	10.3390/nu17030391	2025
Genetics	Genomic characterization and probiotic assessment of Bifidobacterium breve JKL2022 with strain-specific CLA-converting properties.	Elnar AG, Eum B, Kim GB.	Sci Rep	10.1038/s41598-025-98770-x	2025
Pathogenicity	Psychobiotics Regulate Purine Metabolism to Influence Host Emotional Behavior.	Qian X, Jiang J, Yang B, Zhao J, Wang G, Tian P, Chen W.	J Agric Food Chem	10.1021/acs.jafc.3c06422	2024
	Probiotics and Fever Duration in Children With Upper Respiratory Tract Infections: A Randomized Clinical Trial.	Bettocchi S, Comotti A, Elli M, De Cosmi V, Berti C, Alberti I, Mazzocchi A, Rosazza C, Agostoni C, Milani GP.	JAMA Netw Open	10.1001/jamanetworkopen.2025.0669	2025
Genetics	The effects of probiotic treatment with Bifidobacterium breve, Bif195 for small intestinal Crohn's disease and the gut microbiome: results from a randomised, double-blind, placebo-controlled trial.	Gronbaek IMB, Halkjaer SI, Mollerup S, Hansen EH, Paulsen SJ, Engel S, Theede K, Wilkens R, Boysen T, Petersen AM.	Gut Pathog	10.1186/s13099-025-00692-6	2025
	No differences were observed in the prevention of necrotizing enterocolitis and late-onset sepsis among preterm infants who received either single-species or multi-species probiotics.	Korcek P, Stranak Z.	Early Hum Dev	10.1016/j.earlhumdev.2024.106054	2024
	Investigating the potential of yacon (Smallanthus sonchifolius) juice in the development of organic apple-based snacks.	Braschi G, Njieukam JA, Gottardi D, Genovese J, Tylewicz U, Patrignani F, Rocculi P.	Heliyon	10.1016/j.heliyon.2024.e32342	2024
	Bifidobacterium breve Probiotic Compared to Lactobacillus casei Causes a Better Reduction in Demyelination and Oxidative Stress in Cuprizone-Induced Demyelination Model of Rat.	Hasaniani N, Ghasemi-Kasman M, Halaji M, Rostami-Mansoor S.	Mol Neurobiol	10.1007/s12035-023-03593-4	2024
	Isolation, identification, and in vitro probiotic characterization of forty novel Bifidobacterium strains from neonatal feces in Erzurum province, Türkiye	Guler MA, Cetin B, Albayrak B, Meral-Aktas H, Tekgunduz KS, Kara M, Islek A.	Journal of the Science of Food and Agriculture.		2024
Phylogeny	Longitudinal changes in bifidobacterial population during the first two years of life.	An R, Fontana F, Van Daele E, Ventura M, Vlieger A, van Elburg RM, Knol J, Milani C, Belzer C.	Benef Microbes	10.1163/18762891-bja00012	2024
	[Assessment of species diversity of anaerobic intestinal microbiota in children and adolescents with exogenous constitutional obesity].	Migacheva NB, Skvortsova OV, Lyamin AV, Alekseev DV, Kayumov KA, Antipov VA.	Vopr Pitan	10.33029/0042-8833-2024-93-3-14-22	2024
	Probiotics for children with asthma: a systematic review and meta-analysis.	Liu Y, Zhang Y, Li Y, Zhang X, Xie L, Liu H.	Front Pediatr	10.3389/fped.2025.1577152	2025
Genetics	Scarless gene disruption enabled by a dual-plasmid knockout platform in a clinical infant-derived Bifidobacterium breve strain.	Gao Z, Feng L.	Front Microbiol	10.3389/fmicb.2025.1653505	2025
	Probiotic Modulation in Aging: Strain-Specific Geroprotective Effects in Caenorhabditis elegans.	Sciandrone B, Squarzanti DF, Malfa P, Regonesi ME.	Int J Mol Sci	10.3390/ijms262211205	2025
	Bifidobacterium breve BB05 alleviates depressive symptoms in mice via the AKT/mTOR pathway.	Pan Y, Huang Q, Liang Y, Xie Y, Tan F, Long X.	Front Nutr	10.3389/fnut.2025.1529566	2025
	Effects of Lactiplantibacillus plantarum CBT LP3 and Bifidobacterium breve CBT BR3 supplementation on weight loss and gut microbiota of overweight dogs.	Choi J, Son D, An S, Cho E, Lim S, Lee HJ.	Sci Rep	10.1038/s41598-024-75594-9	2024
	Physicochemical properties and biological activities of litchi glycans with different molecular weights	Tan F, Yu Y, Xu Y, Wu J, Xiao G, Hu T.	International journal of food science and technology.		2024
	Microbiota-A Rescuing Modulator in Children Struggling with Functional Constipation.	Tomsa NA, Melit LE, Popescu T, Najjar K, Vasiesiu AM, Pop AV, Borka-Balas R.	Microorganisms	10.3390/microorganisms13071504	2025
	In vitro faecal fermentation metabolites of 2'-fucosyllactose protect against intestinal epithelial injury: Infant enterotype effects	Gu Z, Xu S, Zheng Y, Lane JA, Dhital S, Huang Q, Hu R, Liu F, Zhang B.	Int Dairy J		2023
Genetics	Detection of colonization capacity of probiotic Bifidobacterium breve CCFM1025 in the human gut.	Qian X, Tian P, Lin G, Xu X, Wang G, Zhang H, Chen W.	Future Microbiol	10.2217/fmb-2022-0131	2023
	The Potential of Probiotics in Reducing Ventilator-Associated Pneumonia: A Literature-Based Analysis.	Chen TA, Chuang YT, Pai SC, Zheng JF.	Microorganisms	10.3390/microorganisms13040856	2025
Pathogenicity	Probiotic Supplementation Improves the Clinical Measures of Cognition in Patients With Mild Cognitive Impairment.	Assad A, Johnson SL, Reichard RA.	Cureus	10.7759/cureus.89302	2025
	Efficacy of probiotics as adjuvant therapy in bronchial asthma: a systematic review and meta-analysis.	Balan D, Baral T, Manu MK, Mohapatra AK, Miraj SS.	Allergy Asthma Clin Immunol	10.1186/s13223-024-00922-7	2024
	Bifidobacterium breve CBT BR3 is effective at relieving intestinal inflammation by augmenting goblet cell regeneration.	Park IS, Kim JH, Yu J, Shin Y, Kim K, Kim TI, Kim SW, Cheon JH.	J Gastroenterol Hepatol	10.1111/jgh.16209	2023
	Deconjugating taurocholic acid with Bifidobacterium to mitigate obesity-driven cancer progression by restoring CD8⁺ T-cell infiltration.	Yuan R, Li Y, Wang Y, Li Q, Guo C, Wang L.	NPJ Biofilms Microbiomes	10.1038/s41522-025-00809-4	2025
	Osteopontin enhances the probiotic viability of Bifidobacteria in pectin-based microencapsulation subjected to in vitro infant gastrointestinal digestion	Huang Y, Lu Z, Liu F, Lane J, Chen J, Fuehrer B, Huang Q, Hu R, Zhang B.	Food hydrocolloids.		2023
Pathogenicity	Combination of Bifidobacterium breve and antibiotics against Clostridioides difficile: effect of the time interval of combination on antagonistic activity.	Yang J, Li Y, Meng L.	Int Microbiol	10.1007/s10123-023-00340-6	2023
Pathogenicity	Meta-analytical insight on probiotic metabolites and inflammatory markers in diabetes.	Xie Y, Zheng Y, Jiang F, Cai X.	Front Cell Infect Microbiol	10.3389/fcimb.2025.1677671	2025
Metabolism	Modulation of Serum Metabolic Profiles by Bifidobacterium breve BBr60 in Obesity: A Randomized Controlled Trial.	Wu Y, Gao D, Pan Y, Dong Y, Bai Z, Gu S.	Foods	10.3390/foods13223655	2024
	Gut microbiota as a novel target for treating anxiety and depression: from mechanisms to multimodal interventions.	Ruohan Z, Ruting W, Hongxi W, Zhenjin H, Jiale L, Rongxin Z, Feng J, Yuanbo S.	Front Microbiol	10.3389/fmicb.2025.1664800	2025
	Efficacy and safety of probiotic supplements on cognitive function: a systematic review and meta-analysis of randomized clinical trials.	Calzada-Gonzales N, Moreno-Colina I, Chu-Fuentes L, Andrade-Giron D, Tito-Chura HE, Quispe-Vicuna C, Torres-Balarezo PI, Bautista-Pariona A, Barboza JJ.	BMC Complement Med Ther	10.1186/s12906-025-05149-6	2025
	Gut microbiota associated with equol production in school-age children.	Wada K, Suda W, Ueno T, Masuoka H, Yamakawa M, Nakashima Y, Sugino M, Mori T, Uchiyama S, Sumoto Y, Kiguchi Y, Hattori M, Nagata C.	Eur J Nutr	10.1007/s00394-025-03625-w	2025
	Gut microbes associated with functional cure of chronic hepatitis B.	Honda T, Ishigami M, Ishizu Y, Imai N, Ito T, Yamamoto K, Yokoyama S, Muto H, Inukai Y, Kato A, Murayama A, Yoshio S, Ishikawa T, Fujishiro M, Kawashima H, Kato T.	Hepatol Int	10.1007/s12072-025-10776-9	2025
	Changes in Human Colonic Microbiota Promoted by Synbiotic Açai Juice Composed of Gluco-Oligosaccharides, Dextran, and Bifidobacterium breve NRRL B-41408.	Reges BM, da Silva Oliveira FA, Fonteles TV, Rodrigues S.	Foods	10.3390/foods13244121	2024
	Development and clinical assessment of a novel probiotic candy in the prevention of respiratory infections in asthmatic children.	Tafrishi R, Ahanchian H, Jafari SA, Pahlevanloo A, Kianifar H, Kiani M, Moazzen N, Sadeghi T, Sly PD.	World Allergy Organ J	10.1016/j.waojou.2024.101023	2025
	Isolation, identification, and in vitro probiotic characterization of forty novel Bifidobacterium strains from neonatal feces in Erzurum province, Türkiye.	Guler MA, Cetin B, Albayrak B, Meral-Aktas H, Tekgunduz KS, Kara M, Islek A.	J Sci Food Agric	10.1002/jsfa.13298	2024
Phylogeny	Progression of gut microbiome in preterm infants during the first three months.	Li F, Hooi SL, Choo YM, Teh CSJ, Toh KY, Lim LWZ, Lee YQ, Chong CW, Ahmad Kamar A.	Sci Rep	10.1038/s41598-025-95198-1	2025
	Bifidobacterium breve HNXY26M4 Attenuates Cognitive Deficits and Neuroinflammation by Regulating the Gut-Brain Axis in APP/PS1 Mice.	Zhu G, Zhao J, Wang G, Chen W.	J Agric Food Chem	10.1021/acs.jafc.3c00652	2023
	Targeting the Microbiota Reverses C-Section-Induced Effects on Intestinal Permeability, Microbiota Composition, and Amygdala Gene Expression in the Mouse.	Silva APV, Moloney GM, Sequeira AM, Liber M, Bastiaanssen T, Rea K, Fitzgerald P, Golubeva A, Rodriguez-Aburto M, Renes IB, Knol J, Dinan T, Cryan JF.	Neurogastroenterol Motil	10.1111/nmo.70107	2025
	A CRISPRi Gene Regulation System for Bifidobacteria.	Friess L, van Sinderen D, Lee C.	Microb Biotechnol	10.1111/1751-7915.70260	2025
Phylogeny	Source-tracking Klebsiella outbreaks in premature infants using a novel amplicon fingerprinting method.	Matson AP, Unterhauser K, Rezaul K, Lesmes S, Zhou Y, Michelow IC, Hussain N, Driscoll MD.	Antimicrob Resist Infect Control	10.1186/s13756-025-01609-3	2025
	Dark chocolate: delivery medium for probiotic Bifidobacterium breve NCIM 5671.	Achi SC, Chetana R, Asha MR, Raphel S, Halami PM.	J Food Sci Technol	10.1007/s13197-024-05958-6	2024
	Enhanced stress resistance of Bifidobacterium breve NRBB57 by induction of stress proteins at near-zero growth rates.	Camargo ARO, Van Mastrigt O, Bongers RS, Ben-Amor K, Knol J, Smid EJ, Abee T.	Benef Microbes	10.3920/bm2022.0074	2023
	Network meta-analysis of randomized control trials evaluating the effectiveness of various probiotic formulations in patients with type 2 diabetes mellitus.	Allam AR, Helal MB, Alhateem MS, Shehab MA, Elshaar AG, Saeda MA, Ibrahim FM, Khalil AM, Mahmoud AM.	Diabetol Metab Syndr	10.1186/s13098-025-01841-2	2025
	Gut microbiota and inflammatory mediators differentiate IgE mediated and non-IgE mediated cases of cow's milk protein at diagnosis.	Castro AM, Gutierrez-Diaz I, Saiz ML, Navarro S, Suarez M, Carbajal I, Garcia A, Sariego L, Toyos P, Rodriguez S, Jimenez S, Gonzalez D, Molinos C, Perez D, Fernandez P, Suarez-Alvarez B, Margolles A, Diaz JJ, Delgado S.	J Pediatr Gastroenterol Nutr	10.1002/jpn3.12155	2024
	Multistrain probiotic rescinds quinpirole-induced obsessive-compulsive disorder phenotypes by reshaping of microbiota gut-brain axis in rats.	Ghuge S, Rahman Z, Bhale NA, Dikundwar AG, Dandekar MP.	Pharmacol Biochem Behav	10.1016/j.pbb.2023.173652	2023
	Bifidobacterium breve CCFM1078 Alleviates Collagen-Induced Arthritis in Rats via Modulating the Gut Microbiota and Repairing the Intestinal Barrier Damage.	Li B, Ding M, Liu X, Zhao J, Ross RP, Stanton C, Yang B, Chen W.	J Agric Food Chem	10.1021/acs.jafc.2c04602	2022
	First case of necrotizing fasciitis and bacteremia caused by Bifidobacteriumbreve.	Wakabayashi Y, Nakayama S, Yamamoto A, Yoshino Y, Ishigaki S, Furukawa T, Kitazawa T.	Anaerobe	10.1016/j.anaerobe.2022.102613	2022
	Gut Microbiome and Metabolome Alterations in Overweight or Obese Adult Population after Weight-Loss Bifidobacterium breve BBr60 Intervention: A Randomized Controlled Trial.	Bai Z, Wu Y, Gao D, Dong Y, Pan Y, Gu S.	Int J Mol Sci	10.3390/ijms252010871	2024
	Synbiotics of Bifidobacterium breve MCC1274 and lactulose enhances production of tryptophan metabolites in fermented human fecal communities.	Hashikura N, Murakami R, Sakurai T, Horigome A, Toda K, Xiao JZ, Odamaki T.	Food Res Int	10.1016/j.foodres.2022.112308	2023
	Seeding and feeding: nutrition and birth-associated exposures shape gut microbiome assembly in breastfed infants.	Stinson LF, Norrish I, Mhembere F, Cheema AS, Mullally CA, Payne MS, Geddes DT.	Gut Microbes	10.1080/19490976.2025.2557981	2025
	Gut Microbiome Alterations Following Oral Serum-Derived Bovine Immunoglobulin Administration in the Management of Dysbiosis.	Hazan S, Bao G, Vidal A, Sfera A.	Cureus	10.7759/cureus.75884	2024
	Bifidobacterium breve M-16 V and scGOS/lcFOS Supplementation to Dams Ameliorates Infant Rotavirus Infection in Early Life.	Saez-Fuertes L, Rio-Aige K, Massot-Cladera M, Castell M, Knipping K, Garssen J, Bourdet-Sicard R, Rodriguez-Lagunas MJ, Collado MC, Perez-Cano FJ.	Mol Nutr Food Res	10.1002/mnfr.202400377	2024
	Screening and characterization of a beta-xylosidase from Bifidobacterium breve K-110 and its application in the biotransformation of the total flavonoids of epimedium to icariin with alpha-l-rhamnosidase.	Su J, Wu T, Cao S, Pei J, Zhao L.	Bioorg Chem	10.1016/j.bioorg.2023.106364	2023
Phylogeny	Comparison of Gut Microbiomes Between Neonates Born by Cesarean Section and Vaginal Delivery: Prospective Observational Study.	Pahirah N, Narkwichean A, Taweechotipatr M, Wannaiampikul S, Duang-Udom C, Laosooksathit W.	Biomed Res Int	10.1155/bmri/8302361	2024
	Strain-specific effects of probiotics on depression and anxiety: a meta-analysis.	Rahmannia M, Poudineh M, Mirzaei R, Aalipour MA, Shahidi Bonjar AH, Goudarzi M, Kheradmand A, Aslani HR, Sadeghian M, Nasiri MJ, Sechi LA.	Gut Pathog	10.1186/s13099-024-00634-8	2024
	Antagonistic activity of selenium-enriched Bifidobacterium breve against Clostridioides difficile.	Rui W, Gu C, Zhang H, Liao X, Zhao X, Xu Y, Yang J.	Appl Microbiol Biotechnol	10.1007/s00253-022-12124-5	2022
	Study on the mechanism of Coptis chinensis Franch. And its main active components in treating Alzheimer's disease based on SCFAs using Orbitrap Fusion Lumos Tribrid MS.	Xie M, Gu S, Hong Y, Liu Y, Rong X, Lu W, Liu H, Algradi AM, Naseem A, Shu Z, Wang Q.	J Ethnopharmacol	10.1016/j.jep.2023.116392	2023
	Ability of Bifidobacterium breve 702258 to transfer from mother to infant: the MicrobeMom randomized controlled trial.	Moore RL, Feehily C, Killeen SL, Yelverton CA, Geraghty AA, Walsh CJ, O'Neill IJ, Nielsan IB, Lawton EM, Sanchez-Gallardo R, Nori SRC, Shanahan F, Murphy EF, Van Sinderen D, Cotter PD, McAuliffe FM.	Am J Obstet Gynecol MFM	10.1016/j.ajogmf.2023.100994	2023
Phylogeny	Evaluation of kefir consumption on gut microbial diversity in a healthy young population using full-length 16S rRNA sequencing	Choi Y, Keum G, Kang J, Doo H, Kwak J, Kim H, Chae Y, Lee S, Yang H, Kim S, Sun X, Kim H, Yoo S.	Front Microbiol		2025
	Effects of breast-fed infants-derived Limosilactobacillus reuteri and Bifidobacterium breve ameliorate DSS-induced colitis in mice.	Huang Z, Liu B, Xiao L, Liao M, Huang L, Zhao X, Ma K, Wang R, Ji F, Li W, Huang L, Xie L.	iScience	10.1016/j.isci.2024.110902	2024
	A novel gut microbiome-immune axis influencing pathology in HCMV infected infants with neonatal cholestasis.	Karandikar K, Bhonde G, Palav H, Padwal V, Velhal S, Pereira J, Meshram H, Goel A, Shah I, Patel V, Bhor VM.	Microbes Infect	10.1016/j.micinf.2023.105165	2023
Genetics	Comparative Analysis of Microbiological Profiles and Antibiotic Resistance Genes in Subjects with Colorectal Cancer and Healthy Individuals.	Li J, Zhu Y, Chang Q, Gong Y, Wan J, Xu S.	Pol J Microbiol	10.33073/pjm-2025-006	2025
	Development of the preterm infant gut and gastric residuals microbiome.	Moriel N, Jones L, Harpenas E, Rakow N, Shmorak S, Eventov Friedman S, Ofek Shlomai N, Yassour M.	Nat Commun	10.1038/s41467-025-64819-8	2025
	Safety of Bifidobacterium breve, Bif195, employing a human exercise-induced intestinal permeability model: a randomised, double-blinded, placebo-controlled, parallel group trial.	Engel S, Mortensen B, Wellejus A, Vera-Jimenez N, Struve C, Brummer RJ, Damholt A, Woods T, Shanahan F.	Benef Microbes	10.3920/bm2021.0173	2022
	Restoration of gut microbiota with a specific synbiotic-containing infant formula in healthy Chinese infants born by cesarean section.	Wang Y, Wopereis H, Kakourou A, Liu M, Wu J, Li Z, Zhang L, Tan M, Low JSY, Liu M, Roeselers G, Knol J, Cai W.	Eur J Clin Nutr	10.1038/s41430-025-01571-8	2025
	Multistrain Probiotics with Fructooligosaccharides Improve Middle Cerebral Artery Occlusion-Driven Neurological Deficits by Revamping Microbiota-Gut-Brain Axis.	Rahman Z, Bhale NA, Dikundwar AG, Dandekar MP.	Probiotics Antimicrob Proteins	10.1007/s12602-023-10109-y	2024
	A randomized controlled study protocol of the TOBBI trial: the effect of a 6 weeks intervention with synbiotics on the recovery speed of the gut microbiota after antibiotic treatment in Dutch toddlers.	Klomp K, Alkema M, Knol J, Malinowska AM, Belzer C.	BMC Pediatr	10.1186/s12887-025-05405-1	2025
	Computational Analysis and Heterologous Expression of BBI-like Proteins from Food-Grade Bifidobacterium Species Reveal Possibly a Key Factor in Conjugated Linoleic Acid Bioconversion.	Mei Y, Chen H, Yang B, Zhao J, Zhang H, Chen W.	J Agric Food Chem	10.1021/acs.jafc.3c00857	2023
	Probiotics supplementation during pregnancy or infancy on multiple food allergies and gut microbiota: a systematic review and meta-analysis.	Jiang L, Zhang L, Xia J, Cheng L, Chen G, Wang J, Raghavan V.	Nutr Rev	10.1093/nutrit/nuae024	2025
	Composition of the intestinal microbiota of infant rhesus macaques at different ages before and after weaning	Li Y, Wang J, Liu Q, Yang F, Chen L, Xu H, Jin W, Liu Y, Zhang W, Yang F, He Z, Zhao Y.	Heliyon.		2023
	Anti-Menopausal Effect of Heat-Killed Bifidobacterium breve HDB7040 via Estrogen Receptor-Selective Modulation in MCF-7 Cells and Ovariectomized Rats.	Kim HJ, Kim KM, Yun MK, Kim D, Sohn J, Song JW, Lee S.	J Microbiol Biotechnol	10.4014/jmb.2402.02035	2024
	The prebiotic effect of 1-kestose in low-birth-weight neonates taking bifidobacteria: a pilot randomized trial in comparison with lactulose.	Tanaka S, Takahashi M, Takeshita K, Nagasawa K, Takei H, Sato H, Hishiki H, Ishiwada N, Hamada H, Kadota Y, Tochio T, Ishida T, Sasaki K, Tomita M, Osone Y, Takemura R, Shimojo N.	Biosci Microbiota Food Health	10.12938/bmfh.2023-079	2024
	Investigating acrylamide mitigation by potential probiotics Bifidobacterium breve and Lactiplantibacillus plantarum: Optimization, in vitro gastrointestinal conditions, and mechanism	Albedwawi AS, Al Sakkaf R, Osaili TM, Yusuf A, Olaimat A, Liu SQ, Palmisano G, Shah NP, Ayyash MM.	Lebensm Wiss Technol		2022
	Understanding the interaction between melatonin and bifidobacteria.	Rizzo SM, Longhi G, Tarracchini C, Argentini C, Viappiani A, Bianchi MG, Bussolati O, van Sinderen D, Ventura M, Turroni F.	Microbiome Res Rep	10.20517/mrr.2025.10	2025
	Single Strain vs Multiple Strain Probiotics: The Clinician's Choice.	Kesavelu D, Yadav Krishnamurty A, A P.	Cureus	10.7759/cureus.86353	2025
	Maternal Milk Orchestrates the Development of Infant Gut Microbiota: Implications for Health and Future Research Directions.	Wang R, Sun S, Zhang Q, Wu G, Ren F, Chen J.	Research (Wash D C)	10.34133/research.0558	2025
Phylogeny	Gut microbiota associated with the mitigation effect of synbiotics on adverse events of neoadjuvant chemotherapy in patients with esophageal cancer: A retrospective exploratory study.	Sugimoto T, Atobe S, Kado Y, Takahashi A, Motoori M, Sugimura K, Miyata H, Yano M, Tanaka K, Doki Y, Shiraishi O, Yasuda T, Asahara T.	J Med Microbiol	10.1099/jmm.0.001723	2023
	O-acetylesterase activity of Bifidobacterium bifidum sialidase facilities the liberation of sialic acid and encourages the proliferation of sialic acid scavenging Bifidobacterium breve.	Yokoi T, Nishiyama K, Kushida Y, Uribayashi K, Kunihara T, Fujimoto R, Yamamoto Y, Ito M, Miki T, Haneda T, Mukai T, Okada N.	Environ Microbiol Rep	10.1111/1758-2229.13083	2022
	Multi-omics reveals that Bifidobacterium breve M-16V may alleviate the immune dysregulation caused by nanopolystyrene.	Li N, Wang J, Liu P, Li J, Xu C.	Environ Int	10.1016/j.envint.2022.107191	2022
	Impact of Combined Prebiotic Galacto-Oligosaccharides and Bifidobacterium breve-Derived Postbiotic on Gut Microbiota and HbA1c in Prediabetic Adults: A Double-Blind, Randomized, Placebo-Controlled Study.	Beteri B, Barone M, Turroni S, Brigidi P, Tzortzis G, Vulevic J, Sekulic K, Motei DE, Costabile A.	Nutrients	10.3390/nu16142205	2024
	Bifidobacterium breve-derived indole-3-lactic acid ameliorates colitis-associated tumorigenesis by directing the differentiation of immature colonic macrophages.	Li Y, Li Q, Yuan R, Wang Y, Guo C, Wang L.	Theranostics	10.7150/thno.92350	2024
	Exploring the causal relationship of gut microbiota in nonunion: a Mendelian randomization analysis mediated by immune cell.	Yu YF, Gong HF, Li WJ, Wu M, Hu G.	Front Microbiol	10.3389/fmicb.2024.1447877	2024
	Oral Administration of Probiotic Bifidobacterium breve Ameliorates Tonic-Clonic Seizure in a Pentylenetetrazole-Induced Kindling Mouse Model via Integrin-Linked Kinase Signaling.	Ishii T, Kaya M, Muroi Y.	Int J Mol Sci	10.3390/ijms25179259	2024
Metabolism	Multi-Strain Probiotics Alleviate Food Allergy-Induced Neurobehavioral Abnormalities by Regulating Gut Microbiota and Metabolites.	Hu S, Li L, Zhou C, Zhang Y, Yu X.	Nutrients	10.3390/nu17121955	2025
	In Vitro Probiotic Modulation of Specific Dietary Complex Sugar Consumption in Fecal Cultures in Infants.	Mollova D, Baev V, Iliev I.	Microorganisms	10.3390/microorganisms13102352	2025
	Contribution of the capsular polysaccharide layer to antibiotic resistance in bifidobacteria.	Argentini C, Tarracchini C, Alessandri G, Longhi G, Milani C, van Sinderen D, Ventura M, Turroni F.	FEMS Microbiol Ecol	10.1093/femsec/fiad032	2023
	Cervicovaginal microbiome in patients with recurrent pregnancy loss.	Mori R, Hayakawa T, Hirayama M, Ozawa F, Yoshihara H, Goto S, Kitaori T, Ozaki Y, Sugiura-Ogasawara M.	J Reprod Immunol	10.1016/j.jri.2023.103944	2023
	Bacteraemia and obstructive pyelonephritis caused by Bifidobacterium breve in an elderly woman: a case report and literature review.	Nishio M, Morioka H, Takai S, Osada Y, Seki Y, Osugi T, Oba A, Miyaki Y.	Access Microbiol	10.1099/acmi.0.000574.v3	2023
Genetics	Shotgun metagenomics of the vaginal microbiome in cervical shortening and preterm birth risk.	Lee KY, Shin SH, Park G, Kang SH, Kang HJ, Kim J, Lee JJ, Son GH, Hong JY.	Sci Rep	10.1038/s41598-025-23737-x	2025
	Pre-sleep casein ingestion with probiotic strains improves anaerobic power and lower-body-specific strength and power performance in soccer players.	Sadeghi R, Hemmatinafar M, Eftekhari F, Imanian B, Koureshfard N.	J Int Soc Sports Nutr	10.1080/15502783.2025.2505184	2025
Metabolism	In Vitro Stability and Pharmacokinetic Study of Pedunculoside and Its Beta-CD Polymer Inclusion Complex.	Wu L, Li D, Wang P, Dong L, Zhang W, Xu J, Jin X.	Pharmaceutics	10.3390/pharmaceutics16050591	2024
	A Mini Literature Review of Probiotics: Transforming Gastrointestinal Health Through Evidence-Based Insights.	Mohammed C, Fuego JP, Garcia KV, Jamil H, Rajesh RY, Escobar AS, Hassan MJ, Rai M.	Cureus	10.7759/cureus.57055	2024
	Factors Influencing the Colostrum's Microbiota: A Systematic Review of the Literature.	Tzani A, Xixi NA, Sokou R, Karapati E, Iliodromiti Z, Volaki P, Paliatsiou S, Iacovidou N, Boutsikou T.	Children (Basel)	10.3390/children12101336	2025
Phylogeny	Evaluation of the therapeutic effect and dose-effect of Bifidobacterium breve on the primary Clostridioides difficile infected mice.	Yang J, Yang H.	Appl Microbiol Biotechnol	10.1007/s00253-021-11668-2	2021
	Bifidobacterium breve during infancy attenuates mobility in low birthweight rats.	Itoh A, Tanaka N, Fukunaga S, Nakano-Doi A, Matsuyama T, Nakagomi T, Tsuji M.	Pediatr Int	10.1111/ped.15209	2022
	A novel synbiotic formulation prevents calcium oxalate stones by restoring gut microbiota homeostasis.	Li XM, Amier Y, Wan WL, Wang YQ, Lyu GR, Lu JL, Rao JY, Yang YY, Xun Y, Yu X.	BMC Microbiol	10.1186/s12866-025-04408-3	2025
	A case of necrotizing fasciitis caused by Bifidobacterium breve.	Takeda Y, Ota K, Kondo A, Nishii T, Onishi N, Yokoyama H, Yamakawa K, Takasu A.	IDCases	10.1016/j.idcr.2022.e01667	2023
	Clinical and Bacteriologic Characteristics of Six Cases of Bifidobacterium breve Bacteremia Due to Probiotic Administration in the Neonatal Intensive Care Unit.	Sakurai Y, Watanabe T, Miura Y, Uchida T, Suda N, Yoshida M, Nawa T.	Pediatr Infect Dis J	10.1097/inf.0000000000003232	2022
	Modulation of Gut Microbiota Using VSL#3 and Its Impact on Aortic Parameters in a Rat Model.	Altun M, Kucuk U, Yildirim N.	Anatol J Cardiol	10.14744/anatoljcardiol.2025.5048	2025
	The role of microbiota modulation in preventing Alzheimer's disease- a review.	Strzepa A, Szczepanik M.	Pharmacol Rep	10.1007/s43440-025-00796-5	2025
	A young child formula supplemented with a synbiotic mixture of scGOS/lcFOS and Bifidobacterium breve M-16V improves the gut microbiota and iron status in healthy toddlers.	Chew C, Matsuyama M, Davies PSW, Hill RJ, Morrison M, Martin R, Codoner FM, Knol J, Roeselers G.	Front Pediatr	10.3389/fped.2024.1193027	2024
	Effects of extraction methods on the digestibility, cytotoxicity, prebiotic potential and immunomodulatory activity of taro (Colocasia esculenta) water-soluble non-starch polysaccharide	Anwar M, Mros S, McConnell M, Bekhit AEDA.	Food hydrocolloids.		2022
Metabolism	Characteristic metabolite profile of 10 colorectal cancer-related bacteria.	Liu Y, Mei W, Huang X, Yao X, Kong C, Chen Y.	Front Oncol	10.3389/fonc.2025.1604876	2025
	Probiotics in the Prophylaxis of Premature Rupture of Membranes and Cervical Incompetence.	Vaduva CC, Petrescu AM, Dira LM, Ruican D, Pana RC.	Nutrients	10.3390/nu16234230	2024
	Efficacy of Probiotic Supplements and Topical Applications in the Treatment of Acne: A Scoping Review of Current Results.	Sutema IAMP, Latarissa IR, Widowati IGAR, Sartika CR, Ciptasari NWE, Lestari K.	J Exp Pharmacol	10.2147/jep.s498769	2025
	Rewiring Mood: Precision Psychobiotics as Adjunct or Stand-Alone Therapy in Depression Using Insights from 19 Randomized Controlled Trials in Adults.	Menni AE, Theodorou H, Tzikos G, Theodorou IM, Semertzidou E, Stelmach V, Shrewsbury AD, Stavrou G, Kotzampassi K.	Nutrients	10.3390/nu17122022	2025
	Infant Formulas With Postbiotics: An Updated Systematic Review.	Szajewska H, Kolodziej M, Skorka A, Piescik-Lech M.	J Pediatr Gastroenterol Nutr	10.1097/mpg.0000000000003441	2022
	Modulation of Bifidobacterium by HD5 during weaning is associated with high abundance in later life.	Shimizu Y, Yokoi Y, Ohira S, Izumi H, Kawakami S, Ihara M, Tabata F, Takeda Y, Kimura T, Nakamura K, Tamakoshi A, Ayabe T, Nakamura K.	Commun Med (Lond)	10.1038/s43856-025-00977-6	2025
Genetics	Genomic insights into the beneficial potential of Bifidobacterium and Enterococcus strains isolated from Cameroonian infants.	Kaktcham PM, Kujawska M, Kouam EMF, Piame LT, Tientcheu MLT, Mueller J, Felsl A, Truppel BA, Ngoufack FZ, Hall LJ.	Microb Genom	10.1099/mgen.0.001354	2025
	Gut microbiota of preterm infants in the neonatal intensive care unit: a study from a tertiary care center in northern India.	Devarajalu P, Kumar J, Dutta S, Attri SV, Kabeerdoss J.	Front Microbiol	10.3389/fmicb.2024.1329926	2024
	New insights into the cultivability of human milk bacteria from ingestion to digestion and implications for their Immunomodulatory properties.	Le Bras C, Mouchard A, Rault L, Cochet MF, Menard O, Jacquet N, Chuat V, Valence F, Le Loir Y, Bellanger A, Deglaire A, Le Huerou-Luron I, Even S.	Sci Rep	10.1038/s41598-025-95668-6	2025
	Refining Unfavorable Vaginal Microbial Community in Infertile Women Subjected to Precision Probiotic Intervention: An Exploratory Single-Arm, Prospective, Open-Label, Interventional Study.	Cocomazzi G, Contu V, De Stefani S, Del Pup L, Buccheri M, Antinori M, Parmegiani L, De Ruvo D, Marino F, Virgili E, Allen C, Palini S, Ciampaglia W, Cerboneschi M, Baldini D, Baldini GM, Pazienza V.	Microorganisms	10.3390/microorganisms13030547	2025
	Acute Liver Failure Induced by Menopausal Supplement.	Patel R, Hassan A, Scanlan H, Everwine M, Ren Z, Snyder C, ElGenaidi H.	ACG Case Rep J	10.14309/crj.0000000000001509	2024
Pathogenicity	The Anti-Inflammatory, Immunomodulatory, and Pro-Autophagy Activities of Probiotics for Colorectal Cancer Prevention and Treatment: A Narrative Review.	Garavaglia B, Vallino L, Ferraresi A, Visciglia A, Amoruso A, Pane M, Munteanu C, Isidoro C.	Biomedicines	10.3390/biomedicines13071554	2025
	Evaluation of treatment in acute gastroenteritis: A comparative study.	Yalcin G, Demirbas F, Bacalan F, Toy EB.	J Pak Med Assoc	10.47391/jpma.4438	2022
	Untargeted metabolomic analysis uncovers metabolic variability of four Bifidobacterial strains for probiotic development.	Liu K, Yao G, Yang Z, Huang T, Kwok LY, Zhang H.	Front Microbiol	10.3389/fmicb.2025.1522036	2025
	Preventive effect of probiotics on oral mucositis induced by anticancer therapy: a systematic review and meta-analysis of randomized controlled trials.	Yang B, Li W, Shi J.	BMC Oral Health	10.1186/s12903-024-04955-7	2024
	Effectiveness of Psychobiotic Bifidobacterium breve BB05 in Managing Psychosomatic Diarrhea in College Students by Regulating Gut Microbiota: A Randomized, Double-Blind, Placebo-Controlled Trial.	Wang Y, Wang Y, Ding K, Liu Y, Liu D, Chen W, Zhang X, Luo C, Zhang H, Xu T, Chen T.	Nutrients	10.3390/nu16131989	2024
	Gut microbiota of sub-Saharan Africa infants exposed to antiretroviral therapy: Scoping review.	Mudhluli TE, Mashingaidze-Mano R, Chitsike I, Manasa J, Hall LJ, Gomo E, Zhou DT.	Afr J Prim Health Care Fam Med	10.4102/phcfm.v17i1.4939	2025
	Probiotic Mixture Ameliorates a Diet-Induced MASLD/MASH Murine Model through the Regulation of Hepatic Lipid Metabolism and the Gut Microbiome.	Zhang F, Lo EKK, Chen J, Wang K, Felicianna, Ismaiah MJ, Leung HKM, Zhao D, Lee JC, El-Nezami H.	J Agric Food Chem	10.1021/acs.jafc.3c08910	2024
	Effects of probiotics, prebiotics, and synbiotics on gut microbiota in older adults: a systematic review and meta-analysis of randomized controlled trials.	Zhuang K, Luo H, Zeng M, Chan SCL, Gong M, Wang Y.	Nutr J	10.1186/s12937-025-01218-1	2025
	Effects of Bifidobacterium longum BB536 and Bifidobacterium breve MCC1274 on Body Composition in Normal and Overweight Adults in Randomized Placebo-Controlled Study.	Sato S, Arai S, Kato K, Yoshida K, Iwabuchi N, Sagami T, Tanaka M.	Nutrients	10.3390/nu16060815	2024
Metabolism	Difference in the adhesion of Bifidobacterium breve to lotus seed resistant starch is attributable to its structural performance conferred by the preparation method.	Huang Y, Yang S, Huang Z, Yuan Y, Miao S, Zhang Y, Zeng H, Zheng B, Deng K.	Int J Biol Macromol	10.1016/j.ijbiomac.2021.11.210	2022
	Characterization of the Gut Microbiota in Patients with Psoriasis: A Systematic Review.	Gao Y, Lou Y, Hui Y, Chen H, Sang H, Liu F.	Pathogens	10.3390/pathogens14040358	2025
	Evaluation of Safety and Beneficial Health Effects of the Human-Milk Strain Bifidobacterium breve DSM32583: An Infant Pilot Trial.	Alba C, Carrera M, Alvarez-Calatayud G, Arroyo R, Fernandez L, Rodriguez JM.	Nutrients	10.3390/nu16081134	2024
	Long-Term Breastfeeding: Protective Effects Against Triple-Negative Breast Cancer and the Role of the Breast Microbiota.	Sierra-Roca J, Climent J.	Pathogens	10.3390/pathogens14090946	2025
Genetics	Draft genomes of 12 Bifidobacterium isolates from human IBD fecal samples.	Souza CE, Jacobson NE, An MA, Droit L, Vega AA, Rosales M, Mihindukulasuriya KA, Pastrana K, Handley SA, Parkes M, Rimmer J, Wang D, Dinsdale EA, A Edwards R, Segall AM.	Microbiol Resour Announc	10.1128/mra.00130-23	2024
	Bifidobacterium breve CCFM1025 Improves Sleep Quality via Regulating the Activity of the HPA Axis: A Randomized Clinical Trial.	Lan Y, Lu J, Qiao G, Mao X, Zhao J, Wang G, Tian P, Chen W.	Nutrients	10.3390/nu15214700	2023
	Evaluation of skin cancer prevention properties of probiotics.	Torabi S, Nahidi Y, Ghasemi SZ, Reihani A, Samadi A, Ramezanghorbani N, Nazari E, Davoudi S.	Genes Nutr	10.1186/s12263-025-00770-z	2025
	Microbiota-Gut-Brain Axis Dysregulation in Alzheimer's Disease: Multi-Pathway Effects and Therapeutic Potential.	Qu L, Li Y, Liu F, Fang Y, He J, Ma J, Xu T, Wang L, Lei P, Dong H, Jin L, Yang Q, Wu W, Sun D.	Aging Dis	10.14336/ad.2023.0823-2	2024
	Role of Lacticaseibacillus rhamnosus GG in the Management of Respiratory Diseases: A Systematic Review and Meta-Analysis	Zuhair M, Wiriansya E, Masyhuri I, Fakhri M, Hatta M, Djaharuddin I, Bukhari A.	Prev Nutr Food Sci		2025
	Profiling of vaginal microbial communities in Chilean women via self-sampling and nanopore sequencing.	Oliva-Arancibia B, Villanueva P, Ugalde JA.	Sci Rep	10.1038/s41598-025-23837-8	2025
	A Randomized Double-Blind Placebo-Controlled Study on the Safety and Efficacy of Probiotics for Insulin Resistance and Oxidative Stress Markers in Diabetic Patients With End-Stage Renal Disease on Hemodialysis.	Pingali U, Kalidindi RK, Mekala P, Khan I.	Cureus	10.7759/cureus.74621	2024
	Monensin phase-out in Norwegian turkey production decreases Bifidobacterium spp. abundance while enhancing microbial diversity.	Kaspersen HP, Estensmo EL, Slettemeas JS, Haverkamp THA, Sjurseth SK, Granstad S, Sekse C, Frederiksen RF, Urdahl AM.	Microb Genom	10.1099/mgen.0.001466	2025
Phylogeny	Gut Microbiota Alteration in Healthy Preterm Infants: An Observational Study from Tertiary Care Center in India.	Devarajalu P, Kumar J, Dutta S, Attri SV, Kabeerdoss J.	Microorganisms	10.3390/microorganisms13030577	2025
	Beneficial Effects of Limosilactobacillus reuteri PBS072 and Bifidobacterium breve BB077 on Mood Imbalance, Self-Confidence, and Breastfeeding in Women during the First Trimester Postpartum.	Vicariotto F, Malfa P, Torricelli M, Lungaro L, Caio G, De Leo V.	Nutrients	10.3390/nu15163513	2023
	Potential Therapeutic Effects of Bifidobacterium breve MCC1274 on Alzheimer's Disease Pathologies in App^NL-G-F Mice.	Abdelhamid M, Jung CG, Zhou C, Inoue R, Chen Y, Sento Y, Hida H, Michikawa M.	Nutrients	10.3390/nu16040538	2024
	In Vitro Infant Fecal Fermentation Characteristics of Human Milk Oligosaccharides Were Controlled by Initial Microbiota Composition More than Chemical Structure.	Xu S, Lane JA, Chen J, Zheng Y, Wang H, Fu X, Huang Q, Dhital S, Liu F, Zhang B.	Mol Nutr Food Res	10.1002/mnfr.202200098	2022
	Succession of the multi-site microbiome along pancreatic ductal adenocarcinoma tumorigenesis.	Zhu Y, Liang X, Zhi M, Li L, Zhang G, Chen C, Wang L, Wang P, Zhong N, Feng Q, Li Z.	Front Immunol	10.3389/fimmu.2024.1487242	2024
	[Methods of gut microbiota correction for treatment and prevention of food allergy: a review of current research].	Fedotova MM, Prokopyeva VD, Dochkin VA, Boguta VD, Fedorova OS.	Vopr Pitan	10.33029/0042-8833-2022-91-5-16-28	2022
	The Impact of Microbiome Interventions on the Progression and Severity of Inflammatory Bowel Disease: A Systematic Review.	Kasapoglu M, Yadavalli R, Nawaz S, Althwanay A, AlEdani EM, Kaur H, Butt S.	Cureus	10.7759/cureus.60786	2024
	In silico homology modeling, docking and sequence analysis of some bacterial laccases to unravel enzymatic specificity towards lignin biodegradation.	Mahuri M, Paul M, Sahu SK, Thatoi H, Thatoi H.	J Biomol Struct Dyn	10.1080/07391102.2022.2096117	2023
	Efficacy of bifidobacterium-related preparations on depression: the first meta-analysis.	Huang R, Liu Y.	Front Psychiatry	10.3389/fpsyt.2024.1463848	2024
	Tumor-suppressing multi-enterobacteria and PD-1/PD-L1 immune checkpoint inhibitor combination improves the outcome of hepatocellular carcinoma therapy	Wu D, Fan Y, Zhang M, Wang X, He X, Guo X, Liu Y, Cao C, Deng Z.	Front Immunol		2025
	The Effect of Probiotics on Health in Pregnancy and Infants: A Randomized, Double-Blind, Placebo-Controlled Trial.	Binda S, Chow-Shi-Yee M, El Salti S, Auclair-Ouellet N, Oula ML, Carton T, Leuillet S, Tomassi D, Hemmings R, Kadoch IJ.	Nutrients	10.3390/nu17111825	2025
Metabolism	Maternal gut Bifidobacterium breve modifies fetal brain metabolism in germ-free mice.	Lopez-Tello J, Kiu R, Schofield Z, Zhang CXW, van Sinderen D, Le Gall G, Hall LJ, Sferruzzi-Perri AN.	Mol Metab	10.1016/j.molmet.2024.102004	2024
Genetics	Strain-level variation among vaginal Lactobacillus crispatus and Lactobacillus iners as identified by comparative metagenomics.	Nori SRC, Walsh CJ, McAuliffe FM, Moore RL, Van Sinderen D, Feehily C, Cotter PD.	NPJ Biofilms Microbiomes	10.1038/s41522-025-00682-1	2025
	Bifidobacterium deficit in United States infants drives prevalent gut dysbiosis.	Jarman JB, Torres PJ, Stromberg S, Sato H, Stack C, Ladrillono A, Pace S, Jimenez NL, Haselbeck RJ, Insel R, Van Dien S, Culler SJ.	Commun Biol	10.1038/s42003-025-08274-7	2025
Pathogenicity	Supplementation with postbiotic from Bifidobacterium Breve BB091109 improves inflammatory status and endocrine function in healthy females: a randomized, double-blind, placebo-controlled, parallel-groups study.	Motei DE, Beteri B, Hepsomali P, Tzortzis G, Vulevic J, Costabile A.	Front Microbiol	10.3389/fmicb.2023.1273861	2023
	Probiotic modulation of central and peripheral sensitization in a migraine model via the gut-brain-trigeminal axis.	Suthivanich P, Vongseenin S, Auvichayapat V, Supronsinchai W, Tumwasorn S, Chayanupatkul M, Bongsebandhu-Phubhakdi S.	Sci Rep	10.1038/s41598-025-24928-2	2025
	Gut Bifidobacterium responses to probiotic Lactobacillus casei Zhang administration vary between subjects from different geographic regions.	Zhao F, Bai X, Zhang J, Kwok LY, Shen L, Jin H, Sun T, Sun Z, Zhang H.	Appl Microbiol Biotechnol	10.1007/s00253-022-11868-4	2022
	A novel infant microbiome formula (SIM03) improved eczema severity and quality of life in preschool children.	Chan OM, Xu W, Cheng NS, Leung ASY, Ching JYL, Fong BLY, Cheong PK, Zhang L, Chan FKL, Ng SC, Leung TF.	Sci Rep	10.1038/s41598-024-53848-w	2024
	Comparative Analysis of Fucosyllactose-Induced Changes in Adult Gut Microbiota and Short-Chain Fatty Acid Production Using the Simulator of Human Intestinal Microbial Ecosystem Model.	Sato Y, Kanayama M, Nakajima S, Komatsu Y, Kokubo T.	Prev Nutr Food Sci	10.3746/pnf.2025.30.4.331	2025
	Gut infection and dysbiosis are hallmarks of severe SARS-CoV-2 variants.	Nagaraj SK, Joy CM, Shiraz R, Narayan R, Kaur S, Khatun O, Dubey S, Ng J, Mishra N, Tripathi S.	Npj Viruses	10.1038/s44298-025-00158-1	2025
	Various Organ Damages in Rats with Fetal Growth Restriction and Their Slight Attenuation by Bifidobacterium breve Supplementation.	Tsuji M, Tanaka N, Koike H, Sato Y, Shimoyama Y, Itoh A.	Life (Basel)	10.3390/life13102005	2023
	Green synthesis of isomaltulose from cane molasses by an immobilized recombinant Escherichia coli strain and its prebiotic activity	Su HH, Xu RY, Yang ZD, Guo YS, Gao JY, Mo LZ, Gao YF, Cheng H, Zhang PJ, Huang JS.	Lebensm Wiss Technol		2022
	The Role of Gut Microbiota in Pediatric Obesity and Metabolic Disorders: Insights from a Comprehensive Review.	Koller AM, Sasaran MO, Marginean CO.	Nutrients	10.3390/nu17111883	2025
	Evaluating the Effectiveness of Probiotic Supplementation in Combination With Doxycycline for the Treatment of Moderate Acne: A Randomized Double-Blind Controlled Clinical Trial.	Atefi N, Mohammadi M, Bodaghabadi M, Mehrali M, Behrangi E, Ghassemi M, Jafarzadeh A, Goodarzi A.	J Cosmet Dermatol	10.1111/jocd.16614	2025
	Analysis of Gut Bacterial and Fungal Microbiota in Children with Autism Spectrum Disorder and Their Non-Autistic Siblings.	Retuerto M, Al-Shakhshir H, Herrada J, McCormick TS, Ghannoum MA.	Nutrients	10.3390/nu16173004	2024
Pathogenicity	Probiotic Bifidobacterium breve MCC1274 Protects against Oxidative Stress and Neuronal Lipid Droplet Formation via PLIN4 Gene Regulation.	Bernier F, Kuhara T, Xiao J.	Microorganisms	10.3390/microorganisms11030791	2023
	Linoleic acid induces different metabolic modes in two Bifidobacterium breve strains with different conjugated linoleic acid-producing abilities	Gao H, Yang B, Stanton C, Ross RP, Zhang H, Chen H, Chen W.	Lebensm Wiss Technol	10.1016/j.lwt.2021.110974	2021
	In vitro validation studies for adhesion factor and adhesion efficiency of probiotic Bacillus licheniformis MCC 2514 and Bifidobacterium breve NCIM 5671 on HT-29 cell lines.	Rohith HS, Halami PM.	Arch Microbiol	10.1007/s00203-021-02257-y	2021
	The association between prenatal exposure and childhood asthma: the mediating role of gut microbiota.	Ning Z, Zhang Y, Lu R, Zhao A, Wang Z, Yuan J, Li S.	Front Microbiol	10.3389/fmicb.2025.1664708	2025
	Protective Effects of Bifidobacterium Breve MCC1274 as a Novel Therapy for Alzheimer's Disease.	Abdelhamid M, Counts SE, Zhou C, Hida H, Kim JI, Michikawa M, Jung CG.	Nutrients	10.3390/nu17030558	2025
	Probiotics as Potential Treatments for Neurodegenerative Diseases: a Review of the Evidence from in vivo to Clinical Trial.	Kim JH, Choi Y, Lee S, Oh MS.	Biomol Ther (Seoul)	10.4062/biomolther.2024.215	2025
	Gut microbiome is associated with asthma and race in children with food allergy.	Mahdavinia M, Fyolek JP, Jiang J, Thivalapill N, Bilaver LA, Warren C, Fox S, Nimmagadda SR, Newmark PJ, Sharma H, Assa'ad A, Seed PC, Gupta RS.	J Allergy Clin Immunol	10.1016/j.jaci.2023.07.024	2023
	The Effect of High-Intensity Interval Training and Mixed Probiotic Supplementation on SMOC-1 Gene Expression, Insulin Resistance, and Blood Glucose in Male Rats With Induced Diabetes.	Ghazvineh D, Dodangeh M, Razmjou S, Rahimi A, Masouleh MA.	J Diabetes Res	10.1155/jdr/5518066	2025
	Perinatal transmission of a probiotic Bifidobacterium strain protects against early life stress-induced mood and gastrointestinal motility disorders.	Zhu H, Tian P, Qian X, Gu L, Zhao J, Wang G, Chen W, Chen W.	Food Funct	10.1039/d2fo01164f	2022
	Probiotics as technological innovations in psychiatric disorders: patents and research reviews.	de Lima AA, Santos SS, de Araujo MA, Vinderola G, Villarreal CF, Viana MDM.	Front Nutr	10.3389/fnut.2025.1567097	2025
	Investigating the causal role of gut microbiota in zoster infection and its complications: A bidirectional Mendelian randomization study.	Zhu C, Zhu L, Xiao T, Qu S.	Medicine (Baltimore)	10.1097/md.0000000000044355	2025
	Observation of SAM-VI Riboswitch Dynamics Using Single-Molecule FRET.	Xue Y, Sun Y, Xia Y, Liu X, Dai H.	Biomolecules	10.3390/biom15060841	2025
Genetics	A highly accurate nanopore-based sequencing workflow for culture and PCR-free microbial metagenomic profiling of urogenital samples.	Ferneyhough B, Roddis M, Millington S, Quirk J, Clements C, West S, Schilizzi R, Fischer MD, Parkinson NJ.	BMC Urol	10.1186/s12894-025-01723-9	2025
	Synbiotics as Treatment for Irritable Bowel Syndrome: A Review.	Sommermeyer H, Piatek J.	Microorganisms	10.3390/microorganisms12071493	2024
	Bifidobacterium breve CCFM1025 attenuates major depression disorder via regulating gut microbiome and tryptophan metabolism: A randomized clinical trial.	Tian P, Chen Y, Zhu H, Wang L, Qian X, Zou R, Zhao J, Zhang H, Qian L, Wang Q, Wang G, Chen W.	Brain Behav Immun	10.1016/j.bbi.2021.11.023	2022
	Gut-Immune Interplay: Decoding the Microbiome's Impact on Immunity and Diseases.	Khazi AI, Ahmad A.	J Pharm Bioallied Sci	10.4103/jpbs.jpbs_1377_25	2025
	In-depth Microbiological Characterization of Urine From Subjects With Type 2 Diabetes.	Calvigioni M, Biancalana E, Mazzantini D, Celandroni F, Rossi C, Mengozzi A, Ghelardi E, Solini A.	J Clin Endocrinol Metab	10.1210/clinem/dgae389	2024
	The effect of probiotics and casein supplementation on aerobic capacity parameters of male soccer players.	Imanian B, Hemmatinafar M, Daryanoosh F, Koureshfard N, Sadeghi R, Niknam A, Rezaei R, Qashqaei A.	J Int Soc Sports Nutr	10.1080/15502783.2024.2382165	2024
	The diversity and composition of the human gut lactic acid bacteria and bifidobacterial microbiota vary depending on age.	Ma T, Yao C, Shen X, Jin H, Guo Z, Zhai Q, Yu-Kwok L, Zhang H, Sun Z.	Appl Microbiol Biotechnol	10.1007/s00253-021-11625-z	2021
	Can We Modulate Our Second Brain and Its Metabolites to Change Our Mood? A Systematic Review on Efficacy, Mechanisms, and Future Directions of "Psychobiotics".	Garzone S, Charitos IA, Mandorino M, Maggiore ME, Capozzi L, Cakani B, Dias Lopes GC, Bocchio-Chiavetto L, Colella M.	Int J Mol Sci	10.3390/ijms26051972	2025
	Protective effect of Bifidobacterium bifidum FSDJN7O5 and Bifidobacterium breve FHNFQ23M3 on diarrhea caused by enterotoxigenic Escherichia coli.	Yang B, Huang Z, He Z, Yue Y, Zhou Y, Ross RP, Stanton C, Zhang H, Zhao J, Chen W.	Food Funct	10.1039/d1fo00504a	2021
	A partially hydrolyzed formula with synbiotics supports adequate growth and is well tolerated in healthy, Chinese term infants: A double-blind, randomized controlled trial.	Wang Y, Li Z, Wu JL, Zhang L, Liu M, Tan M, Botma A, Liu M, Mulder KA, Abrahamse-Berkeveld M, Cai W.	Nutrition	10.1016/j.nut.2021.111472	2021
	Microbiome-Aging-Wrinkles Axis of Skin: Molecular Insights and Microbial Interventions.	Challa V, Prajapati SK, Gangani S, Yadav D, Lekkala L, Jain S, Yadav H.	Int J Mol Sci	10.3390/ijms262010022	2025
Genetics	Harnessing the endogenous Type I-C CRISPR-Cas system for genome editing in Bifidobacterium breve.	Han X, Chang L, Chen H, Zhao J, Tian F, Ross RP, Stanton C, van Sinderen D, Chen W, Yang B.	Appl Environ Microbiol	10.1128/aem.02074-23	2024
	Can probiotics stop oral cancer progression?	Kumar SS.	Evid Based Dent	10.1038/s41432-022-0246-y	2022
	Psychobiotics in Depression: Sources, Metabolites, and Treatment-A Systematic Review.	Sliwka A, Polak-Berecka M, Zdybel K, Zelek-Molik A, Wasko A.	Nutrients	10.3390/nu17132139	2025
	Efficacy of Lactobacillus and Bifidobacterium in Allergic Rhinitis: A Narrative Review	Mishra T, Sasanka K, TY S, Bano G, Panda S, Raj M, Mondal H, Sarangi P.	Cureus
	Bifidobacterium bifidum FB3-12 attenuates ovalbumin-induced allergic diseases by enhancing intestinal barrier function and regulating gut microbiota.	Kou R, Li A, Yu M, Wang J, Hu Y, Zhang B, Liu J, Wang S.	NPJ Sci Food	10.1038/s41538-025-00590-w	2025
Phenotype	Gene-trait matching analysis reveals putative genes involved in Bifidobacterium spp. biofilm formation.	Liu Z, Li H, Li L, Ma Q, Fang Z, Wang H, Lee Y, Zhao J, Zhang H, Chen W, Lu W.	Gene	10.1016/j.gene.2022.146449	2022
	Gut Microbiota Dysbiosis in Preeclampsia: Mechanisms, Biomarkers, and Probiotic-Based Interventions.	Zhao Y, Wang B, Wei X, Liu D, Wang R, Ma H, Qiao Z, Kong N, Feng J, Cui D, Hou S, Zhang H.	Mediators Inflamm	10.1155/mi/3010379	2025
	The impact of pre-, pro- and synbiotics supplementation in colorectal cancer treatment: a systematic review.	Moreira MM, Carrico M, Capelas ML, Pimenta N, Santos T, Ganhao-Arranhado S, Makitie A, Ravasco P.	Front Oncol	10.3389/fonc.2024.1395966	2024
	Supplementation with Bifidobacterium breve BR03 and B632 strains improved insulin sensitivity in children and adolescents with obesity in a cross-over, randomized double-blind placebo-controlled trial.	Solito A, Bozzi Cionci N, Calgaro M, Caputo M, Vannini L, Hasballa I, Archero F, Giglione E, Ricotti R, Walker GE, Petri A, Agosti E, Bellomo G, Aimaretti G, Bona G, Bellone S, Amoruso A, Pane M, Di Gioia D, Vitulo N, Prodam F.	Clin Nutr	10.1016/j.clnu.2021.06.002	2021
	Transcriptional landscape of the pMP7017 megaplasmid and its impact on the Bifidobacterium breve UCC2003 transcriptome.	Dineen RL, Bottacini F, O'Connell-Motherway M, van Sinderen D.	Microb Biotechnol	10.1111/1751-7915.14405	2024
	Footprint of Domestic Processing on Safety and Functional Properties of Italian Black Garlic	Addazii D, Cevoli C, Casciano F, Ferioli F, Gallina Toschi T, Gianotti A, Nissen L.	Foods		2025
	Heat-sterilized Bifidobacterium breve prevents depression-like behavior and interleukin-1beta expression in mice exposed to chronic social defeat stress.	Kosuge A, Kunisawa K, Arai S, Sugawara Y, Shinohara K, Iida T, Wulaer B, Kawai T, Fujigaki H, Yamamoto Y, Saito K, Nabeshima T, Mouri A.	Brain Behav Immun	10.1016/j.bbi.2021.05.028	2021
Phylogeny	Effects of fructooligosaccharides (FOS) on the composition of cecal and fecal microbiota and the quantitative detection of FOS-metabolizing bacteria using species-specific primers.	Gu J, Cui S, Tang X, Liu Z, Zhao J, Zhang H, Mao B, Chen W.	J Sci Food Agric	10.1002/jsfa.11884	2022
	Probiotic Supplementation Enhances the Effects of a Nutritional Intervention on Quality of Life in Women with Hashimoto's Thyroiditis-A Double-Blind Randomised Study.	Osowiecka K, Skrypnik D, Myszkowska-Ryciak J.	Nutrients	10.3390/nu17213387	2025
	Development of multi-strain probiotic cheese: Nisin production in food and gut	Langa S, Peiroten A, Gaya P, Escudero C, Rodriguez-Minguez E, Landete JM, Arques JL.	Lebensm Wiss Technol		2021
	Impact of probiotics on sleep quality and mood states in patients with insomnia: a systematic review and meta-analysis.	Liu Y, Yu Y, Lu S, Tan K, Jiang P, Liu P, Peng Q.	Front Microbiol	10.3389/fmicb.2025.1596990	2025
	Deciphering the Diversity in Bacterial Transporters That Salvage Queuosine Precursors.	Quaiyum S, Yuan Y, Kuipers PJ, Martinelli M, Jaroch M, de Crecy-Lagard V.	Epigenomes	10.3390/epigenomes8020016	2024
	Microencapsulation of Lactobacillus reuteri by Emulsion Technique and Evaluation of Microparticle Properties and Bacterial Viability Under Storage, Processing, and Digestive System Conditions.	Teymoori F, Roshanak S, Bolourian S, Mozafarpour R, Shahidi F.	Food Sci Nutr	10.1002/fsn3.4533	2024
	Early Inoculation of a Multi-Species Probiotic in Piglets-Impacts on the Gut Microbiome and Immune Responses.	Hansen LHB, Lauridsen C, Nielsen B, Jorgensen L, Schonherz A, Canibe N.	Microorganisms	10.3390/microorganisms13061292	2025
Genetics	Unraveling the Microbial Mechanisms Underlying the Psychobiotic Potential of a Bifidobacterium breve Strain.	Tian P, Bastiaanssen TFS, Song L, Jiang B, Zhang X, Zhao J, Zhang H, Chen W, Chen W, Cryan JF, Wang G.	Mol Nutr Food Res	10.1002/mnfr.202000704	2021
	Teenagers with Obesity at the Gym: Recommendations for Physical Activity, Diet, and Supplementation-A Narrative Review.	Koziol-Kozakowska A, Wojcik M, Mazur-Kurach P, Drozdz D, Brzek A.	Nutrients	10.3390/nu17111798	2025
	Probiotics in the management of radiation-induced oral mucositis.	Li Y, Li Z, Zheng S, Xu X.	Front Cell Infect Microbiol	10.3389/fcimb.2024.1477143	2024
	Targeting gut microbiota as a therapeutic approach for neurodegenerative diseases.	Olajide TS, Ijomone OM.	Neuroprotection	10.1002/nep3.70000	2025
	Unveiling the mycobiota: The fungal frontier of human health.	Iyer P, Ojcius DM.	Biomed J	10.1016/j.bj.2024.100751	2024
	Exploring the Fecal Metabolome in Infants With Cow's Milk Allergy: The Distinct Impacts of Cow's Milk Protein Tolerance Acquisition and of Synbiotic Supplementation.	Zhu P, Savova MV, Kindt A, PRESTO study team, Wopereis H, Belzer C, Harms AC, Hankemeier T.	Mol Nutr Food Res	10.1002/mnfr.202400583	2025
	The effects of probiotic supplementation and exercise training on liver enzymes and cardiometabolic markers in patients with non-alcoholic fatty liver disease: a systematic review and meta-analysis of randomized clinical trials.	Kazeminasab F, Miraghajani M, Mokhtari K, Karimi B, Rosenkranz SK, Santos HO.	Nutr Metab (Lond)	10.1186/s12986-024-00826-8	2024
Genetics	Genomic and ecological approaches to identify the Bifidobacterium breve prototype of the healthy human gut microbiota.	Argentini C, Lugli GA, Tarracchini C, Fontana F, Mancabelli L, Viappiani A, Anzalone R, Angelini L, Alessandri G, Longhi G, Bianchi MG, Taurino G, Bussolati O, Milani C, van Sinderen D, Turroni F, Ventura M.	Front Microbiol	10.3389/fmicb.2024.1349391	2024
	Research status and development trends of probiotics in clinical applications.	Li Y, Yao Y, Zhang Z, Gan Y.	Front Nutr	10.3389/fnut.2025.1650883	2025
Pathogenicity	Effect of Probiotic Supplementation in Preventing Necrotizing Enterocolitis Sepsis and Mortality Among Preterm and Very Low Birth Weight Infants: A Systematic Review and Meta-Analysis.	Kalantar HT, Galadari S, Kalantar AT, Alali M, Alali N, Ali M, Naji H.	Cureus	10.7759/cureus.94762	2025
	High-Fat Diet-Induced Obesity Increases Brain Mitochondrial Complex I and Lipoxidation-Derived Protein Damage.	Berdun R, Obis E, Mota-Martorell N, Bassols A, Valent D, Serrano JCE, Martin-Gari M, Rodriguez-Palmero M, Moreno-Munoz JA, Tibau J, Quintanilla R, Pamplona R, Portero-Otin M, Jove M.	Antioxidants (Basel)	10.3390/antiox13020161	2024
	A Probiotic Amylase Blend Positively Impacts Gut Microbiota Modulation in a Randomized, Placebo-Controlled, Double-Blind Study.	Ghannoum MA, Elshaer M, Al-Shakhshir H, Retuerto M, McCormick TS.	Life (Basel)	10.3390/life14070824	2024
Genetics	Metagenomic Characterisation of the Gut Microbiome and Effect of Complementary Feeding on Bifidobacterium spp. in Australian Infants.	Parkin K, Palmer DJ, Verhasselt V, Amenyogbe N, Cooper MN, Christophersen CT, Prescott SL, Silva D, Martino D.	Microorganisms	10.3390/microorganisms12010228	2024
	Highly efficient CRISPR-Cas9 base editing in Bifidobacterium with bypass of restriction modification systems.	Lin H-C, Hsiao W-C, Hsu Y-C, Lin M-C, Hsu C-C, Zhang MM.	Appl Environ Microbiol	10.1128/aem.01985-24	2025
	Microbiota-Modulating Strategies in Neonates Undergoing Surgery for Congenital Gastrointestinal Conditions: A Narrative Review.	Decembrino N, Scuderi MG, Betta PM, Leonardi R, Bartolone A, Marsiglia R, Marangelo C, Pane S, De Rose DU, Salvatori G, Grosso G, Di Domenico FM, Dotta A, Putignani L, Capolupo I, Di Benedetto V.	Nutrients	10.3390/nu17132234	2025
	The Effect of a Probiotic Complex on the Gut-Brain Axis: A Translational Study.	Nobile V, Giardina S, Puoci F.	Neuropsychobiology	10.1159/000518385	2022
	Coeliac disease and microbiota: is it time for personalised biotics intervention? A scoping review.	Valitutti F, Cavalli E, Leter B, Leonard M, Alessio F, Cucchiara S.	BMJ Nutr Prev Health	10.1136/bmjnph-2024-001100	2025
	Multi-strain Probiotic Formulation Reverses Maternal Separation and Chronic Unpredictable Mild Stress-Generated Anxiety- and Depression-like Phenotypes by Modulating Gut Microbiome-Brain Activity in Rats.	Dandekar MP, Palepu MSK, Satti S, Jaiswal Y, Singh AA, Dash SP, Gajula SNR, Sonti R.	ACS Chem Neurosci	10.1021/acschemneuro.2c00143	2022
	Protective effects of Parabacteroides distasonis against high-fat diet-induced brain injury in mice.	Xie J, Sun Y, Li Q, Nie X, Zhang W, Dong L, Chen X, Nie S.	NPJ Sci Food	10.1038/s41538-025-00591-9	2025
Pathogenicity	Probiotic Supplementation and Inflammatory Status in Coronary Artery Disease: A Systematic Review and Meta-Analysis.	Chiou YY, Chiu TY, Chen MJ.	Microorganisms	10.3390/microorganisms13102303	2025
	Age and aging process alter the gut microbes.	Zhanbo Q, Jing Z, Shugao H, Yinhang W, Jian C, Xiang Y, Feimin Z, Jian L, Xinyue W, Wei W, Shuwen H.	Aging (Albany NY)	10.18632/aging.205728	2024
	Efficacy of Bifidobacterium breve CECT7263 for infantile colic treatment: an open-label, parallel, randomised, controlled trial.	Maldonado-Lobon JA, Blanco-Rojo R, Maldonado J, Ali MA, Almazan MV, Suanes-Cabello A, Callejon E, Jaldo R, Benavides MR, Negrillo AM, Sanudo A, Rodriguez C, Banuelos O, Fonolla J, Olivares M, PROBI-COLIC group.	Benef Microbes	10.3920/bm2020.0105	2021
	Probiotic bacteria vs. yeast for gastrointestinal diseases treatment: Protocol for a systematic review and meta-analysis.	Alsalemi W, Chik Z, Alshawsh MA.	PLoS One	10.1371/journal.pone.0324926	2025
	Weitiao No. 3 (3) enhances the efficacy of anti-programmed cell death protein-1 immunotherapy by modulating the intestinal microbiota in an orthotopic model of gastric cancer mice.	Xiaona H, Yuzhen LI, Chenyang Z, Hengzhou Z, Chenyu J, Xiaodan Z, Chencen Z, Chunhui J.	J Tradit Chin Med	10.19852/j.cnki.jtcm.2024.05.002	2024
Pathogenicity	Bifidobacterium breve M-16V alters the gut microbiota to alleviate OVA-induced food allergy through IL-33/ST2 signal pathway.	Li N, Yu Y, Chen X, Gao S, Zhang Q, Xu C.	J Cell Physiol	10.1002/jcp.29751	2020
	Use of Probiotics for Preventing Necrotizing Enterocolitis in Preterm Infants: A Survey of Current Practices Among Indian Neonatologists.	More K, Hanumantharaju A, Amrit A, Nimbalkar SM, Patole S.	Cureus	10.7759/cureus.73923	2024
	Linoleic Acid Triggered a Metabolomic Stress Condition in Three Species of Bifidobacteria Characterized by Different Conjugated Linoleic Acid-Producing Abilities.	Mei Y, Chen H, Yang B, Zhao J, Zhang H, Chen W.	J Agric Food Chem	10.1021/acs.jafc.1c03752	2021
	Maternal Synbiotic Supplementation with B. breve M-16V and scGOS/lcFOS Shape Offspring Immune Development and Gut Microbiota at the End of Suckling.	Saez-Fuertes L, Kapravelou G, Grases-Pinto B, Bernabeu M, Knipping K, Garssen J, Bourdet-Sicard R, Castell M, Collado MC, Perez-Cano FJ, Rodriguez-Lagunas MJ.	Nutrients	10.3390/nu16121890	2024
	Bifidobacterium breve BBG-001 and intestinal barrier function in preterm babies: Exploratory Studies from the PiPS Trial.	Fleming P, Wilks M, Eaton S, Panton N, Hutchinson R, Akyempon A, Hardy P, Millar MR, Costeloe K.	Pediatr Res	10.1038/s41390-020-01135-5	2021
	Oral administration of Bifidobacterium breve improves anti-angiogenic drugs-derived oral mucosal wound healing impairment via upregulation of interleukin-10.	Li Q, Li Y, Qiao Q, Zhao N, Yang Y, Wang L, Wang Y, Guo C, Guo Y.	Int J Oral Sci	10.1038/s41368-023-00263-y	2023
	Probiotic formulations and gastro-intestinal diseases in the paediatric population: a narrative review.	Siddiqui A, Haider R, Aaqil SI, Vohra LI, Qamar K, Jawed A, Fatima N, Adnan A, Parikh V, Ochani S, Hasibuzzaman MA.	Ann Med Surg (Lond)	10.1097/ms9.0000000000002007	2024
	Evidences and perspectives on the association between gut microbiota and sepsis: A bibliometric analysis from 2003 to 2023.	Hu J, Yao Q, Zhao L.	Heliyon	10.1016/j.heliyon.2024.e37921	2024
	The role of gut microbiota in hypertension-mediated organ damage (HMOD): a systematic review.	Pala B, Frank G, Pennazzi L, Di Renzo L, Gualtieri P, Tocci G, Rubattu S.	J Transl Med	10.1186/s12967-025-07050-9	2025
	Proteomic study of Akkermansia muciniphila and Bifidobacterium species co-culture under different carbon sources.	Sulaiman JE, Zhan Y, Wang S, Lai KL, Li JHW, Yutong DY, Tsim KWK, Cheng KKY, Lai Y, Lam H.	Front Microbiol	10.3389/fmicb.2025.1666747	2025
Pathogenicity	Screening of probiotic candidates in a simulated piglet small intestine in vitro model.	Hansen LHB, Cieplak T, Nielsen B, Zhang Y, Lauridsen C, Canibe N.	FEMS Microbiol Lett	10.1093/femsle/fnab045	2021
	Supercharged NK cells: a unique population of NK cells capable of differentiating stem cells and lysis of MHC class I high differentiated tumors	Kaur K, Chen P, Jewett A.	Cell Death Dis		2025
	Alterations in the gut microbiota of toddlers with cow milk protein allergy treated with a partially hydrolyzed formula containing synbiotics: A nonrandomized controlled interventional study.	Qian M, Liu W, Feng X, Yang Z, Liu X, Ma L, Shan Y, Ran N, Yi M, Wei C, Lu C, Wang Y.	Food Sci Nutr	10.1002/fsn3.3801	2024
	Analysis of Antibiotic Resistance Genes in Water Reservoirs and Related Wastewater from Animal Farms in Central China.	Rui Y, Qiu G.	Microorganisms	10.3390/microorganisms12020396	2024
	Probiotics supplementation in the treatment of male infertility: A Systematic Review.	Oliveira LCSL, Costa EC, Martins FDG, Rocha ASD, Brasil GA.	JBRA Assist Reprod	10.5935/1518-0557.20240013	2024
	Oyster shell based indirect carbonation integrated with probiotic encapsulation.	Shin S, Lee Y, Kim MJ.	Sci Rep	10.1038/s41598-024-72976-x	2024
Pathogenicity	Gut Permeability and Microbiota in Parkinson's Disease: Mechanistic Insights and Experimental Therapeutic Strategies.	Liang Y, Zhao Y, Fasano A, Su CW.	Int J Mol Sci	10.3390/ijms26199593	2025
	Synergistic Inhibition of Candida albicans by Cranberry Proanthocyanidins and Probiotics: Novel Strategies for Vulvovaginal Candidiasis Treatment.	Wu YR, Chen JS, Chen LC, Chen L, Huang YF, Liao CS.	Pathogens	10.3390/pathogens14040308	2025
	Adjunctive efficacy of Bifidobacterium animalis subsp. lactis XLTG11 for functional constipation in children.	Chen K, Zhou Z, Nie Y, Cao Y, Yang P, Zhang Y, Xu P, Yu Q, Shen Y, Ma W, Jin S, Liu C.	Braz J Microbiol	10.1007/s42770-024-01276-3	2024
Pathogenicity	Comprehensive analysis of metabolites produced by co-cultivation of Bifidobacterium breve MCC1274 with human iPS-derived intestinal epithelial cells.	Sen A, Nishimura T, Yoshimoto S, Yoshida K, Gotoh A, Katoh T, Yoneda Y, Hashimoto T, Xiao JZ, Katayama T, Odamaki T.	Front Microbiol	10.3389/fmicb.2023.1155438	2023
	Risk factors for hyperglycemia in extremely low birth weight infants during the first 14 days.	Inage Y, Hirano D, Nakagawa A, Yamada S, Kotake Y, Ikoma N, Kumazawa K, Hayashi S, Tanabe Y, Kobayashi M, Shimizu M.	Pediatr Neonatol	10.1016/j.pedneo.2021.07.001	2022
	Bifidobacterium breve synergizes with Akkermansia muciniphila and Bacteroides ovatus to antagonize Clostridioides difficile.	Li Y, Rui W, Sheng X, Deng X, Li X, Meng L, Huang H, Yang J.	ISME J	10.1093/ismejo/wraf086	2025
	Enrichment of Formula in Probiotics or Prebiotics and Risk of Infection and Allergic Diseases up to Age 5.5 Years in the Nationwide Etude Longitudinale Française depuis l'Enfance (ELFE) Cohort.	Adjibade M, Davisse-Paturet C, Divaret-Chauveau A, Adel-Patient K, Raherison C, Dufourg MN, Lioret S, Charles MA, de Lauzon-Guillain B.	J Nutr	10.1093/jn/nxac013	2022
	Association between dietary intake of live microbes and chronic obstructive pulmonary disease: a cross-sectional study of NHANES 2007-2012.	Xu Y, Yan Z, Liu L.	BMC Pulm Med	10.1186/s12890-024-03453-4	2025
	The Probiotics in Pediatric Asthma Management (PROPAM) Study in the Primary Care Setting: A Randomized, Controlled, Double-Blind Trial with Ligilactobacillus salivarius LS01 (DSM 22775) and Bifidobacterium breve B632 (DSM 24706).	Drago L, Cioffi L, Giuliano M, Pane M, Amoruso A, Schiavetti I, Reid G, Ciprandi G, Propam Study Group.	J Immunol Res	10.1155/2022/3837418	2022
	Comparison of Rifaximin Monotherapy and Rifaximin Combined with Probiotics in Patients with Irritable Bowel Syndrome: A Randomized Controlled Trial.	Oh CK, Chung HH, Kim YJ, Kim JB.	Nutrients	10.3390/nu17050763	2025
Pathogenicity	Study on the regulatory effects and mechanisms of action of bifidobacterial exopolysaccharides on anaphylaxes in mice.	Luo M, Gan M, Yu X, Wu X, Xu F.	Int J Biol Macromol	10.1016/j.ijbiomac.2020.09.224	2020
Metabolism	Quantitative Physiology and Proteome Adaptations of Bifidobacterium breve NRBB57 at Near-Zero Growth Rates.	Ortiz Camargo AR, van Mastrigt O, Bongers RS, Ben-Amor K, Knol J, Abee T, Smid EJ.	Microbiol Spectr	10.1128/spectrum.02568-22	2023
	Dietary supplements in polycystic ovary syndrome-current evidence.	Han Y, Hou Y, Han Q, Yuan X, Chen L.	Front Endocrinol (Lausanne)	10.3389/fendo.2024.1456571	2024
	Evaluation of the Effect of Probiotic Supplementation on Intestinal Barrier Integrity and Epithelial Damage in Colitis Disease: A Systematic Review.	Sivri D, Seref B, Sare Bulut M, Gezmen Karadag M.	Nutr Rev	10.1093/nutrit/nuae180	2025
	Body Fat Reduction Effect of Bifidobacterium breve B-3: A Randomized, Double-Blind, Placebo Comparative Clinical Trial.	Sung HK, Youn SJ, Choi Y, Eun SW, Shin SM.	Nutrients	10.3390/nu15010028	2022
Metabolism	Probiotic fermentation of Ganoderma lucidum fruiting body extracts promoted its immunostimulatory activity in mice with dexamethasone-induced immunosuppression.	Li Y, Liu H, Qi H, Tang W, Zhang C, Liu Z, Liu Y, Wei X, Kong Z, Jia S, Du B, Yuan J, Wang C, Li M.	Biomed Pharmacother	10.1016/j.biopha.2021.111909	2021
	Lactiplantibacillus (Lactobacillus) plantarum as a Complementary Treatment to Improve Symptomatology in Neurodegenerative Disease: A Systematic Review of Open Access Literature.	Beltran-Velasco AI, Reiriz M, Uceda S, Echeverry-Alzate V.	Int J Mol Sci	10.3390/ijms25053010	2024
	Bi-Directional Relationship Between Bile Acids (BAs) and Gut Microbiota (GM): UDCA/TUDCA, Probiotics, and Dietary Interventions in Elderly People.	Francini E, Badillo Pazmay GV, Fumarola S, Procopio AD, Olivieri F, Marchegiani F.	Int J Mol Sci	10.3390/ijms26041759	2025
	Effects of intramammary infusion of Bifidobacterium breve on mastitis pathogens and somatic cell response in quarters from dairy cows with chronic subclinical mastitis.	Nagahata H, Mukai T, Natsume Y, Okuda M, Ando T, Hisaeda K, Gondaira S, Higuchi H.	Anim Sci J	10.1111/asj.13406	2020
	Gut microbiota dysbiosis at the interface of neuropsychiatric disorders and their dermatological comorbidities.	Hawkins B, Montgomery M, Bokota G, Santoyo M, Giron E, Eltokhi A.	Gut Microbes	10.1080/19490976.2025.2574934	2025
	Research Progress on the Correlation of Atopic Dermatitis with Gut Microbiota.	Mao Q, Wang X, Cai H, Yang J, Zhang Y, Min W, Qian Q, Zeng Y.	Clin Cosmet Investig Dermatol	10.2147/ccid.s442551	2024
Enzymology	Human Bifidobacterium strains as adjunct cultures in Spanish sheep milk cheese.	Langa S, Peiroten A, Gaya P, Garde S, Arques JL, Nunez M, Medina M, Rodriguez-Minguez E.	J Dairy Sci	10.3168/jds.2020-18203	2020
	Probiotic Bifidobacterium breve prevents DOCA-salt hypertension.	Robles-Vera I, de la Visitacion N, Toral M, Sanchez M, Romero M, Gomez-Guzman M, Yang T, Izquierdo-Garcia JL, Guerra-Hernandez E, Ruiz-Cabello J, Raizada MK, Perez-Vizcaino F, Jimenez R, Duarte J.	FASEB J	10.1096/fj.202001532r	2020
Metabolism	Fermented infant formula (with Bifidobacterium breve C50 and Streptococcus thermophilus O65) with prebiotic oligosaccharides is safe and modulates the gut microbiota towards a microbiota closer to that of breastfed infants.	Beghin L, Tims S, Roelofs M, Rouge C, Oozeer R, Rakza T, Chirico G, Roeselers G, Knol J, Roze JC, Turck D.	Clin Nutr	10.1016/j.clnu.2020.07.024	2021
	Probiotics' effects on gut microbiota in jaundiced neonates: a randomized controlled trial protocol.	Jiayi C, Jinying W, Yanhan Y, Tianyu L, Juanjuan C, Feng Z, Xiaohui F, Jinping Z.	Front Pediatr	10.3389/fped.2024.1296517	2024
	Effects of intramammary infusion of Bifidobacterium breve on mastitis pathogens and somatic cell response in quarters from dairy cows with chronic subclinical mastitis	Nagahata H, Mukai T, Natsume Y, Okuda M, Ando T, Hisaeda K, Gondaira S, Higuchi H.	Animal Science Journal.		2020
	Clinical efficacy of probiotic supplementation in the treatment of knee osteoarthritis: a meta-analysis.	Tian M, Zhu Y, Lu S, Qin Y, Li X, Wang T, Guo Y, Shi H, Qin D.	Front Microbiol	10.3389/fmicb.2025.1526690	2025
	Gastrointestinal comorbidities in patients with acne vulgaris: A population-based retrospective study.	Chen YW, Wu CY, Chen YJ.	JAAD Int	10.1016/j.jdin.2024.08.022	2025
	Comprehensive effects of fecal microbiota transplantation on cynomolgus macaques across various fecal conditions.	Kang P, Bae GS, Jeon E, Choi J, Hwang EH, Kim G, Baek SH, Shim K, An YJ, Lim KS, Kim Y, Oh T, Hong JJ, Lee WK, Kim SH, Koo BS.	Front Microbiol	10.3389/fmicb.2024.1458923	2024
Pathogenicity	Interactions between toll-like receptors signaling pathway and gut microbiota in host homeostasis.	Chen L, Zhang L, Hua H, Liu L, Mao Y, Wang R.	Immun Inflamm Dis	10.1002/iid3.1356	2024
	Probiotics in Children with Asthma.	Ciprandi G, Tosca MA.	Children (Basel)	10.3390/children9070978	2022
	Probiotic Administration Contributes to the Improvement in Intestinal Dysregulation Induced by Allergic Contact Dermatitis.	Mendes E, Umana ERP, Di Pace Soares Penna D, de Oliveira FA, Lemos LN, Ribeiro WR, Casaro MB, Lazarini M, Oliveira VM, Ferreira CM.	Microorganisms	10.3390/microorganisms13051082	2025
	A synbiotic mixture of Bifidobacterium breve M16-V, oligosaccharides and pectin, enhances Short Chain Fatty Acid production and improves lung health in a preclinical model for pulmonary neutrophilia.	Bezemer GFG, Diks MAP, Mortaz E, van Ark I, van Bergenhenegouwen J, Kraneveld AD, Folkerts G, Garssen J.	Front Nutr	10.3389/fnut.2024.1371064	2024
	Alleviation effects of Bifidobacterium breve on DSS-induced colitis depends on intestinal tract barrier maintenance and gut microbiota modulation.	Chen Y, Jin Y, Stanton C, Paul Ross R, Zhao J, Zhang H, Yang B, Chen W.	Eur J Nutr	10.1007/s00394-020-02252-x	2021
Pathogenicity	Effectiveness of Psychobiotics in the Treatment of Psychiatric and Cognitive Disorders: A Systematic Review of Randomized Clinical Trials.	Mosquera FEC, Lizcano Martinez S, Liscano Y.	Nutrients	10.3390/nu16091352	2024
	Lactobacillus helveticus CNU395 and L. paracasei CNU396 Alleviate Cognition in Scopolamine-Induced Cognitive Impairment Mice	Le B, Kim D, Song H, Giang P, Han H, Yang S.	Microorganisms		2025
	Targeting the Gut-Brain Axis with Plant-Derived Essential Oils: Phytocannabinoids and Beyond.	Camarda L, Mattioli LB, Corazza I, Marzetti C, Budriesi R.	Nutrients	10.3390/nu17091578	2025
	Hippocampal neurogenesis and Arc expression are enhanced in high-fat fed prepubertal female pigs by a diet including omega-3 fatty acids and Bifidobacterium breve CECT8242.	Huguet G, Puig-Parnau I, Serrano JCE, Martin-Gari M, Rodriguez-Palmero M, Moreno-Munoz JA, Tibau J, Kadar E.	Eur J Nutr	10.1007/s00394-023-03165-1	2023
	Total Transit Time and Probiotic Persistence in Healthy Adults: A Pilot Study.	Tremblay A, Auger J, Alyousif Z, Calero SEC, Mathieu O, Rivero-Mendoza D, Elmaoui A, Dahl WJ, Tompkins TA.	J Neurogastroenterol Motil	10.5056/jnm22031	2023
	Vaginal Seeding: Is There Any Positive Effect in Canine C-Sections?	Beretta S, Araujo RA, Bianchini MO, Bonavina JT, Rocha-Junior JD, Campos NC, Pizauro LJL, Rodrigues-Silva FA, Toniollo GH, Cardozo MV, Apparicio M.	Animals (Basel)	10.3390/ani15030416	2025
Phylogeny	Cervical and Vaginal Microbiomes in Early Miscarriages and Ongoing Pregnancy with and without Dydrogesterone Usage.	Gryaznova M, Kozarenko O, Smirnova Y, Burakova I, Syromyatnikov M, Maslov A, Lebedeva O.	Int J Mol Sci	10.3390/ijms241813836	2023
	Multi-year comparison of VITEK MS performance for identification of rarely encountered pathogenic gram-positive organisms (GPOs) in a large integrated Canadian healthcare region.	Church D, Griener T, Gregson D.	Microbiol Spectr	10.1128/spectrum.02545-24	2025
	The characteristics of tissue microbiota in different anatomical locations and different tissue types of the colorectum in patients with colorectal cancer.	Liu L, Shi J, Wang H, Du H, Yang J, Wei K, Zhou Z, Li M, Huang S, Zhan L, Li G, Lv Y, Shen H, Cai W.	mSystems	10.1128/msystems.00198-25	2025
	Infant microbiome cultivation and metagenomic analysis reveal Bifidobacterium 2'-fucosyllactose utilization can be facilitated by coexisting species.	Lou YC, Rubin BE, Schoelmerich MC, DiMarco KS, Borges AL, Rovinsky R, Song L, Doudna JA, Banfield JF.	Nat Commun	10.1038/s41467-023-43279-y	2023
	Effect of Probiotics on Gastrointestinal Health Through the Aryl Hydrocarbon Receptor Pathway: A Systematic Review.	De la Rosa Gonzalez A, Guerra-Ojeda S, Camacho-Villa MA, Valls A, Alegre E, Quintero-Bernal R, Martorell P, Chenoll E, Serna-Garcia M, Mauricio MD, Serna E.	Foods	10.3390/foods13213479	2024
Phylogeny	Effect of Multi-strain Probiotic Formulation on Students Facing Examination Stress: a Double-Blind, Placebo-Controlled Study.	Venkataraman R, Madempudi RS, Neelamraju J, Ahire JJ, Vinay HR, Lal A, Thomas G, Stephen S.	Probiotics Antimicrob Proteins	10.1007/s12602-020-09681-4	2021
	Initial Study on the Impact of Probiotics on Postoperative Gastrointestinal Symptoms and Gut Microbiota after Sleeve Gastrectomy: A Placebo-Controlled Study.	Dowgiallo-Gornowicz N, Mysiorska D, Sosnowska-Turek E, Botulinska A, Lech P.	Nutrients	10.3390/nu16203498	2024
	Prebiotics, Probiotics, and Synbiotics-A Research Hotspot for Pediatric Obesity.	Borka Balas R, Melit LE, Lupu A, Lupu VV, Marginean CO.	Microorganisms	10.3390/microorganisms11112651	2023
	Genome-scale metabolic model-guided systematic framework for designing customized live biotherapeutic products.	Lee YQ, Choi YM, Park SY, Kim SK, Lee M, Kim D, Koduru L, Lakshmanan M, Jung S, Kim MJ, Choe YH, Lee DY.	NPJ Syst Biol Appl	10.1038/s41540-025-00555-5	2025
	Comparative Study of Prebiotics for Infants Using a Fecal Culture System: Insights into Responders and Non-Responders.	Mingat SX, Ehara T, Nakamura H, Miyaji K.	Nutrients	10.3390/nu16193347	2024
	Heat-killed Lactococcus lactis subsp. lactis L8 ameliorates dextran sulfate sodium-induced colitis in mice.	Kawaguchi S, Chinda D, Ota S, Tonouchi A, Maeda H, Miura K, Soma G, Hiraga H, Ueno K, Niioka T, Tachizaki M, Seya K, Imaizumi T, Fukuda S, Sakuraba H.	J Clin Biochem Nutr	10.3164/jcbn.24-194	2025
	Bifidobacterium breve predicts the efficacy of anti-PD-1 immunotherapy combined with chemotherapy in Chinese NSCLC patients.	Zhao H, Li D, Liu J, Zhou X, Han J, Wang L, Fan Z, Feng L, Zuo J, Wang Y.	Cancer Med	10.1002/cam4.5312	2023
	Prospective Comparative Study of an Oral Synbiotic and a Myoinositol-Based Herbal Supplement in Modifying Hormone Levels and the Gut Microbiome in Non-cystic Acne.	Min M, Afzal N, Maloh J, Dulai AS, Ahmad N, Pinzauti D, Sivamani RK.	Dermatol Ther (Heidelb)	10.1007/s13555-025-01411-4	2025
	The impact of very-low-calorie ketogenic diets on gut microbiota in individuals with obesity: a systematic review and meta-analysis.	Wang S, Bao Z, Li Z, Zhao M, Wang X, Liu F.	Gut Microbes	10.1080/19490976.2025.2566305	2025
	Efficacy and acceptability of different probiotic products plus laxatives for pediatric functional constipation: a network meta-analysis of randomized controlled trials.	Yang WC, Zeng BS, Liang CS, Hsu CW, Su KP, Wu YC, Tu YK, Lin PY, Stubbs B, Chen TY, Chen YW, Shiue YL, Zeng BY, Suen MW, Hung CM, Wu MK, Tseng PT.	Eur J Pediatr	10.1007/s00431-024-05568-6	2024
	Probiotics on chronic urticaria: A randomized clinical trial study.	Dabaghzadeh A, Ghaffari J, Moradi S, Sayadian Separghan D.	Caspian J Intern Med	10.22088/cjim.14.2.192	2023
	The gut microbiota in persistent post-operative pain following breast cancer surgery.	Masaud K, Collins JM, Rubio RC, Corrigan M, Cotter PD, O'Brien N, Bluett R, Jimenez CK, O'Mahony SM, Shorten GD.	Sci Rep	10.1038/s41598-024-62397-1	2024
	Microbial and immune faecal determinants in infants hospitalized with COVID-19 reflect bifidobacterial dysbiosis and immature intestinal immunity.	Gutierrez-Diaz I, Sanz-Martinez M, Castro AM, Rodriguez-Belvis MV, Carreira N, Jimenez S, Mangas C, Queralt M, Herrador M, Martin-Masot R, Ferrer P, Navas-Lopez VM, Espin B, Leis R, Diaz JJ, Delgado S.	Eur J Pediatr	10.1007/s00431-023-05140-8	2023
	Beyond the Microbiome: The Gut's Role in Hypertension.	Deng W, Zhu M, Lloyd I, Nedunuri M, Zhou C, Liu W, Li Y, Li Q, Wang X, Zhang Q, Jhuma TA, Li J, Yang T.	Function (Oxf)	10.1093/function/zqaf037	2025
	An Integrated Analytical Approach for the Characterization of Probiotic Strains in Food Supplements.	Bolzon V, Pesando M, Bulfoni M, Nencioni A, Nencioni E.	Nutrients	10.3390/nu14235085	2022
	Evaluation of Faecal Microbiota Following Probiotics in Infants of Mothers with Gestational Diabetes Mellitus Trial: Protocol for Double-Blind Placebo-Controlled Randomized Trial.	Athalye-Jape G, Rath CP, Panchal H, Mishra A, Graham D, Patole S.	Microorganisms	10.3390/microorganisms13010112	2025
Pathogenicity	Integrated multi-omics analysis of the microbial profile characteristics associated with pulmonary arterial hypertension in congenital heart disease.	Xie J, Zhang X, Cheng L, Deng Y, Ren H, Mu M, Zhao L, Mu C, Chen J, Liu K, Ma R.	Microbiol Spectr	10.1128/spectrum.01808-24	2024
	Impact of maternal Bifidobacterium breve M-16V and scGOS/lcFOS supplementation during pregnancy and lactation on the maternal immune system and milk composition.	Saez-Fuertes L, Kapravelou G, Grases-Pinto B, Massot-Cladera M, Bernabeu M, Knipping K, Garssen J, Bourdet-Sicard R, Castell M, Rodriguez-Lagunas MJ, Collado MC, Perez-Cano FJ.	Front Immunol	10.3389/fimmu.2024.1418594	2024
	Mitigation of chemotherapy-induced gut dysbiosis and diarrhea by supplementation with heat-killed Bacteroides fragilis.	Yan X, Lin X, Wu J, Zheng L, Liu Y, Wu F, Lin Y, Lu Y, Huang C, Shen B, Liu H, Huang R, Hou F, Zhou Q, Song M, Liu K, Zhu F, Li S, Lin Y, Wang W, Li P, Liao W, Zhi F.	BMC Med	10.1186/s12916-025-04233-5	2025
	Influence of Bifidobacterium breve on the Glycaemic Control, Lipid Profile and Microbiome of Type 2 Diabetic Subjects: A Preliminary Randomized Clinical Trial.	Chaiyasut C, Sivamaruthi BS, Lailerd N, Sirilun S, Thangaleela S, Khongtan S, Bharathi M, Kesika P, Saelee M, Choeisoongnern T, Fukngoen P, Peerajan S, Sittiprapaporn P.	Pharmaceuticals (Basel)	10.3390/ph16050695	2023
	Compendium of Bifidobacterium-based probiotics: characteristics and therapeutic impact on human diseases.	Bocchio F, Mancabelli L, Milani C, Lugli GA, Tarracchini C, Longhi G, De Conto F, Turroni F, Ventura M.	Microbiome Res Rep	10.20517/mrr.2024.52	2025
	Microbial Biofilms: Where Are We and Where Are We Going?	Harbool SS, Ghannoum M.	J Pediatr Pharmacol Ther	10.5863/jppt-25-01211	2025
	Efficacy of gut microbiota-targeted therapies in Parkinson's disease: a systematic review and meta-analysis of randomized controlled trials.	Gu X, Tang J, Chen C.	Front Cell Infect Microbiol	10.3389/fcimb.2025.1627406	2025
	Heat-Killed Leuconostoc mesenteroides H40 Alleviates Cognitive Impairment by Anti-Inflammation and Antioxidant Effects in a Scopolamine-Induced Mouse Model.	Lee NK, Lee Y, Hwang J, Park E, Paik HD.	J Microbiol Biotechnol	10.4014/jmb.2411.11013	2025
Pathogenicity	Targeting gut microbiota dysbiosis in inflammatory bowel disease: a systematic review of current evidence.	Farah A, Paul P, Khan AS, Sarkar A, Laws S, Chaari A.	Front Med (Lausanne)	10.3389/fmed.2025.1435030	2025
Genetics	"Expanding the Lactococcal Cell Wall Polysaccharide Paradigm: Novel Structures and Metabolic Pathways in the Emerging Dairy Species Pseudolactococcus laudensis and Pseudolactococcus raffinolactis".	Soto-Serrano A, Sadovskaya I, Vinogradov E, Li W, Yu JH, White K, van Sinderen D, Krych L, Deptula P, Mahony J.	Microbiologyopen	10.1002/mbo3.70133	2025
	Early-Life Supplementation Enhances Gastrointestinal Immunity and Microbiota in Young Rats.	Saez-Fuertes L, Kapravelou G, Grases-Pinto B, Bernabeu M, Knipping K, Garssen J, Bourdet-Sicard R, Castell M, Rodriguez-Lagunas MJ, Collado MC, Perez-Cano FJ.	Foods	10.3390/foods13132058	2024
	Birth Mode Does Not Determine the Presence of Shared Bacterial Strains between the Maternal Vaginal Microbiome and the Infant Stool Microbiome.	Dos Santos SJ, Shukla I, Hill JE, Money DM, Maternal Microbiome Legacy Project Team.	Microbiol Spectr	10.1128/spectrum.00614-23	2023
	Dose-Response Efficacy and Mechanisms of Orally Administered Bifidobacterium breve CCFM683 on IMQ-Induced Psoriasis in Mice.	Chen X, Chen Y, Stanton C, Ross RP, Zhao J, Chen W, Yang B.	Nutrients	10.3390/nu15081952	2023
	An integrated neuroimaging-omics approach for the gut-brain communication pathways in Alzheimer's disease.	Sheng C, Du W, Liang Y, Xu P, Ding Q, Chen X, Jia S, Wang X.	Front Aging Neurosci	10.3389/fnagi.2023.1211979	2023
Pathogenicity	Investigating the antimicrobial and anti-inflammatory effects of Lactobacillus and Bifidobacterium spp. on cariogenic and periodontitis pathogens.	Mahdizade Ari M, Mirkalantari S, Darban-Sarokhalil D, Darbandi A, Razavi S, Talebi M.	Front Microbiol	10.3389/fmicb.2024.1383959	2024
Phylogeny	Composition of the intestinal microbiota of infant rhesus macaques at different ages before and after weaning.	Li Y, Wang J, Liu Q, Yang F, Chen L, Xu H, Jin W, Liu Y, Zhang W, Yang F, He Z, Zhao Y.	Heliyon	10.1016/j.heliyon.2023.e13915	2023
Metabolism	Lactulose ingestion causes an increase in the abundance of gut-resident bifidobacteria in Japanese women: a randomised, double-blind, placebo-controlled crossover trial.	Sakai Y, Hamano H, Ochi H, Abe F, Masuda K, Iino H.	Benef Microbes	10.3920/bm2020.0100	2021
Genetics	Bifidobacterium-derived short-chain fatty acids and indole compounds attenuate nonalcoholic fatty liver disease by modulating gut-liver axis.	Yoon SJ, Yu JS, Min BH, Gupta H, Won SM, Park HJ, Han SH, Kim BY, Kim KH, Kim BK, Joung HC, Park TS, Ham YL, Lee DY, Suk KT.	Front Microbiol	10.3389/fmicb.2023.1129904	2023
	Effect of a Probiotic Combination on Clinical and Microbiological Oral Parameters in Head and Neck Cancer Patients: A Randomised Clinical Trial	Pereira Riveros T, Jane Salas E, Lozano Borbalas A, Aguilera F, Vinuesa Aumedes T.	Cancers (Basel)		2025
	Bifidogenic Effect of 2'-Fucosyllactose (2'-FL) on the Gut Microbiome of Healthy Formula-Fed Infants: A Randomized Clinical Trial.	Lazarini T, Tonon KM, Araujo Filho HB, Morais MB.	Nutrients	10.3390/nu17060973	2025
	Visualization of Bacterial Colonization and Cellular Layers in a Gut-on-a-Chip System Using Optical Coherence Tomography.	Yuan L, de Haan P, Peterson BW, de Jong ED, Verpoorte E, van der Mei HC, Busscher HJ.	Microsc Microanal	10.1017/s143192762002454x	2020
Pathogenicity	Bifidobacterium breve Exopolysaccharide Blocks Dendritic Cell Maturation and Activation of CD4⁺ T Cells.	Hickey A, Stamou P, Udayan S, Ramon-Vazquez A, Esteban-Torres M, Bottacini F, Woznicki JA, Hughes O, Melgar S, Ventura M, Van Sinderen D, Rossini V, Nally K.	Front Microbiol	10.3389/fmicb.2021.653587	2021
	Probiotics in inflammatory bowel diseases: emphasis on mechanisms and clinical application.	Zhang J, Zhang X, Cheng X, Wang S, Lv Y, Zheng X, Wu G.	Front Med (Lausanne)	10.3389/fmed.2025.1620079	2025
	Characterization of the gut microbiota and fecal and blood metabolomes under various factors in urban children from Northwest China.	Yang Y, Chen J, Gao H, Cui M, Zhu M, Xiang X, Wang Q.	Front Cell Infect Microbiol	10.3389/fcimb.2024.1374544	2024
Genetics	Characterization of a Bifidobacterium animalis subsp. lactis reference strain based on ecology and transcriptomics.	Lugli GA, Argentini C, Tarracchini C, Mancabelli L, Viappiani A, Anzalone R, Angelini L, Alessandri G, Longhi G, Bianchi MG, Taurino G, Bussolati O, Milani C, Turroni F, Ventura M.	Appl Environ Microbiol	10.1128/aem.01080-24	2024
	The Effects of Adding Probiotic, Alone and in Combination With Zinc, to Routine Treatment on Recurrence of Hepatic Encephalopathy, Quality of Life, and Sleep Quality in Patients With Cirrhosis: An Open-Label Randomized Controlled Trial.	Amooyi L, Alizadeh L, Sarbakhsh P, Shojaei-Zarghani S, Gharekhani A.	Food Sci Nutr	10.1002/fsn3.4636	2025
Pathogenicity	Cheese starter cultures attenuate inflammation in the in vitro Caco-2 model.	Kuttappan D, Muttathukonam SH, Amalaradjou MA.	AIMS Microbiol	10.3934/microbiol.2025017	2025
	Comprehensive insights from composition to functional microbe-based biodiversity of the infant human gut microbiota.	Lugli GA, Mancabelli L, Milani C, Fontana F, Tarracchini C, Alessandri G, van Sinderen D, Turroni F, Ventura M.	NPJ Biofilms Microbiomes	10.1038/s41522-023-00392-6	2023
	The impact of probiotics on pulmonary, gastrointestinal, and growth outcomes in pediatric cystic fibrosis: a randomized controlled trial.	Rahmani P, Rohani P, Kariman A, Motamed F, Modaresi MR, Eftekhari K, Ayati M, Sohouli MH.	BMC Pediatr	10.1186/s12887-025-05789-0	2025
	Gut Bifidobacterium longum is associated with better native liver survival in patients with biliary atresia.	Lee CS, Lin CR, Chua HH, Wu JF, Chang KC, Ni YH, Chang MH, Chen HL.	JHEP Rep	10.1016/j.jhepr.2024.101090	2024
Pathogenicity	Microbiome Modulation in Pediatric Leukemia: Impact on Graft-Versus-Host Disease and Treatment Outcomes: A Narrative Review.	Todor SB, Ichim C.	Children (Basel)	10.3390/children12020166	2025
	Importance of Gut Microbiota in Patients with Inflammatory Bowel Disease.	Ekstedt N, Jamiol-Milc D, Pieczynska J.	Nutrients	10.3390/nu16132092	2024
	Pediococcus acidilactici attenuates chronic stress-induced depression via generating metabolite indole-3-lactic acid and downregulating neuroinflammation.	Wang Y, Gong J, Geng K, Chen X, Jia M, Yang C, Zhang S, Pan J, Wu R, Liu Z, Yuan T.	J Neuroinflammation	10.1186/s12974-025-03580-7	2025
	Effect of a Multi-Strain Probiotic Supplementation to Manage Stress during the COVID-19 Pandemic: A Randomized, Double-Blind, Placebo-Controlled, Cross-Over Clinical Trial.	Nobile V, Puoci F.	Neuropsychobiology	10.1159/000527956	2023
Pathogenicity	Evaluation of Porcine Intestinal Epitheliocytes as an In vitro Immunoassay System for the Selection of Probiotic Bifidobacteria to Alleviate Inflammatory Bowel Disease.	Sato N, Yuzawa M, Aminul MI, Tomokiyo M, Albarracin L, Garcia-Castillo V, Ideka-Ohtsubo W, Iwabuchi N, Xiao JZ, Garcia-Cancino A, Villena J, Kitazawa H.	Probiotics Antimicrob Proteins	10.1007/s12602-020-09694-z	2021
	Production of flavonoid and lignan aglycones from flaxseed and soy extracts by Bifidobacterium strains	Peiroten A, Alvarez I, Landete JM.	International journal of food science and technology.	10.1111/ijfs.14459	2020
Transcriptome	Multi-omics analysis reveals associations between gut microbiota and host transcriptome in colon cancer patients.	Qin Y, Wang Q, Lin Q, Liu F, Pan X, Wei C, Chen J, Huang T, Fang M, Yang W, Pan L.	mSystems	10.1128/msystems.00805-24	2025
Phylogeny	Changes in intestinal bacterial characteristics during hospitalization in the NICU in very low birth weight infants.	Wu J, Wang T, Yu B.	Ital J Pediatr	10.1186/s13052-025-02095-4	2025
Metabolism	Bifidobacterium breve MCC1274 with glycosidic activity enhances in vivo isoflavone bioavailability.	Yao R, Wong CB, Nakamura K, Mitsuyama E, Tanaka A, Kuhara T, Odamaki T, Xiao JZ.	Benef Microbes	10.3920/bm2018.0179	2019
Pathogenicity	The Interplay Between Gut Microbiota, Adipose Tissue, and Migraine: A Narrative Review.	Biagioli V, Mela F, Ferraro P, Villano G, Orsini A, Diana MC, Striano P, Santangelo A.	Nutrients	10.3390/nu17020337	2025
	Probiotic Supplements Effect on Feeding Tolerance, Growth and Neonatal Morbidity in Extremely Preterm Infants: A Systematic Review and Meta-Analysis.	Soderquist Kruth S, Persad E, Rakow A.	Nutrients	10.3390/nu17071228	2025
	Effect of multi-strain probiotic (UB0316) in weight management in overweight/obese adults: a 12-week double blind, randomised, placebo-controlled study.	Sudha MR, Ahire JJ, Jayanthi N, Tripathi A, Nanal S.	Benef Microbes	10.3920/bm2019.0052	2019
	The anti-allergic effect of Lactobacillus plantarum GUANKE on allergic rhinitis induced by either ragweed pollen or house dust mites in mice.	Zhao P, Zhang B, Zhao LS, Yang Z, Li MD.	Front Nutr	10.3389/fnut.2025.1678249	2025
	Should We Be Going With Our Patient's Gut (Bacteria)? The Intestinal Microbiota and Epilepsy Treatments.	Eyal S.	Epilepsy Curr	10.1177/15357597221123907	2022
	Impact of Human Milk Oligosaccharides and Probiotics on Gut Microbiome and Mood in Autism: A Case Report.	Aldegheri L, Kharrat F, Conti A, Monica F, Busa F, Campisciano G, Zanotta N, Cason C, Comar M.	Microorganisms	10.3390/microorganisms12081625	2024
	Bifidobacterium longum P77 and Lactiplantibacillus plantarum P72 and Their Mix-Live or Heat-Treated-Mitigate Sleeplessness and Depression in Mice: Involvement of Serotonergic and GABAergic Systems.	Baek JS, Ma X, Park HS, Lee DY, Kim DH.	Cells	10.3390/cells14191547	2025
Pathogenicity	Effects of Bifidobacterium breve A1 on the cognitive function of older adults with memory complaints: a randomised, double-blind, placebo-controlled trial.	Kobayashi Y, Kuhara T, Oki M, Xiao JZ.	Benef Microbes	10.3920/bm2018.0170	2019
	The Role of Bifidobacterium in COVID-19: A Systematic Review.	Taufer CR, Rampelotto PH.	Life (Basel)	10.3390/life13091847	2023
	Somatic cell and innate immune responses in mammary glands of lactating cows to intramammary infusion of Bifidobacterium breve at pre-drying off period.	Nagahata H, Kine M, Watanabe H, Tanaka A, Takahashi A, Gondaira S, Higuchi H.	J Vet Med Sci	10.1292/jvms.21-0306	2021
	Commensal collaborations: Food allergy and the microbiome.	Arditi Z, Bunyavanich S.	J Allergy Clin Immunol	10.1016/j.jaci.2023.08.001	2023
	Effects of Bifidobacterium animalis subsp. lactis IU100 on Immunomodulation and Gut Microbiota in Immunosuppressed Mice.	Zhou L, Yin X, Fang B, He J, Zhan J, Zhang X, Wang R.	Microorganisms	10.3390/microorganisms12030493	2024
Phylogeny	Development of a Multiplex Real-Time Quantitative PCR Assay for Detecting Vaginal Microbiota in Chinese Women - China, 2021-2022.	Wang X, Zhang Y, Liu T, Song C, Xue X, Liu J, Zhao H.	China CDC Wkly	10.46234/ccdcw2024.173	2024
	Microbiota-gut-brain axis and anxiety or depression: A perspective from bibliometric and visual analysis.	Lu R, Zhou H, Yuan J, Ding Z.	Medicine (Baltimore)	10.1097/md.0000000000043221	2025
	Bifidobacterium bifidum G9-1 Survives in the Intestinal Environment and Influences the Gut Microbiota Despite the Presence of Antimicrobials.	Yokota H, Makizaki Y, Tanaka Y, Ohno H.	Microbiol Immunol	10.1111/1348-0421.13230	2025
	Transmission and Persistence of Infant Gut-Associated Bifidobacteria.	Hilliard MA, Sela DA.	Microorganisms	10.3390/microorganisms12050879	2024
	Exploring the Influence of Gut-Brain Axis Modulation on Cognitive Health: A Comprehensive Review of Prebiotics, Probiotics, and Symbiotics.	Fekete M, Lehoczki A, Major D, Fazekas-Pongor V, Csipo T, Tarantini S, Csizmadia Z, Varga JT.	Nutrients	10.3390/nu16060789	2024
	Effect of the gut microbiome, plasma metabolome, peripheral cells, and inflammatory cytokines on obesity: a bidirectional two-sample Mendelian randomization study and mediation analysis.	Li Y, Wang X, Zhang Z, Shi L, Cheng L, Zhang X.	Front Immunol	10.3389/fimmu.2024.1348347	2024
	Gut Microbial Species and Endotypes Associate with Remission in Ulcerative Colitis Patients Treated with Anti-TNF or Anti-integrin Therapy.	Tamburini FB, Tripathi A, Gold MP, Yang JC, Biancalani T, McBride JM, Keir ME, Gardenia Study Group.	J Crohns Colitis	10.1093/ecco-jcc/jjae084	2024
	Lipid and Energy Metabolism of the Gut Microbiota Is Associated with the Response to Probiotic Bifidobacterium breve Strain for Anxiety and Depressive Symptoms in Schizophrenia.	Yamamura R, Okubo R, Katsumata N, Odamaki T, Hashimoto N, Kusumi I, Xiao J, Matsuoka YJ.	J Pers Med	10.3390/jpm11100987	2021
	Efficacy of dietary supplements as an adjunctive therapy for polycystic ovary syndrome: an umbrella meta-analysis.	Wang R, Huang K, Wang M, Zou W, Huang Y, Jiang W, Feng Y, Shen H, Lei X.	Front Nutr	10.3389/fnut.2025.1705284	2025
Pathogenicity	Supplementation with Probiotic Camel Milk Powder Improves Serum Glucose and Cholesterol as Well as the Related Cytokines in Patients with Type 2 Diabetes Mellitus.	Liu Y, Zhang M, Wang R, Ge S, Fang B.	Foods	10.3390/foods14193318	2025
	Bifidobacterium adolescentis PRL2019 in Pediatric Irritable Bowel Syndrome: A Multicentric, Randomized, Double-Blind, Placebo-Controlled Trial.	Giorgio V, Quatrale G, Mennini M, Piccirillo M, Furio S, Stella G, Ferretti A, Parisi P, Evangelisti M, Felici E, Quitadamo P, Di Nardo G.	Microorganisms	10.3390/microorganisms13030627	2025
	Probiotics to prevent necrotizing enterocolitis in very low birth weight infants: A network meta-analysis.	Zhou KZ, Wu K, Deng LX, Hu M, Luo YX, Zhang LY.	Front Pediatr	10.3389/fped.2023.1095368	2023
Phylogeny	Analysis of gastric mucosa associated microbiota in functional dyspepsia using 16S rRNA gene next-generation sequencing.	Soliman NS, Soliman MS, Elhossary W, El-Kholy AA.	BMC Microbiol	10.1186/s12866-025-04095-0	2025
	Identification and evaluation of probiotic potential of Bifidobacterium breve AHC3 isolated from chicken intestines and its effect on necrotizing enterocolitis (NEC) in newborn SD rats.	Lin X, Wu C.	PLoS One	10.1371/journal.pone.0287799	2023
	Mitigation of PFOA-Induced Developmental Toxicity in Danio rerio by Bacillus subtilis var. natto: Focus on Growth and Ossification.	Giommi C, Lombo M, Francioni F, Sella F, Habibi HR, Maradonna F, Carnevali O.	Int J Mol Sci	10.3390/ijms26094261	2025
Pathogenicity	Bifidobacteria with indole-3-lactic acid-producing capacity exhibit psychobiotic potential via reducing neuroinflammation.	Qian X, Li Q, Zhu H, Chen Y, Lin G, Zhang H, Chen W, Wang G, Tian P.	Cell Rep Med	10.1016/j.xcrm.2024.101798	2024
	Postbiotics as Mitochondrial Modulators in Inflammatory Bowel Disease: Mechanistic Insights and Therapeutic Potential.	Prajapati SK, Yadav D, Katiyar S, Jain S, Yadav H.	Biomolecules	10.3390/biom15070954	2025
Phylogeny	Pharmacological Potential of Arthrospira platensis in Mitigating Sub-Chronic Colitis: Redox Homeostasis and Gut Microbiota Modulation.	Aziez M, Yanat B, Rodriguez-Diaz C, Suharoschi R, Vulturar R, Heghes SC, Guenaoui N, Ali AM, Garcia-Fuentes E, Bribi N.	Curr Issues Mol Biol	10.3390/cimb47090778	2025
	Combined Administration of Lactobacillus or Bifidobacterium Offers Enhanced Antidepressant and Anxiolytic Activity in a Dose Dependent Manner.	Bankah AZ, Tagoe TA, Darko E, Agoha R, Ametefe EN, Kukuia KKE, Adjei S.	Brain Behav	10.1002/brb3.70564	2025
	Intestinal-Failure-Associated Liver Disease: Beyond Parenteral Nutrition.	Mignini I, Piccirilli G, Di Vincenzo F, Covello C, Pizzoferrato M, Esposto G, Galasso L, Borriello R, Gabrielli M, Ainora ME, Gasbarrini A, Zocco MA.	Biomolecules	10.3390/biom15030388	2025
	Probiotics enhances anti-tumor immune response induced by gemcitabine plus cisplatin chemotherapy for urothelial cancer.	Miyake M, Oda Y, Owari T, Iida K, Ohnishi S, Fujii T, Nishimura N, Miyamoto T, Shimizu T, Ohnishi K, Hori S, Morizawa Y, Gotoh D, Nakai Y, Torimoto K, Tanaka N, Fujimoto K.	Cancer Sci	10.1111/cas.15666	2023
	Immunomodulatory Effects of Bifidobacterium spp. and Use of Bifidobacterium breve and Bifidobacterium longum on Acute Diarrhea in Children.	Choi YJ, Shin SH, Shin HS.	J Microbiol Biotechnol	10.4014/jmb.2206.06023	2022
Metabolism	Preparation of Bifidobacterium breve encapsulated in low methoxyl pectin beads and its effects on yogurt quality.	Li M, Jin Y, Wang Y, Meng L, Zhang N, Sun Y, Hao J, Fu Q, Sun Q.	J Dairy Sci	10.3168/jds.2018-15597	2019
	Survival of Lactobacillus rhamnosus GG in Chitosan-Coated Alginate Beads: Effects of Food Matrices (Casein, Corn Starch, and Soybean Oil) and Dynamic Gastrointestinal Conditions.	Udo T, Mummaleti G, Qin Z, Chen J, Singh RK, Jiao Y, Kong F.	Foods	10.3390/foods14122094	2025
	Early life bifidobacterial mother-infant transmission: greater contribution from the infant gut to human milk revealed by microbiomic and culture-based methods.	Wu S, Luo G, Jiang F, Jia W, Li J, Huang T, Zhang X, Mao Y, Su S, Han W, He F, Cheng R.	mSystems	10.1128/msystems.00480-25	2025
	Effects of Synbiotic Lacticaseibacillus paracasei, Bifidobacterium breve, and Prebiotics on the Growth Stimulation of Beneficial Gut Microbiota.	Kaewarsar E, Chaiyasut C, Lailerd N, Makhamrueang N, Peerajan S, Sirilun S.	Foods	10.3390/foods12203847	2023
	Potential of jackfruit inner skin fibre for encapsulation of probiotics on their stability against adverse conditions.	Petsong K, Kaewthong P, Kingwascharapong P, Nilsuwan K, Karnjanapratum S, Tippayawat P.	Sci Rep	10.1038/s41598-023-38319-y	2023
	Effect of Probiotics on Sperm Quality in the Adult Mouse.	Sanchez-Rodriguez A, Idrovo IID, Villafranca R, Latorre N, Rielo JA, Laburu A, Nieto-Roman S, Heredia D, Gonzalez R, Garcia-Canas V, Laxalde D, Simo C, Vieites DR, Roldan ERS.	Probiotics Antimicrob Proteins	10.1007/s12602-024-10388-z	2025
Phylogeny	Fecal Microbiota Characteristics in Constipation-Predominant and Mixed-Type Irritable Bowel Syndrome.	Gryaznova M, Smirnova Y, Burakova I, Morozova P, Lagutina S, Chizhkov P, Korneeva O, Syromyatnikov M.	Microorganisms	10.3390/microorganisms12071414	2024
	Probiotic Bifidobacterium breve MCC1274 Mitigates Alzheimer's Disease-Related Pathologies in Wild-Type Mice.	Abdelhamid M, Zhou C, Jung CG, Michikawa M.	Nutrients	10.3390/nu14122543	2022
	Microbiome and cancer: from mechanistic implications in disease progression and treatment to development of novel antitumoral strategies.	Constantin M, Chifiriuc MC, Mihaescu G, Corcionivoschi N, Burlibasa L, Bleotu C, Tudorache S, Mitache MM, Filip R, Munteanu SG, Gradisteanu Pircalabioru G.	Front Immunol	10.3389/fimmu.2024.1373504	2024
	Screening novel antiviral compounds to treat Clostridioides difficile infections.	Stolz BJ, Abouelkhair AA, Seleem MN.	PLoS One	10.1371/journal.pone.0309624	2024
	Application of Lactobacillus helveticus KLDS 1.1105 Postbiotics for Resisting Pathogenic Bacteria Infection in the Intestine	Du P, Liu J, Hu C, Zhang J, Li M, Xin Y, Liu L, Li A, Li C.	Foods		2025
	Early Transpyloric Tube Feeding in Preventing Adverse Respiratory Events in Extremely Low Birth Weight Infants.	Tanaka S, Namba F, Nagaya K, Yonemoto N, Hirano S, Yanagihara I, Kitajima H, Fujimura M.	Biomedicines	10.3390/biomedicines12122799	2024
Metabolism	Association of Plasma Hemoglobin A1c with Improvement of Cognitive Functions by Probiotic Bifidobacterium breve Supplementation in Healthy Adults with Mild Cognitive Impairment.	Bernier F, Ohno K, Katsumata N, Shimizu T, Xiao J.	J Alzheimers Dis	10.3233/jad-201488	2021
	Tolerance development in cow's milk-allergic infants receiving amino acid-based formula: A randomized controlled trial.	Chatchatee P, Nowak-Wegrzyn A, Lange L, Benjaponpitak S, Chong KW, Sangsupawanich P, van Ampting MTJ, Oude Nijhuis MM, Harthoorn LF, Langford JE, Knol J, Knipping K, Garssen J, Trendelenburg V, Pesek R, Davis CM, Muraro A, Erlewyn-Lajeunesse M, Fox AT, Michaelis LJ, Beyer K, PRESTO study team.	J Allergy Clin Immunol	10.1016/j.jaci.2021.06.025	2022
	Prebiotics and Probiotics: Therapeutic Tools for Nonalcoholic Fatty Liver Disease.	Mijangos-Trejo A, Nuno-Lambarri N, Barbero-Becerra V, Uribe-Esquivel M, Vidal-Cevallos P, Chavez-Tapia N.	Int J Mol Sci	10.3390/ijms241914918	2023
	Outcomes in preterm small versus appropriate for gestation infants after Bifidobacterium breve M-16 V supplementation.	Athalye-Jape G, Minaee N, Nathan E, Simmer K, Patole S.	J Matern Fetal Neonatal Med	10.1080/14767058.2018.1543657	2020
	The Impact of Bacterial-Fungal Interactions on Childhood Caries Pathogenesis.	Huang S, Wang H, Tian J, Qin M, Gao R, Zhao B, Wang J, Wu H, Xu H.	Pathogens	10.3390/pathogens14101033	2025
	The Association Between Lactational Infective Mastitis and the Microbiome: Development, Onset, and Treatments.	Saifi F, Jeoboam B, Demory Beckler M, Costin JM.	Cureus	10.7759/cureus.62717	2024
Genetics	Effect of protein modification in synbiotic infant formula on probiotic metabolic activity and bacterial composition in an infant gut-model.	Klaassens ES, Baak ML, Mekkes NJ, Bongoni R, Schaubeck M.	Microbiome Res Rep	10.20517/mrr.2024.13	2024
	Nutritional interventions to counteract the detrimental consequences of early-life stress.	Geertsema J, Juncker HG, Wilmes L, Burchell GL, de Rooij SR, van Goudoever JB, O'Riordan KJ, Clarke G, Cryan JF, Korosi A.	Mol Psychiatry	10.1038/s41380-025-03020-1	2025
	Assessing the microbial diversity and proximate composition of smoked-fermented bushmeat from four different bushmeat samples.	Amponsah AS, Ankar-Brewoo GM, Lutterodt HE, Ofosu IW.	BioTechnologia (Pozn)	10.5114/bta.2024.135637	2024
	The role of gut microbiota in diarrhea and its alleviation through microbiota-targeted interventions.	Tian R, Chong CJ, Bai YY, Chen N, Qiao RR, Wang K, Wang YW, Zhao P, Zhao CB, Tang YP, Zhang L, Zhang Q.	Front Microbiol	10.3389/fmicb.2025.1630823	2025
Phenotype	Patterns of Human Milk Oligosaccharides in Mature Milk Are Associated with Certain Gut Microbiota in Infants.	Mao S, Zhao A, Jiang H, Yan J, Zhong W, Xun Y, Zhang Y.	Nutrients	10.3390/nu16091287	2024
	Lacticaseibacillus rhamnosus LRa05 in the treatment of acute diarrhea in children: a randomized controlled trial.	Chen K, Zeng K, Jin S, Ma Y, Cai L, Xu P, Nie Y, Luo L, Yu Q, Liu C.	Front Nutr	10.3389/fnut.2024.1479186	2024
	Ascophyllum nodosum based plant biostimulant shapes the bacterial community in the rhizosphere of corn.	Selvaraj VK, Patel JS, Hui JPM, Zhang J, Berrue F, Prithiviraj B.	BMC Plant Biol	10.1186/s12870-025-07270-7	2025
	Therapeutic Modulation of the Gut Microbiome by Supplementation with Probiotics (SCI Microbiome Mix) in Adults with Functional Bowel Disorders: A Randomized, Double-Blind, Placebo-Controlled Trial.	Bang WY, Moon JS, Kim H, Lee HB, Kim D, Shin M, Jung YH, Shin J, Yang J.	Microorganisms	10.3390/microorganisms13102283	2025
Pathogenicity	Native Lactobacillus and Bifidobacterium probiotics modulate autophagy genes and exert anti-inflammatory effect.	Jouriani FH, Torkamaneh M, Torfeh M, Ashrafian F, Aghamohammad S, Rohani M.	Sci Rep	10.1038/s41598-025-09596-6	2025
	Probiotics and inflammatory bowel disease: an umbrella meta-analysis of relapse, recurrence, and remission outcomes.	Liu W, Zhang S, Dong C, Lv X, Zheng X, Zhao W, Jamali M, Abedi R, Saedisomeolia A.	Nutr Metab (Lond)	10.1186/s12986-025-01002-2	2025
	Maternal Exposure to Endocrine-Disrupting Chemicals: Analysis of Their Impact on Infant Gut Microbiota Composition.	Vacca M, Calabrese FM, Loperfido F, Maccarini B, Cerbo RM, Sommella E, Salviati E, Voto L, De Angelis M, Ceccarelli G, Di Napoli I, Raspini B, Porri D, Civardi E, Garofoli F, Campiglia P, Cena H, De Giuseppe R.	Biomedicines	10.3390/biomedicines12010234	2024
	Characteristics of bifidobacterial conjugated fatty acid and hydroxy fatty acid production and its potential application in fermented milk	Gao H, Yang B, Stanton C, Ross RP, Zhang H, Liu Z, Chen H, Chen W.	Lebensm Wiss Technol	10.1016/j.lwt.2019.108940	2020
	The Combination of Bifidobacterium breve and Three Prebiotic Oligosaccharides Modifies Gut Immune and Endocrine Functions in Neonatal Mice.	Izumi H, Ehara T, Sugahara H, Matsubara T, Mitsuyama E, Nakazato Y, Tsuda M, Shimizu T, Odamaki T, Xiao JZ, Takeda Y.	J Nutr	10.1093/jn/nxy248	2019
	Effects of dietary fiber on the composition, function, and symbiotic interactions of intestinal microbiota in pre-weaned calves.	Lu W, Yi X, Ge Y, Zhang X, Shen K, Zhuang H, Deng Z, Liu D, Cao J, Ma C.	Front Microbiol	10.3389/fmicb.2025.1554484	2025
	Probiotic as a Potential Gut Microbiome Modifier for Stroke Treatment: A Systematic Scoping Review of In Vitro and In Vivo Studies.	Savigamin C, Samuthpongtorn C, Mahakit N, Nopsopon T, Heath J, Pongpirul K.	Nutrients	10.3390/nu14173661	2022
	Decreased surface receptors, function, and suboptimal osteoclasts-induced cell expansion in natural killer (NK) cells of elderly subjects.	Kaur K, Jewett A.	Aging (Albany NY)	10.18632/aging.206226	2025
	Arabinoxylan from Argentinian whole wheat flour promote the growth of Lactobacillus reuteri and Bifidobacterium breve.	Paesani C, Salvucci E, Moiraghi M, Fernandez Canigia L, Perez GT.	Lett Appl Microbiol	10.1111/lam.13097	2019
	Probiotics Prevent Dysbiosis and the Rise in Blood Pressure in Genetic Hypertension: Role of Short-Chain Fatty Acids.	Robles-Vera I, Toral M, de la Visitacion N, Sanchez M, Gomez-Guzman M, Romero M, Yang T, Izquierdo-Garcia JL, Jimenez R, Ruiz-Cabello J, Guerra-Hernandez E, Raizada MK, Perez-Vizcaino F, Duarte J.	Mol Nutr Food Res	10.1002/mnfr.201900616	2020
Pathogenicity	Gut microbiota dysbiosis promotes coronary heart disease comorbid with depression through lipopolysaccharides and Toll-like receptor 4.	Pan Y, Luo Y, Wu G, Lu Y, Yang P, Kong P, Zheng C, Wang C, Yang L, Li X.	BMC Microbiol	10.1186/s12866-025-04302-y	2025
Pathogenicity	Kombucha Prevents Indomethacin-Induced Enteric Damage in Wistar Rat by Enhancing Epithelial Gut Barrier and Modulating Gut Microbiota.	Varela-Mendoza AA, Martinez-Flores MM, Paz-Jimenez MG, Garcia-Acevedo F, Cordova-Davalos LE, Barrios-Garcia T, Martinez-Saldana MC, Salinas-Guardado V, Jimenez M, Salinas E, Cervantes-Garcia D.	Food Sci Nutr	10.1002/fsn3.70804	2025
	Characteristics of the gut microbiota in patients with advanced non-small cell lung cancer who responded to immune checkpoint inhibitors.	Komatsu H, Sugimoto T, Ogata Y, Miura T, Aida M, Nishiyama H, Kawai M, Yano Y, Mori M, Shishido Y.	Sci Rep	10.1038/s41598-025-08049-4	2025
	The Efficacy of Probiotics Supplementation on the Quality of Life of Patients with Gastrointestinal Disease: A Systematic Review of Clinical Studies.	Moludi J, Saber A, Zozani MA, Moradi S, Azamian Y, Hajiahmadi S, Pasdar Y, Moradi F.	Prev Nutr Food Sci	10.3746/pnf.2024.29.3.237	2024
	Interaction between gut microbiota and immune checkpoint inhibitor-related colitis.	Zhou G, Zhang N, Meng K, Pan F.	Front Immunol	10.3389/fimmu.2022.1001623	2022
	Impact of a Limosilactobacillus fermentum, Quercetin, and Resveratrol Nutraceutical on Fecal Microbiota Composition and Metabolic Activity in Healthy and Hypertensive Subjects.	Brasil JMA, Melo NCO, Sampaio KB, Costa PCTD, Duman H, Karav S, Lima MDS, de Souza EL, Alves JLB.	Foods	10.3390/foods14060986	2025
	Oral administration of Limosilactobacillus reuteri VHProbi® M07 alleviates ovalbumin-induced allergic asthma in mice.	Meng G, Cui H, Feng C, Guo C, Song L, Duan Z.	PLoS One	10.1371/journal.pone.0317587	2025
Biotechnology	Global wastewater microbiome reveals core bacterial community and viral diversity with regional antibiotic resistance patterns.	Yan Y, Zhao X, Liang X, Xue Y, Niu Q, Li D, Zhou X, Li Y, Dong S, Gai Y.	mSystems	10.1128/msystems.01428-24	2025
	Evaluation of xylooligosaccharides and fructooligosaccharides on digestive enzymes hydrolysis and as a nutrient for different probiotics and Salmonella typhimurium	de Figueiredo FC, de Barros Ranke FF, de Oliva-Neto P.	Lebensm Wiss Technol	10.1016/j.lwt.2019.108761	2020
	Enterocins Produced by Enterococci Isolated from Breast-Fed Infants: Antilisterial Potential.	Landete JM, Montiel R, Rodriguez-Minguez E, Arques JL.	Children (Basel)	10.3390/children11020261	2024
Pathogenicity	Bifidobacterium lactis-Derived Vesicles Attenuate Hippocampal Neuroinflammation by Targeting IL-33 to Regulate FoxO6/P53 Signaling.	Du X, Zhang M, Wang R, Zeng Z, Zhao W, Fang B, Lan H, Hung W, Gao H.	Nutrients	10.3390/nu16213586	2024
	Breaking down barriers: is intestinal mucus degradation by Akkermansia muciniphila beneficial or harmful?	Tingler AM, Engevik MA.	Infect Immun	10.1128/iai.00503-24	2025
Pathogenicity	Circadian rhythms of gut microbiota and plaque vulnerability: mechanisms and chrono-microbiota modulation interventions.	Zhai T, Zou X, Zhang Z, Wang Y, Shi L, Ren W, Huang J.	Gut Microbes	10.1080/19490976.2025.2532703	2025
Metabolism	Optimization of culture conditions of soymilk for equol production by Bifidobacterium breve 15700 and Bifidobacterium longum BB536.	Mustafa SE, Mustafa S, Abas F, Manap MYABD, Ismail A, Amid M, Elzen S.	Food Chem	10.1016/j.foodchem.2018.11.107	2019
Metabolism	In-Vitro Prebiotic Analysis of Microbiota Accessible Pectic Polysaccharides.	Tingirikari JMR.	Curr Microbiol	10.1007/s00284-019-01781-x	2019
Pathogenicity	Investigating the effect of synbiotic supplementation on inflammatory indices in critically ill septic children: a protocol study for randomized control trial.	Chamani A, Mashhadi F, Khademi G, Nematy M, Emadzadeh M, Sezavar M, Roudi F.	Trials	10.1186/s13063-024-08514-x	2024
Metabolism	Integrative Metabolomic Characterization Reveals the Mediating Effect of Bifidobacterium breve on Amino Acid Metabolism in a Mouse Model of Alzheimer's Disease.	Zhu G, Guo M, Zhao J, Zhang H, Wang G, Chen W.	Nutrients	10.3390/nu14040735	2022
	Study of the Effect of Synbiotic Diet on Haematological and Oxidative Indexes Changes in Male Dogs.	Armian AM, Pourjafar H, Gharamaleki MN.	Vet Med Sci	10.1002/vms3.70290	2025
	Association between yogurt and dietary supplements containing probiotic consumption with sleep disturbance in US adults: Results from NHANES, 2009-2018.	Yang RZ, Lin SZ, Xie XY, Tang YJ, Zheng JX, Yuan CM, Lin YY, Wu XD, Zeng K.	Heliyon	10.1016/j.heliyon.2024.e35609	2024
	Astragalus polysaccharide modulates the gut microbiota and metabolites of patients with major depressive disorder in an in vitro fermentation model: a pilot study.	Mi Y, Lin C, Zheng H, Wu Y, Hou Y, Hu J, Mao J, Dai N, Li X, Lou Z, Ji Y.	Front Nutr	10.3389/fnut.2025.1587742	2025
	The Effect of Probiotics on the Prognostication of the Neutrophil-to-Lymphocyte Ratio in Severe Multi-Trauma Patients.	Menni AE, Tzikos G, Fyntanidou B, Ioannidis A, Loukipoudi L, Grosomanidis V, Chorti A, Shrewsbury A, Stavrou G, Kotzampassi K.	J Pers Med	10.3390/jpm14040419	2024
	Gut Microbiome and Stroke: a Bidirectional Mendelian Randomisation Study in East Asian and European Populations.	Cheng S, Zheng H, Wei Y, Lin X, Gu Y, Guo X, Fan Z, Li H, Cheng S, Liu S.	Stroke Vasc Neurol	10.1136/svn-2023-002717	2024
	The Role of Gut Microbiota Modification in Nonalcoholic Fatty Liver Disease Treatment Strategies.	Yaghmaei H, Bahanesteh A, Soltanipur M, Takaloo S, Rezaei M, Siadat SD.	Int J Hepatol	10.1155/2024/4183880	2024
	Bacterial metabolites influence the autofluorescence of Clostridioides difficile.	Ticer TD, Tingler AM, Glover JS, Dooley SA, Kendrick J, Zackular JP, Devkota S, Wu GD, Mahalak K, Engevik A, Engevik MA.	Front Microbiol	10.3389/fmicb.2024.1459795	2024
	A catalog of ethanol-producing microbes in humans.	Mbaye B, Wasfy RM, Alou MT, Borentain P, Gerolami R, Dufour JC, Million M.	Future Microbiol	10.2217/fmb-2023-0250	2024
Genetics	Microbial metagenomic shifts in children with acute lymphoblastic leukaemia during induction therapy and predictive biomarkers for infection.	Wang H, Zhang Y, Zhou Q, Yu L, Fu J, Lin D, Huang L, Lai X, Wu L, Zhang J, Zi J, Liao X, Huang S, Xie Y, He Y, Yang L.	Ann Clin Microbiol Antimicrob	10.1186/s12941-024-00717-z	2024
Metabolism	Bifidobacterium breve intervention combined with environmental enrichment alleviates cognitive impairment by regulating the gut microbiota and microbial metabolites in Alzheimer's disease mice.	Zhu G, Guo M, Zhao J, Zhang H, Wang G, Chen W.	Front Immunol	10.3389/fimmu.2022.1013664	2022
	Lactobacillus oris improves non-alcoholic fatty liver in mice and inhibits endogenous cholesterol biosynthesis.	Zhao Y, Li C, Luan Z, Chen J, Wang C, Jing Y, Qi S, Zhao Z, Zhang H, Wu J, Chen Y, Li Z, Zhao B, Wang S, Yang Y, Sun G.	Sci Rep	10.1038/s41598-023-38530-x	2023
	Effect of bifidobacterium breve A-1 on anxiety and depressive symptoms in schizophrenia: A proof-of-concept study.	Okubo R, Koga M, Katsumata N, Odamaki T, Matsuyama S, Oka M, Narita H, Hashimoto N, Kusumi I, Xiao J, Matsuoka YJ.	J Affect Disord	10.1016/j.jad.2018.11.011	2019
Pathogenicity	The Anti-Inflammatory and Curative Exponent of Probiotics: A Comprehensive and Authentic Ingredient for the Sustained Functioning of Major Human Organs.	Virk MS, Virk MA, He Y, Tufail T, Gul M, Qayum A, Rehman A, Rashid A, Ekumah JN, Han X, Wang J, Ren X.	Nutrients	10.3390/nu16040546	2024
	The Impact of Synbiotics on the Bacterial Flora During the Course of Chronic Sinusitis.	Goroszkiewicz K, Lisowska G, Stryjewska-Makuch G, Karlowska-Bijak O, Misiolek M.	Medicina (Kaunas)	10.3390/medicina61071306	2025
Transcriptome	Protocol to analyze the bacterial pangenome using PAN2HGENE software.	de Sa PHCG, Castro Alves JT, Veras AAO.	STAR Protoc	10.1016/j.xpro.2022.101327	2022
	The Role of Probiotics in Modulating the Gut Microbiome in Alzheimer's Disease: A Review.	Dong Y, Wu X, Zhang Y, Hu A, Zhou Q, Yue X, Liu Z, Li M.	Foods	10.3390/foods14091531	2025
	Safety and Effect of a Low- and High-Dose Multi-Strain Probiotic Supplement on Microbiota in a General Adult Population: A Randomized, Double-Blind, Placebo-Controlled Study.	Tremblay A, Fatani A, Ford AL, Piano A, Nagulesapillai V, Auger J, MacPherson CW, Christman MC, Tompkins TA, Dahl WJ.	J Diet Suppl	10.1080/19390211.2020.1749751	2021
Metabolism	Endocrine-targeting therapies shift the breast microbiome to reduce estrogen receptor-alpha breast cancer risk.	Arnone AA, Tsai YT, Cline JM, Wilson AS, Westwood B, Seger ME, Chiba A, Howard-McNatt M, Levine EA, Thomas A, Soto-Pantoja DR, Cook KL.	Cell Rep Med	10.1016/j.xcrm.2024.101880	2025
Genetics	Mendelian randomization analyses support causal relationships between gut microbiome and longevity.	Chen S, Chen W, Wang X, Liu S.	J Transl Med	10.1186/s12967-024-05823-2	2024
	Behind-the-Scenes Actors in Fertility: A Comprehensive Review of the Female Reproductive Tract Microbiome and Its Clinical Relevance.	Papakonstantinou A, Moustakli E, Potiris A, Zikopoulos A, Tsarna E, Christodoulaki C, Tsakiridis I, Dagklis T, Panagopoulos P, Drakakis P, Stavros S.	Life (Basel)	10.3390/life15060916	2025
	Safety and efficacy of a defined bacterial consortium, VE303, to treat HE.	Bloom PP, Bassis CM, Crossette E, Silber JL, Norman JM, Young VB, Lok ASF.	Hepatol Commun	10.1097/hc9.0000000000000650	2025
	Enteral supplementation with probiotics in preterm infants: A retrospective cohort study and 6-year follow-up.	Brown BE, Huisman E, Miller MR, Ulrich C, Reid G, da Silva O.	Front Nutr	10.3389/fnut.2022.1063121	2022
	Insights into the vaginal microbiome in a diverse group of women of African, Asian and European ancestries.	Roachford OSE, Alleyne AT, Nelson KE.	PeerJ	10.7717/peerj.14449	2022
	Effect of Lactobacillus rhamnosus AB-GG combined with phototherapy on neonatal jaundice indicators, intestinal microbiota and metabolism.	Yuan Y, Chen J, Liu T, Chen J, Zhang F, Shi Z, Zhang J.	Front Nutr	10.3389/fnut.2025.1581242	2025
	Molecular identification of lactic acid bacteria SR6 strain and evaluation of its activity as an anticancer in T47D cell line.	Swacita IBN, Suardana IW, Sudisma IGN, Wihadmadyatami H.	Vet World	10.14202/vetworld.2022.1583-1588	2022
	Identification of Lactobacillus Strains Capable of Fermenting Fructo-Oligosaccharides and Inulin.	Renye JA, White AK, Hotchkiss AT.	Microorganisms	10.3390/microorganisms9102020	2021
	Exploring the genomic traits of infant-associated microbiota members from a Zimbabwean cohort.	Mudhluli TE, Kujawska M, Mueller J, Felsl A, Truppel BA, Hall LJ, Chitsike I, Gomo E, Zhou DT.	BMC Genomics	10.1186/s12864-024-10618-2	2024
	Vaginal Bifidobacterium breve for preventing urogenital infections: Development of delayed release mucoadhesive oral tablets.	Giordani B, Melgoza LM, Parolin C, Foschi C, Marangoni A, Abruzzo A, Dalena F, Cerchiara T, Bigucci F, Luppi B, Vitali B.	Int J Pharm	10.1016/j.ijpharm.2018.09.003	2018
	Exclusive breastfeeding is associated with the gut microbiome maturation in infants according to delivery mode.	Naspolini NF, Schuroff PA, Vanzele PAR, Pereira-Santos D, Valim TA, Bonham KS, Fujita A, Passos-Bueno MR, Beltrao-Braga PCB, Carvalho ACPLF, Klepac-Ceraj V, Polanczyk GV, Campos AC, Taddei CR.	Gut Microbes	10.1080/19490976.2025.2493900	2025
Genetics	Neonatal microbiome dysbiosis decoded by mNGS: from mechanistic insights to precision interventions.	Huang F, Li J, Liu D, Li Y, Tang J.	Front Cell Infect Microbiol	10.3389/fcimb.2025.1642072	2025
	Levofloxacin prophylaxis and parenteral nutrition have a detrimental effect on intestinal microbial networks in pediatric patients undergoing HSCT.	Fabbrini M, D'Amico F, Leardini D, Muratore E, Barone M, Belotti T, Forchielli ML, Zama D, Pession A, Prete A, Brigidi P, Rampelli S, Candela M, Turroni S, Masetti R.	Commun Biol	10.1038/s42003-023-04436-7	2023
	Assessing the Influence of Stimulatory Feeding of Bee Colonies on Mineral Composition and Antioxidant Activity of Bee Venom.	Rasinar AD, Radulov I, Berbecea A, Floares Oarga D, Vicar N, Simiz E, Dragomirescu M, Patruica S.	Insects	10.3390/insects16040423	2025
Metabolism	Two extracellular sialidases from Bifidobacterium bifidum promote the degradation of sialyl-oligosaccharides and support the growth of Bifidobacterium breve.	Nishiyama K, Nagai A, Uribayashi K, Yamamoto Y, Mukai T, Okada N.	Anaerobe	10.1016/j.anaerobe.2018.05.007	2018
	Microbiome in Rheumatoid Arthritis and Celiac Disease: A Friend or Foe.	Elsouri K, Arboleda V, Heiser S, Kesselman MM, Demory Beckler M.	Cureus	10.7759/cureus.15543	2021
	Investigating bifidobacteria and human milk oligosaccharide composition of lactating mothers.	Lugli GA, Duranti S, Milani C, Mancabelli L, Turroni F, Alessandri G, Longhi G, Anzalone R, Viappinai A, Tarracchini C, Bernasconi S, Yonemitsu C, Bode L, Goran MI, Ossiprandi MC, van Sinderen D, Ventura M.	FEMS Microbiol Ecol	10.1093/femsec/fiaa049	2020
	Single-Scaffold Genome Sequence of Probiotic Strain Bifidobacterium breve BR03 (DSM 16604), Obtained by Combining Hybrid Sequencing and Optical Mapping.	Fracchetti F, Del Casale A, Tebaldi M, Cunego A, Campedelli I, Salvetti E, Ederle D, Deidda F, Pane M.	Microbiol Resour Announc	10.1128/mra.00241-19	2019
	Adjudicative efficacy of Bifidobacterium animalis subsp. lactis BLa80 in treating acute diarrhea in children: a randomized, double-blinded, placebo-controlled study.	Chen K, Jin S, Ma Y, Cai L, Xu P, Nie Y, Luo L, Yu Q, Shen Y, Zhou Z, Liu C.	Eur J Clin Nutr	10.1038/s41430-024-01428-6	2024
	Effect of gut microbiota changes on cytokines IL-10 and IL-17 levels in liver transplantation patients.	Abdel-Raoof Fouda M, Abdel-Wahhab M, Abdelkader AE, Ibrahim ME, Elsheikh TA, Aldeweik HM, Elfeky N.	BMC Infect Dis	10.1186/s12879-025-10466-9	2025
	Resilience to Global Health Challenges Through Nutritional Gut Microbiome Modulation.	Isolauri E, Laitinen K.	Nutrients	10.3390/nu17030396	2025
	Assessing synergistic effect of Jerusalem Artichoke juice and antioxidant compounds on enhanced viability and persistence of Bifidobacterium species, palatability, and shelf life.	Alsharafani MAM, Abdullah T, Jabur ZA, Hassan AA, Alhendi AS, Abdulmawjood A, Khan IUH.	Food Sci Nutr	10.1002/fsn3.2815	2022
	Functional Foods Based on Postbiotics as a Food Allergy Treatment.	Khani N, Shirkhan F, Ashkezary MR, Sarabi Aghdam V, Soleimani RA, Shokouhian SMJ, Hosseinzadeh N, Homayouni-Rad A.	Foods	10.3390/foods14203584	2025
Pathogenicity	Effects of a probiotic intervention on Escherichia coli and high-fat diet-induced intestinal microbiota imbalance.	Sun Q, Zhang S, Liu X, Huo Y, Su B, Li X.	Appl Microbiol Biotechnol	10.1007/s00253-019-10304-4	2020
	Characterization of CRISPR-Cas systems in Bifidobacterium breve.	Han X, Zhou X, Pei Z, Stanton C, Ross RP, Zhao J, Zhang H, Yang B, Chen W.	Microb Genom	10.1099/mgen.0.000812	2022
Pathogenicity	Bacillus licheniformis Alleviates Clostridium perfringens-Induced Intestinal Injury in Mice Model by Modulating Inflammation, Apoptosis, and Cecal Microbial-Metabolic Responses.	Zhong Y, Zhang M, Xu H, Yu X, Hu Y, Xu Y, Xiao X, Yang C.	Animals (Basel)	10.3390/ani15101409	2025
	Preventive Effect of Probiotic Leuconostoc mesenteroides H40 Against Cognitive Disorder by Anti-Inflammatory, Synaptic Plasticity Regulation, and Antioxidant Effects.	Lee NK, Lee Y, Won M, Kim N, Park E, Paik HD.	Antioxidants (Basel)	10.3390/antiox14050565	2025
	Synbiotic containing extensively hydrolyzed formula improves gastrointestinal and atopic symptom severity, growth, caregiver quality of life, and hospital-related healthcare use in infants with cow's milk allergy.	Hubbard GP, Atwal K, Graham L, Narayanan S, Cooke L, Casewell C, Denton SA, Gavin J, Browne RM, Kinnear FJ, McHardy AJ, Evans D, Vallis R, Venkataraman D, Cawood AL, Donohoe S, Steele V, Armstrong S, Stratton RJ.	Immun Inflamm Dis	10.1002/iid3.636	2022
	Molecular Mechanism and Clinical Effects of Probiotics in the Management of Cow's Milk Protein Allergy.	Cela L, Brindisi G, Gravina A, Pastore F, Semeraro A, Bringheli I, Marchetti L, Morelli R, Cinicola B, Capponi M, Gori A, Pignataro E, Piccioni MG, Zicari AM, Anania C.	Int J Mol Sci	10.3390/ijms24129781	2023
	Bifidobacterium breve Alleviates DSS-Induced Colitis in Mice by Maintaining the Mucosal and Epithelial Barriers and Modulating Gut Microbes.	Niu MM, Guo HX, Cai JW, Meng XC.	Nutrients	10.3390/nu14183671	2022
	Microbiota Stability and Gastrointestinal Tolerance in Response to a High-Protein Diet with and without a Prebiotic, Probiotic, and Synbiotic: A Randomized, Double-Blind, Placebo-Controlled Trial in Older Women.	Ford AL, Nagulesapillai V, Piano A, Auger J, Girard SA, Christman M, Tompkins TA, Dahl WJ.	J Acad Nutr Diet	10.1016/j.jand.2019.12.009	2020
Pathogenicity	Bifidobacterium animalis Subsp. lactis PB200 Improves Intestinal Barrier Function and Flora Disturbance in Mice with Antibiotic-Induced Intestinal Injury.	Wang G, Gong H, Zou Y, Zhang H, Mao X.	Nutrients	10.3390/nu17101610	2025
	Marking the Profile of the Microflora of the Endometrium and Uterine Cervix in Women as a Potential Factor Determining the Effectiveness of In Vitro Fertilization.	Bednarska-Czerwinska A, Czerwinski M, Czerwinski M, Morawiec E, Lach A, Ziaja A, Kusaj A, Straczynska P, Sagan D, Boron D, Grabarek BO.	J Clin Med	10.3390/jcm11123348	2022
	Impact of Probiotics Administration on the VEGF, Adiponectin, and Glycolipid Metabolism, in Prediabetic Patients: A Randomized, Double-Blinded, Placebo-Controlled Clinical Trial.	Sarabi M, Torshizian A, Khorasani ZM, Firoozi A, Majd HM, Khoshhal N, Saeidi N, AkbariRad M.	Food Sci Nutr	10.1002/fsn3.70146	2025
	Millet Fermented by Different Combinations of Yeasts and Lactobacilli: Effects on Phenolic Composition, Starch, Mineral Content and Prebiotic Activity.	Balli D, Cecchi L, Pieraccini G, Venturi M, Galli V, Reggio M, Di Gioia D, Furlanetto S, Orlandini S, Innocenti M, Mulinacci N.	Foods	10.3390/foods12040748	2023
Pathogenicity	Bifidobacteriumbreve Bif195 Protects Against Small-Intestinal Damage Caused by Acetylsalicylic Acid in Healthy Volunteers.	Mortensen B, Murphy C, O'Grady J, Lucey M, Elsafi G, Barry L, Westphal V, Wellejus A, Lukjancenko O, Eklund AC, Nielsen HB, Baker A, Damholt A, van Hylckama Vlieg JET, Shanahan F, Buckley M.	Gastroenterology	10.1053/j.gastro.2019.05.008	2019
Metabolism	Impact of milk secretor status on the fecal metabolome and microbiota of breastfed infants.	Wang A, Diana A, Rahmannia S, Gibson RS, Houghton LA, Slupsky CM.	Gut Microbes	10.1080/19490976.2023.2257273	2023
	Clinical Outcomes of Single vs. Two-Strain Probiotic Prophylaxis for Prevention of Necrotizing Enterocolitis in Preterm Infants.	Priyadarshi A, Lowe G, Saddi V, Trivedi A, Luig M, Tracy M.	Front Pediatr	10.3389/fped.2021.729535	2021
	Postnatal probiotic supplementation can prevent and optimize treatment of childhood asthma and atopic disorders: A systematic review of randomized controlled trials.	Uwaezuoke SN, Ayuk AC, Eze JN, Odimegwu CL, Ndiokwelu CO, Eze IC.	Front Pediatr	10.3389/fped.2022.956141	2022
	Mucosal Microbiome Markers of Complete Pathologic Response to Neoadjuvant Therapy in Rectal Carcinoma.	Abukhiran IM, Masaadeh AH, Byrne JD, Bosch DE.	Cancer Res Commun	10.1158/2767-9764.crc-25-0036	2025
	Bifidobacterium breve MCC1274 Supplementation Increased the Plasma Levels of Metabolites with Potential Anti-Oxidative Activity in APP Knock-In Mice.	Ohno K, Abdelhamid M, Zhou C, Jung CG, Michikawa M.	J Alzheimers Dis	10.3233/jad-220479	2022
	Maternal breastfeeding is associated with offspring microbiome diversity; a secondary analysis of the MicrobeMom randomized control trial.	Yelverton CA, Killeen SL, Feehily C, Moore RL, Callaghan SL, Geraghty AA, Byrne DF, Walsh CJ, Lawton EM, Murphy EF, Van Sinderen D, Cotter PD, McAuliffe FM.	Front Microbiol	10.3389/fmicb.2023.1154114	2023
	The Application of Multiple Strategies to Enhance Methylparaben Synthesis Using the Engineered Saccharomyces cerevisiae.	Liu L, Wang K, Liu P, Ba L, Liu H, Liu Y.	Biology (Basel)	10.3390/biology14050469	2025
	Analysis of the effect of phototherapy on intestinal probiotics and metabolism in newborns with jaundice.	Fan S, Zhang K, Zhang J, Zhang L, Liu L, Lv A, Ma Y, Fang X, Zheng F, Wu Z, Zhang J.	Front Pediatr	10.3389/fped.2022.878473	2022
	Extraction of the same novel homoglycan mixture from two different strains of Bifidobacterium animalis and three strains of Bifidobacterium breve.	Alhudhud M, Sadiq S, Ngo HN, Hidalgo-Cantabrana C, Ruas-Madiedo P, van Sinderen D, Humphreys PN, Laws AP.	Benef Microbes	10.3920/bm2017.0145	2018
	The influence of maternal gut and vaginal microbiota on gastrointestinal colonization of neonates born vaginally and per caesarean section.	Ronde E, Alkema M, Dierikx T, Schoenmakers S, Belzer C, de Meij T.	BMC Pregnancy Childbirth	10.1186/s12884-025-07358-w	2025
	Effects of probiotic supplementation on semen parameters after varicocelectomy: A randomized controlled trial.	Asadi M, Gholipour F, Rahavian A, Javanbakht M.	J Res Med Sci	10.4103/jrms.jrms_392_23	2023
	Supercharged Natural Killer (sNK) Cells Inhibit Melanoma Tumor Progression and Restore Endogenous NK Cell Function in Humanized BLT Mice	Kaur K, Topchyan P, Jewett A.	Cancers (Basel)		2025
	Bifidobacterium breve M-16V as a Probiotic for Preterm Infants: A Strain-Specific Systematic Review.	Athalye-Jape G, Rao S, Simmer K, Patole S.	JPEN J Parenter Enteral Nutr	10.1177/0148607117722749	2018
	Akkermansia muciniphila: a microbial guardian against oxidative stress-gut microbiota crosstalk and clinical prospects.	Ye WY, Cai Y.	J Transl Med	10.1186/s12967-025-07149-z	2025
Pathogenicity	A synbiotic mixture of scGOS/lcFOS and Bifidobacterium breve M-16V increases faecal Bifidobacterium in healthy young children.	Kosuwon P, Lao-Araya M, Uthaisangsook S, Lay C, Bindels J, Knol J, Chatchatee P.	Benef Microbes	10.3920/bm2017.0110	2018
	The Relationship Between Gut Microbiota, Muscle Mass and Physical Function in Older Individuals: A Systematic Review.	Barry DJ, Wu SSX, Cooke MB.	Nutrients	10.3390/nu17010081	2024
	Effects of specific symbiotic supplements on anthropometric measurements, glycaemic control, and lipid profiles among individuals with type 2 diabetes mellitus in two teaching hospitals in Baghdad/Iraq: a double-blinded, randomised placebo-controlled trial.	Zalzala SHA, Al-Hashimi BAS, Zalzala ZHA, Fahad KS.	BMC Nutr	10.1186/s40795-024-00976-1	2024
	Probiotics as a Tool for Regulating Molecular Mechanisms in Depression: A Systematic Review and Meta-Analysis of Randomized Clinical Trials.	Sikorska M, Antosik-Wojcinska AZ, Dominiak M.	Int J Mol Sci	10.3390/ijms24043081	2023
	The Effect of Probiotics on Headaches in Children with Migraine Treated with Sodium Valproate: A Randomized Controlled Clinical Trial.	Bidabadi E, Elyasi M, Hassanzadeh Rad A, Kazemnezhad E.	Iran J Child Neurol	10.22037/ijcn.v17i2.40369	2023
Pathogenicity	Neonates exposed to HIV but uninfected exhibit an altered gut microbiota and inflammation associated with impaired breast milk antibody function.	Byrne A, Diener C, Brown BP, Maust BS, Feng C, Alinde BL, Gibbons SM, Koch M, Gray CM, Jaspan HB, Nyangahu DD.	Microbiome	10.1186/s40168-024-01973-z	2024
	Metabolic engineering of Saccharomyces cerevisiae for de novo biosynthesis of hydroxytyrosol and salidroside.	Sun J, Zhu L, Duan L, Li F, Guo S, Bian J, Yang L.	Appl Environ Microbiol	10.1128/aem.00712-25	2025
Metabolism	The Effects of Novel Co-Amorphous Naringenin and Fisetin Compounds on a Diet-Induced Obesity Murine Model.	Vasquez-Reyes S, Bernal-Gamez M, Dominguez-Chavez J, Mondragon-Vasquez K, Sanchez-Tapia M, Ordaz G, Granados-Portillo O, Coutino-Hernandez D, Barrera-Gomez P, Torres N, Tovar AR.	Nutrients	10.3390/nu16244425	2024
Metabolism	Microbiota dysbiosis impact on the metabolism of T3 and T4 hormones and its association with thyroid cancer.	Cadena-Ullauri S, Guevara-Ramirez P, Paz-Cruz E, Ruiz-Pozo VA, Tamayo-Trujillo R, Zambrano AK.	Front Cell Dev Biol	10.3389/fcell.2025.1589726	2025
	The Impact of Weizmannia coagulans BC99 on Anxiety and Depression: An 8-Week Clinical Pilot Study Through the Gut Microbiota-Brain Axis.	Tie S, Pan Y, Pang C, Saman A, Dong Y, Fang S, Zhu J, Wu Y, Gu S.	Nutrients	10.3390/nu17193087	2025
	Evaluating the safety and functionality of a novel compound containing prebiotics, probiotics, and postbiotics in healthy cats and dogs.	Onuma M, Ataka K, Murakami A.	Open Vet J	10.5455/ovj.2025.v15.i5.11	2025
	Microbiome-Based Products: Therapeutic Potential for Inflammatory Skin Diseases.	Rusanac A, Skibola Z, Matijasic M, Cipcic Paljetak H, Peric M.	Int J Mol Sci	10.3390/ijms26146745	2025
	Efficacy of Probiotics in Management of Celiac Disease.	Ali B, Khan AR.	Cureus	10.7759/cureus.22031	2022
	Bifidobacterium animalis subsp. lactis TISTR 2591 Improves Glycemic Control and Immune Response in Adults with Type 2 Diabetes Mellitus: A Randomized, Double-Blind, Placebo-Controlled Crossover Clinical Trial.	Khiaolaongam W, Boonyapranai K, Sitdhipol J, Thaveethaptaikul P, Khongrum J, Chonpathompikunlert P, Ounjaijean S.	Nutrients	10.3390/nu17193097	2025
	Comparison of the Gut Microbiota of Patients Who Improve with Antibiotic Combination Therapy for Ulcerative Colitis and Those Who Do Not: Investigation by Fecal Metagenomic Analyses.	Ohkusa T, Kato K, Sekizuka T, Sugiyama T, Sato N, Kuroda M.	Nutrients	10.3390/nu16203500	2024
Genetics	Reference-guided assembly of metagenomes with MetaCompass.	Luan T, Cepeda-Espinoza VP, Liu B, Bowen Z, Ayyangar U, Almeida M, Koren S, Treangen TJ, Porter A, Pop M.	Cell Rep Methods	10.1016/j.crmeth.2025.101186	2025
	Innate immune response of mammary gland induced by intramammary infusion of Bifidobacterium breve in lactating dairy cows.	Nagahata H, Moriyama A, Sawada C, Asai Y, Kokubu C, Gondaira S, Higuchi H.	J Vet Med Sci	10.1292/jvms.20-0273	2020
	Gut microbiota and sepsis-associated encephalopathy: pathogenesis and precision therapies.	Wei N, Dai S, Li W, Zhou J, Chen Y.	Front Neurosci	10.3389/fnins.2025.1596467	2025
	Design and characterization of a novel lytic protein against Clostridium difficile.	Wang M, Deng Z, Li Y, Ma Y, Wang J.	Appl Microbiol Biotechnol	10.1007/s00253-022-12010-0	2022
	Fecal Microbiota Transplantation Induces Sustained Gut Microbiome Changes in Pediatric Ulcerative Colitis: A Combined Randomized and Open-Label Study.	Le J, Hakimjavadi H, Parsana R, Chamala S, Michail S.	Gastro Hep Adv	10.1016/j.gastha.2025.100741	2025
	Stress Effect of Food Matrices on Viability of Probiotic Cells during Model Digestion.	Matouskova P, Hoova J, Rysavka P, Marova I.	Microorganisms	10.3390/microorganisms9081625	2021
Pathogenicity	Possible modulating functions of probiotic Lactiplantibacillus plantarum in particulate matter-associated pulmonary inflammation.	Gupta N, Abd El-Gawaad NS, Osman Abdallah SA, Al-Dossari M.	Front Cell Infect Microbiol	10.3389/fcimb.2023.1290914	2023
Pathogenicity	The Beneficial Effects of Probiotics via Autophagy: A Systematic Review.	Nemati M, Omrani GR, Ebrahimi B, Montazeri-Najafabady N.	Biomed Res Int	10.1155/2021/2931580	2021
	How Microbiomes Affect Skin Aging: The Updated Evidence and Current Perspectives.	Ratanapokasatit Y, Laisuan W, Rattananukrom T, Petchlorlian A, Thaipisuttikul I, Sompornrattanaphan M.	Life (Basel)	10.3390/life12070936	2022
	Synergistic effects of Chinese herbal formula combined with Microcin J25 against Escherichia coli and Salmonella in calf diarrhea and clinical evaluation of preventive and therapeutic effects in the Ningxia region.	Ding DZ, Zhu LX, Shao Q, Li X, Tong YC, Zhang W, Fan YP, Yang Q, Wang FJ, Qing SZ, Zhang WM.	Front Vet Sci	10.3389/fvets.2025.1619420	2025
Pathogenicity	Synbiotics Combined with Glutamine Stimulate Brain Development and the Immune System in Preterm Pigs.	Andersen AD, Nguyen DN, Langhorn L, Renes IB, van Elburg RM, Hartog A, Tims S, van de Looij Y, Sangild PT, Thymann T.	J Nutr	10.1093/jn/nxy243	2019
	Bifidobacterium breve IPLA20005 affects in vitro the expression of hly and luxS genes, related to the virulence of Listeria monocytogenes Lm23.	Rios-Covian D, Nogacka A, Salazar N, Hernandez-Barranco AM, Cuesta I, Gueimonde M, de Los Reyes Gavilan CG.	Can J Microbiol	10.1139/cjm-2017-0625	2018
Pathogenicity	Administration of Bifidobacterium breve Improves the Brain Function of Abeta_1-42-Treated Mice via the Modulation of the Gut Microbiome.	Zhu G, Zhao J, Zhang H, Chen W, Wang G.	Nutrients	10.3390/nu13051602	2021
	Effects of Probiotics as Adjunctive Therapy to Fluoxetine on Depression Severity and Serum Brain-Derived Neurotrophic Factor, Cortisol, and Adrenocorticotropic Hormone in Patients With Major Depressive Disorder: A Randomized, Double-Blind, Placebo-Controlled Trial.	Elahinejad V, Khorasanian AS, Tehrani-Doost M, Khosravi-Darani K, Mirsepasi Z, Effatpanah M, Askari-Rabori R, Tajadod S, Jazayeri S.	Food Sci Nutr	10.1002/fsn3.4698	2025
	The Canadian Network for Mood and Anxiety Treatments Task Force Recommendations for the Use of Probiotics, Prebiotics, Synbiotics, and Fecal Microbiota Transplants in Adults With Major Depressive Disorder: Recommandations du Groupe de travail du Réseau canadien pour le traitement des troubles de l'humeur et de l'anxiété (Canadian Network for Mood and Anxiety Treatments, CANMAT) concernant l'utilisation des probiotiques, des prébiotiques, des symbiotiques et de la transplantation de microbiote fécal chez les adultes atteints de trouble dépressif majeur.	Bahji A, Brietzke E, Cooke NCA, Clement F, Frey BN, Hofmeister M, Kennedy SH, Lam R, Milev R, Moinul D, Parikh SV, Patten S, Ravindran A, Rosenblat JD, Samaan Z, Schaffer A, Saleem A, Beaulieu S, Tourjman V, Van Ameringen M, Vigod S, Yatham L, Taylor V, Canadian Network for Mood and Anxiety Treatments (CANMAT) Taskforce.	Can J Psychiatry	10.1177/07067437251394363	2025
	Temporal characterization of the gut microbiome and metabolome in preterm infants.	Beck LC, Sproat T, Lamb CA, Filby A, McDonald D, Masi AC, Young GR, Hambleton S, Embleton ND, Stewart CJ, Berrington JE.	Microb Genom	10.1099/mgen.0.001440	2025
Metabolism	A Pomegranate Polyphenol Extract Suppresses the Microbial Production of Proatherogenic Trimethylamine (TMA) in an In Vitro Human Colon Model.	Haarhuis JE, Day-Walsh P, Shehata E, Savva GM, Peck B, Philo M, Kroon PA.	Mol Nutr Food Res	10.1002/mnfr.70166	2025
	Exploring the Ecological Effects of Naturally Antibiotic-Insensitive Bifidobacteria in the Recovery of the Resilience of the Gut Microbiota during and after Antibiotic Treatment.	Argentini C, Mancabelli L, Alessandri G, Tarracchini C, Barbetti M, Carnevali L, Longhi G, Viappiani A, Anzalone R, Milani C, Sgoifo A, van Sinderen D, Ventura M, Turroni F.	Appl Environ Microbiol	10.1128/aem.00522-22	2022
	Metabolic reprogramming and computation-aided protein engineering for high-level de novo biosynthesis for 2-phenylethanol in Pichia pastoris.	Sun L, Liu S, Sun R, Li J, Yu A, Wong A, Lin L, Zhang C.	Synth Syst Biotechnol	10.1016/j.synbio.2025.05.004	2025
	The Influence of Probiotic Lactobacilli on COVID-19 and the Microbiota.	Taufer CR, da Silva J, Rampelotto PH.	Nutrients	10.3390/nu16091350	2024
Pathogenicity	A novel probiotic formula, BLLL, ameliorates chronic stress-induced depression-like behaviors in mice by reducing neuroinflammation and increasing neurotrophic factors.	Ye M, Ji F, Huang C, Li F, Zhang C, Zhang Y, Wang R, Ma K, Lu X, Wang H.	Front Pharmacol	10.3389/fphar.2024.1398292	2024
	Enduring Behavioral Effects Induced by Birth by Caesarean Section in the Mouse.	Morais LH, Golubeva AV, Moloney GM, Moya-Perez A, Ventura-Silva AP, Arboleya S, Bastiaanssen TFS, O'Sullivan O, Rea K, Borre Y, Scott KA, Patterson E, Cherry P, Stilling R, Hoban AE, El Aidy S, Sequeira AM, Beers S, Moloney RD, Renes IB, Wang S, Knol J, Ross RP, O'Toole PW, Cotter PD, Stanton C, Dinan TG, Cryan JF.	Curr Biol	10.1016/j.cub.2020.07.044	2020
	Beginning to offer drinking water at birth increases the species richness and the abundance of Faecalibacterium and Bifidobacterium in the gut of preweaned dairy calves.	Wickramasinghe HKJP, Anast JM, Schmitz-Esser S, Serao NVL, Appuhamy JADRN.	J Dairy Sci	10.3168/jds.2019-17258	2020
	An optimized culturomics strategy for isolation of human milk microbiota.	Wang F, Yu L, Ren Y, Zhang Q, He S, Zhao M, He Z, Gao Q, Chen J.	Front Microbiol	10.3389/fmicb.2024.1272062	2024
	Gut Microbiome Composition and Metabolic Capacity Differ by FUT2 Secretor Status in Exclusively Breastfed Infants.	Thorman AW, Adkins G, Conrey SC, Burrell AR, Yu Y, White B, Burke R, Haslam D, Payne DC, Staat MA, Morrow AL, Newburg DS.	Nutrients	10.3390/nu15020471	2023
Pathogenicity	The effects of synbiotic supplementation along with non-surgical periodontal therapy in improving the metabolic status and inflammatory markers in type 2 diabetes mellitus patients with periodontal disease: A double-blind randomized clinical trial.	Yarahmadi M, Javid AZ, Bazyar H, Yousefimanesh HA, Nejatian T, Gravand E, Haghighizade MH.	J Educ Health Promot	10.4103/jehp.jehp_1382_23	2024
	Identification of genes involved in galactooligosaccharide utilization in Bifidobacterium breve strain YIT 4014^T.	Sotoya H, Shigehisa A, Hara T, Matsumoto H, Hatano H, Matsuki T.	Microbiology (Reading)	10.1099/mic.0.000517	2017
	Bifidobacterial strains shared by mother and child as source of probiotics.	Peiroten A, Arques JL, Medina M, Rodriguez-Minguez E.	Benef Microbes	10.3920/bm2017.0133	2018
Metabolism	LC-Q-TOF/MS-oriented systemic metabolism study of pedunculoside with in vitro and in vivo biotransformation.	Wu L, Kang A, Shan C, Chai C, Zhou Z, Lin Y, Bian Y.	J Pharm Biomed Anal	10.1016/j.jpba.2019.07.010	2019
	Species-level enumeration of low-concentration lactic acid bacteria in breast milk.	Sun Y, Li Q, Hu M, Wu Y, Wa Y, Lu H, Jiang S, Wang H, Wei Q, Huang Y, Gu R, Zhang C.	Food Chem (Oxf)	10.1016/j.fochms.2025.100269	2025
	Saccharomyces boulardii and Bifidobacterium co-treatment for antibiotic associated diarrhea in pediatrics: a multicenter efficacy and safety study.	Liu Q, Liu L, Zhou J, Duan Y, Shi C, Zeng Y.	Front Cell Infect Microbiol	10.3389/fcimb.2025.1575605	2025
	Multi-strain probiotics during pregnancy in women with obesity influence infant gut microbiome development: results from a randomized, double-blind placebo-controlled study.	Halkjaer SI, Refslund Danielsen M, de Knegt VE, Andersen LO, Stensvold CR, Nielsen HV, Mirsepasi-Lauridsen HC, Krogfelt KA, Cortes D, Petersen AM.	Gut Microbes	10.1080/19490976.2024.2337968	2024
	Efficacy of Quadruple-coated Probiotics in Patients With Irritable Bowel Syndrome: A Randomized, Double-blind, Placebo-controlled, Parallel-group Study.	Chang YH, Choi YJ, Shin CM, Moon JS, Kim TY, Yoon H, Park YS, Kim N, Lee DH.	J Neurogastroenterol Motil	10.5056/jnm23036	2024
	Probiotics and gastrointestinal disorders: an umbrella meta-analysis of therapeutic efficacy.	Zeng Q, Li P, Wu H, Zhuang Y, Zhang Y, Asemani S, Jamilian P, Jamali M, Yu H.	Eur J Med Res	10.1186/s40001-025-02788-w	2025
	A powerful machine learning approach to identify interactions of differentially abundant gut microbial subsets in patients with metastatic and non-metastatic pancreatic cancer.	Villani A, Fontana A, Panebianco C, Ferro C, Copetti M, Pavlovic R, Drago D, Fiorentini C, Terracciano F, Bazzocchi F, Canistro G, Pisati F, Maiello E, Latiano TP, Perri F, Pazienza V.	Gut Microbes	10.1080/19490976.2024.2375483	2024
	Generation of novel prebiotic oligosaccharide pools from fiber drives biological insight in bacterial glycan metabolism.	Masarweh C, Maldonado-Gomez M, Paviani B, Bhattacharya M, Weng C-Y, Suarez C, Ehlers-Cheang S, Stacy A, Castillo J, Krishnakumar N, Kalanetra KA, Barile D, German JB, Lebrilla CB, Mills DA.	Appl Environ Microbiol	10.1128/aem.02077-24	2025
	The Promising Role of Probiotics in the Prevention of Cardiovascular Risk Factors and Their Implication in Reducing Coronary Artery Disease: A Literature Review.	Hashish R, Agha Tabari K, Swami SS, Kasagga A, Assefa AK, Amin MN, Yu AK.	Cureus	10.7759/cureus.86292	2025
	The role of probiotics in the immune response and intestinal microbiota of children with celiac disease: a systematic review.	Jedwab CF, Roston BCMB, Toge ABFS, Echeverria IF, Tavares GOG, Alvares MA, Rullo VEV, Oliveira MRM.	Rev Paul Pediatr	10.1590/1984-0462/2022/40/2020447	2021
Metabolism	Lactobacillus fermentum 016 Alleviates Mice Colitis by Modulating Oxidative Stress, Gut Microbiota, and Microbial Metabolism.	Pan H, Yang S, Kulyar MF, Ma H, Li K, Zhang L, Mo Q, Li J.	Nutrients	10.3390/nu17030452	2025
	Effect of multi-strain bifidobacteria supplementation on intestinal microbiota development in low birth weight neonates: a randomized controlled trial.	Takeshita K, Takei H, Tanaka S, Hishiki H, Iijima Y, Ogata H, Fujishiro K, Tominaga T, Konno Y, Iwase Y, Endo M, Ishiwada N, Osone Y, Takemura R, Hamada H, Shimojo N.	Biosci Microbiota Food Health	10.12938/bmfh.2023-093	2024
	In Vitro and In Vivo Study of Combined Effect of Some Algerian Medicinal Plants and Probiotics against Helicobacter pylori.	Hasna B, Houari H, Koula D, Marina S, Emilia U, Assia B.	Microorganisms	10.3390/microorganisms11051242	2023
Enzymology	Degradation of food-derived opioid peptides by bifidobacteria.	Sakurai T, Yamada A, Hashikura N, Odamaki T, Xiao JZ.	Benef Microbes	10.3920/bm2017.0165	2018
Pathogenicity	The gut microbiota modulates airway inflammation in allergic asthma through the gut-lung axis related immune modulation: A review.	Zhang M, Qin Z, Huang C, Liang B, Zhang X, Sun W.	Biomol Biomed	10.17305/bb.2024.11280	2025
	A triad of gut dysbiosis, dysregulated immunity, and 'leaky' gut characterize HCMV associated neonatal cholestasis.	Karandikar K, Bhonde G, Palav H, Padwal V, Velhal S, Pereira J, Meshram H, Goel A, Shah I, Patel V, Bhor VM.	Gut Pathog	10.1186/s13099-024-00663-3	2024
	Effects of Lactobacillus salivarius ssp. salicinius SA-03 Supplementation on Reversing Phthalate-Induced Asthma in Mice.	Lin TJ, Huang CC, Lee MC, Lee YP, Huang WC, Chuang HL, Wang IJ.	Nutrients	10.3390/nu16081160	2024
Pathogenicity	Gut Microbiome Dysbiosis and Its Impact on Reproductive Health: Mechanisms and Clinical Applications.	Moustakli E, Stavros S, Katopodis P, Potiris A, Drakakis P, Dafopoulos S, Zachariou A, Dafopoulos K, Zikopoulos K, Zikopoulos A.	Metabolites	10.3390/metabo15060390	2025
Metabolism	Gut Microbiota and Tryptophan Metabolism as Therapeutic Targets for Spinal Cord Injury: Insights From Probiotic Treatment.	Dong J, Xu C, Jin S, Xie T, Xu Z, Hao D, Dong L.	J Inflamm Res	10.2147/jir.s513900	2025
	Monocyte-Platelet Aggregates Are Major Source of BDNF after Bacterial Stimulation of Human Peripheral Blood Immune Cells.	Sarcletti F, Dijmarescu M, Eigenschink M, Wukowits N, Oehler B, Mayer T, Pell S, Tandecki A, Seki D, Spittler A, Berry D, Berger A, Wisgrill L.	Eur J Immunol	10.1002/eji.202451538	2025
Pathogenicity	Challenges of concurrent HIV infection in the course and management of Crohn's disease.	Mattar L, Thalib HI, Alnuwaimi M, Alsaadi H, Allouji HA, Alyafei J, Alshowiman L, Alsobyani N, Hassan FES.	J Med Life	10.25122/jml-2024-0359	2025
Metabolism	Clinical intervention using Bifidobacterium strains in celiac disease children reveals novel microbial modulators of TNF-alpha and short-chain fatty acids.	Primec M, Klemenak M, Di Gioia D, Aloisio I, Bozzi Cionci N, Quagliariello A, Gorenjak M, Micetic-Turk D, Langerholc T.	Clin Nutr	10.1016/j.clnu.2018.06.931	2019
	Probiotics Prevent Hypertension in a Murine Model of Systemic Lupus Erythematosus Induced by Toll-Like Receptor 7 Activation.	de la Visitacion N, Robles-Vera I, Moleon-Moya J, Sanchez M, Jimenez R, Gomez-Guzman M, Gonzalez-Correa C, Olivares M, Toral M, Romero M, Duarte J.	Nutrients	10.3390/nu13082669	2021
	Evaluation of microbiological, antioxidant, thermal, rheological and sensory properties of ice cream fermented with kefir culture and flavored with mint (Menthaspicata L.).	Ozturk-Yalcin F, Urkek B, Sengul M.	Food Sci Nutr	10.1002/fsn3.4355	2024
Pathogenicity	Alleviation of Immobilization Stress or Fecal Microbiota-Induced Insomnia and Depression-like Behaviors in Mice by Lactobacillus plantarum and Its Supplement.	Lee DY, Baek JS, Shin YJ, Kim DH.	Nutrients	10.3390/nu16213711	2024
	The Impact of Fermented Milk Products Containing Bifidobacterium longum BB536 on the Gut Environment: A Randomized Double-Blind Placebo-Controlled Trial.	Ejima R, Mishima R, Sen A, Yamaguchi K, Mitsuyama E, Kaneko H, Kimura M, Arai S, Muto N, Hiraku A, Kato K, Kuwano Y, Maruyama H, Nakamura M, Iwabuchi N, Nakano M, Odamaki T, Tanaka M.	Nutrients	10.3390/nu16213580	2024
	Bifidobacterium breve as a delivery vector of IL-24 gene therapy for head and neck squamous cell carcinoma in vivo.	Wang L, Vuletic I, Deng D, Crielaard W, Xie Z, Zhou K, Zhang J, Sun H, Ren Q, Guo C.	Gene Ther	10.1038/gt.2017.74	2017
	Feeding Expressed Breast Milk Alters the Microbial Network of Breast Milk and Increases Breast Milk Microbiome Diversity over Time.	Woortman MA, Barrett ES, O'Connor TG, Gill SR, Scheible K, Brunner J, Sun H, Dominguez-Bello MG.	Microorganisms	10.3390/microorganisms13010012	2024
	Efficacy of Bifidobacterium longum and Lactobacillus plantarum (NVP-1703) in Children With Allergic Rhinitis: A Randomized Controlled Trial.	Jeong K, Jang SW, Jeon SA, Seo HJ, Kang SH, Han SW, Suh DI, Lee S.	J Korean Med Sci	10.3346/jkms.2024.39.e266	2024
	Bioconversion of Fe₃O₄ Nanoparticles by Probiotics.	Ciont C, Mesaros A, Cocean AM, Varvara RA, Simon E, Barbu-Tudoran L, Ranga F, Teleky BE, Mitrea L, Vodnar DC, Pop OL.	Pharmaceuticals (Basel)	10.3390/ph18040542	2025
Pathogenicity	Effect of probiotics on C-reactive protein levels in preterm infants: Secondary analysis of a randomized controlled trial.	Agrawal S, Rao S, Nathan EA, Patole S.	J Neonatal Perinatal Med	10.3233/npm-181763	2018
	The Effects of Single Strains and Mixtures of Probiotic Bacteria on Immune Profile in Liver, Spleen, and Peripheral Blood.	Fong FLY, El-Nezami H, Mykkanen O, Kirjavainen PV.	Front Nutr	10.3389/fnut.2022.773298	2022
	In Vitro Comparative Analysis of Probiotic and Functional Attributes of Indigenous Isolates of Bifidobacteria.	Achi SC, Halami PM.	Curr Microbiol	10.1007/s00284-018-1615-9	2019
Pathogenicity	Repurposing the Veterinary Antiprotozoal Drug Ronidazole for the Treatment of Clostridioides difficile Infection.	AbdelKhalek A, Seleem MN.	Int J Antimicrob Agents	10.1016/j.ijantimicag.2020.106188	2020
Genetics	Benchmarking short-read metagenomics tools for removing host contamination.	Gao Y, Luo H, Lyu H, Yang H, Yousuf S, Huang S, Liu YX.	Gigascience	10.1093/gigascience/giaf004	2025
	A Multi-Strain Oral Probiotic Improves the Balance of the Vaginal Microbiota in Women with Asymptomatic Bacterial Vaginosis: Preliminary Evidence.	Filardo S, Di Pietro M, Mastromarino P, Porpora MG, Sessa R.	Nutrients	10.3390/nu16203469	2024
	Isolation and evaluation of Pediococcus acidilactici YH-15 from cat milk: Potential probiotic effects and antimicrobial properties.	Li Y, Zhang Y, Zhao J, Zhang X, Liu S, Qi H, Qiao F, Yao H.	Heliyon	10.1016/j.heliyon.2024.e39539	2024
Pathogenicity	Effects of probiotic and vitamin D co-supplementation on clinical symptoms, mental health, and inflammation in adult patients with migraine headache: a randomized, triple-blinded, placebo-controlled trial.	Tirani SA, Khorvash F, Saneei P, Moradmand Z, Askari G.	BMC Med	10.1186/s12916-024-03684-6	2024
	Dietary amino acids, macronutrients, vaginal birth, and breastfeeding are associated with the vaginal microbiome in early pregnancy.	Corbett GA, Moore R, Feehily C, Killeen SL, O'Brien E, Van Sinderen D, Matthews E, O'Flaherty R, Rudd PM, Saldova R, Walsh CJ, Lawton EM, MacIntyre DA, Corcoran S, Cotter PD, McAuliffe FM.	Microbiol Spectr	10.1128/spectrum.01130-24	2024
	Effect of a Bifidobacterium-Containing Acid-Resistant Microcapsule Formulation on Gut Microbiota: A Pilot Study.	Minami M, Tsuji S, Akagawa S, Akagawa Y, Yoshimoto Y, Kawakami H, Kohno M, Kaneko K.	Nutrients	10.3390/nu14224829	2022
Phylogeny	Vaginal microbiome in early pregnancy and subsequent risk of spontaneous preterm birth: a case-control study.	Tabatabaei N, Eren AM, Barreiro LB, Yotova V, Dumaine A, Allard C, Fraser WD.	BJOG	10.1111/1471-0528.15299	2019
	Fructooligosaccharides for Relieving Functional Constipation: A Systematic Review and Meta-Analysis of Randomized Controlled Trials.	Zhen H, Qian H, Liu X, Tan C.	Foods	10.3390/foods13243993	2024
Phylogeny	Cervicovaginal Microbiome and HPV: A Standardized Approach to 16S/ITS NGS and Microbial Community Profiling for Viral Association	Shen-Gunther J, Xia Q, Cai H, Wang Y.	Int J Mol Sci		2025
	Microbial Diversity and Correlation between Breast Milk and the Infant Gut.	Wang K, Xia X, Sun L, Wang H, Li Q, Yang Z, Ren J.	Foods	10.3390/foods12091740	2023
	Characterization of Extracellular Vesicles from Streptococcus thermophilus 065 and Their Potential to Modulate the Immune Response.	Ortiz Camargo AR, van Mastrigt O, Gouw JW, Liu Y, Bongers RS, van Bergenhenegouwen J, Knol J, Abee T, Smid EJ.	Probiotics Antimicrob Proteins	10.1007/s12602-024-10422-0	2025
	Pre-, pro-, syn-, and Postbiotics in Infant Formulas: What Are the Immune Benefits for Infants?	Lemoine A, Tounian P, Adel-Patient K, Thomas M.	Nutrients	10.3390/nu15051231	2023
	Secretor status is a modifier of vaginal microbiota-associated preterm birth risk.	Kundu S, Dos Santos Correia G, Lee YS, Ng S, Sykes L, Chan D, Lewis H, Brown RG, Kindinger L, Dell A, Feizi T, Haslam SM, Liu Y, Marchesi JR, MacIntyre DA, Bennett PR.	Microb Genom	10.1099/mgen.0.001323	2024
	Health-Improving Effects of Polyphenols on the Human Intestinal Microbiota: A Review.	Nemzer BV, Al-Taher F, Kalita D, Yashin AY, Yashin YI.	Int J Mol Sci	10.3390/ijms26031335	2025
Metabolism	Bifidobacterium breve CNCM I-4035, Lactobacillus paracasei CNCM I-4034 and Lactobacillus rhamnosus CNCM I-4036 Modulate Macrophage Gene Expression and Ameliorate Damage Markers in the Liver of Zucker-Lepr ^fa/fa Rats.	Fontana L, Plaza-Diaz J, Robles-Bolivar P, Valente-Godinez H, Saez-Lara MJ, Abadia-Molina F, Gomez-Llorented C, Gil A, Alvarez-Mercado AI.	Nutrients	10.3390/nu13010202	2021
Pathogenicity	Probiotics-role in alleviating the impact of alcohol liver disease and alcohol deaddiction: a systematic review.	Vidya Bernhardt G, Shivappa P, R Pinto J, Ks R, Ramakrishna Pillai J, Kumar Srinivasamurthy S, Paul Samuel V.	Front Nutr	10.3389/fnut.2024.1372755	2024
	The Relationship between the Infant Gut Microbiota and Allergy. The Role of Bifidobacterium breve and Prebiotic Oligosaccharides in the Activation of Anti-Allergic Mechanisms in Early Life.	Cukrowska B, Bierla JB, Zakrzewska M, Klukowski M, Maciorkowska E.	Nutrients	10.3390/nu12040946	2020
	Genome analysis of Bifidobacterium adolescentis and investigation of its effects on inflammation and intestinal barrier function.	Li B, Wang H, Wang M, Liang H, Hu T, Yang J, Li S, You X, Xia B, Yuan Y, Zou Y, Miao Y, Sun Y.	Front Microbiol	10.3389/fmicb.2024.1496280	2024
Metabolism	The role of gut microbiota and blood metabolites in postpartum depression: a Mendelian randomization analysis.	Cui J, Zhai Q, Yang Z, Liu Y.	Front Cell Infect Microbiol	10.3389/fcimb.2024.1416298	2024
	Hour of Life at Enteral Feeding Initiation and Associated Clinical Morbidity in Extremely Low-Birth-Weight Infants.	Thoene M, Ridgway L, Lyden E, Anderson-Berry A.	Nutrients	10.3390/nu16234041	2024
Enzymology	Bacteremia induced by Bifidobacterium breve in a newborn with cloacal exstrophy.	Sato S, Uchida T, Kuwana S, Sasaki K, Watanabe T, Saito J, Kawaji T.	Pediatr Int	10.1111/ped.13103	2016
	The Impact of Probiotics, Prebiotics, and Synbiotics during Pregnancy or Lactation on the Intestinal Microbiota of Children Born by Cesarean Section: A Systematic Review.	Martin-Pelaez S, Cano-Ibanez N, Pinto-Gallardo M, Amezcua-Prieto C.	Nutrients	10.3390/nu14020341	2022
	An improved temperature-sensitive shuttle vector system for scarless gene deletion in human-gut-associated Bifidobacterium species.	Kozakai T, Nakajima A, Miyazawa K, Sasaki Y, Odamaki T, Katoh T, Fukuma T, Xiao JZ, Suzuki T, Katayama T, Sakanaka M.	iScience	10.1016/j.isci.2024.111080	2024
	Probiotic-induced changes in intestinal microbiome inhibits Toxoplasma gondii infection.	Lee HJ, Ham DW, Seo SH, Cha GH, Shin EH.	Parasites Hosts Dis	10.3347/phd.24068	2024
	Safety of Bifidobacterium breve (BBG-01) in preterm infants.	Kitajima H, Hirano S.	Pediatr Int	10.1111/ped.13123	2017
Enzymology	Photoaffinity probe-enabled discovery of sennoside A reductase in Bifidobacterium pseudocatenulatum.	Xu Y, Lv S, Li X, Zhai C, Shi Y, Li X, Feng Z, Luo G, Wang Y, Gao X.	J Pharm Anal	10.1016/j.jpha.2024.101108	2025
	The Role of Probiotics in the Treatment of Dysentery: a Randomized Double-Blind Clinical Trial.	Sharif A, Kashani HH, Nasri E, Soleimani Z, Sharif MR.	Probiotics Antimicrob Proteins	10.1007/s12602-017-9271-0	2017
	Correlation Between Lactic Acid Bacteria Beverage Intake and Stress Resilience.	Kato Y, Shimomura Y, Takada Y, Furuyashiki T.	Kobe J Med Sci		2021
Metabolism	Probiotic Bifidobacterium breve Prevents Memory Impairment Through the Reduction of Both Amyloid-beta Production and Microglia Activation in APP Knock-In Mouse.	Abdelhamid M, Zhou C, Ohno K, Kuhara T, Taslima F, Abdullah M, Jung CG, Michikawa M.	J Alzheimers Dis	10.3233/jad-215025	2022
	The role of Bifidobacterium in longevity and the future of probiotics.	Ku S, Haque MA, Jang MJ, Ahn J, Choe D, Jeon JI, Park MS.	Food Sci Biotechnol	10.1007/s10068-024-01631-y	2024
	Kestose Increases the Relative Abundance of Faecalibacterium spp. and Nominally Increases Cow Milk Tolerant Dose in Children with Cow's Milk Allergy - Preliminary Results.	Kubota S, Sugiura S, Takahashi M, Kadota Y, Takasato Y, Matsui T, Kitamura K, Tochio T, Ito K.	Pol J Microbiol	10.33073/pjm-2023-030	2023
	Liver microbial DNA signatures and extracellular vesicle epitopes as predictors of post-hepatectomy liver failure.	Cohen SJ, Meyerovich G, Ovdat E, Graubardt N, Lubezky N.	iScience	10.1016/j.isci.2025.113618	2025
	Efficacy and safety of Bacteroides fragilis BF839 for pediatric autism spectrum disorder: a randomized clinical trial.	Lin CH, Zeng T, Lu CW, Li DY, Liu YY, Li BM, Chen SQ, Deng YH.	Front Nutr	10.3389/fnut.2024.1447059	2024
	Effectiveness of Probiotics in Children With Functional Abdominal Pain Disorders and Functional Constipation: A Systematic Review.	Wegh CAM, Benninga MA, Tabbers MM.	J Clin Gastroenterol	10.1097/mcg.0000000000001054	2018
Phylogeny	Supplementation of a Basal Goat Diet With Incremental Doses of Canola Essential Oil Modulates In Vitro Rumen Fermentation and Microbial Diversity.	Idowu AP, Motsei LE, Egbu CF, Mnisi CM.	Vet Med Sci	10.1002/vms3.70283	2025
Transcriptome	Differences between live and heat-killed bifidobacteria in the regulation of immune function and the intestinal environment.	Sugahara H, Yao R, Odamaki T, Xiao JZ.	Benef Microbes	10.3920/bm2016.0158	2017
	Probiotics for the prevention of gestational diabetes mellitus: A meta-analysis of randomized controlled trials.	Li X, Zhang L, He Y, Zhang D, Zhang S.	Biomol Biomed	10.17305/bb.2024.10377	2024
	The Impact of Consuming Probiotics and Following a Vegetarian Diet on the Outcomes of Acne.	Alyoussef A.	Cureus	10.7759/cureus.51563	2024
	Study of the biosynthesis and functionality of polyphosphate in Bifidobacterium longum KABP042.	Alcantara C, Perez M, Huedo P, Altadill T, Espadaler-Mazo J, Arques JL, Zuniga M, Monedero V.	Sci Rep	10.1038/s41598-023-38082-0	2023
	Human gut-associated Bifidobacterium species salvage exogenous indole, a uremic toxin precursor, to synthesize indole-3-lactic acid via tryptophan.	Yong CC, Sakurai T, Kaneko H, Horigome A, Mitsuyama E, Nakajima A, Katoh T, Sakanaka M, Abe T, Xiao JZ, Tanaka M, Odamaki T, Katayama T.	Gut Microbes	10.1080/19490976.2024.2347728	2024
Genetics	The Probiotic Identity Card: A Novel "Probiogenomics" Approach to Investigate Probiotic Supplements.	Lugli GA, Longhi G, Alessandri G, Mancabelli L, Tarracchini C, Fontana F, Turroni F, Milani C, Di Pierro F, van Sinderen D, Ventura M.	Front Microbiol	10.3389/fmicb.2021.790881	2021
	Bacteroides salyersiae Is a Candidate Probiotic Species with Potential Anti-Colitis Properties in the Human Colon: First Evidence from an In Vivo Mouse Model.	Dai W, Lv Y, Quan M, Ma M, Shang Q, Yu G.	Nutrients	10.3390/nu16172918	2024
	Semi-rational design and modification of phosphoketolase to improve the yield of tyrosol in Saccharomyces cerevisiae.	Song N, Xia H, Xie Y, Guo S, Zhou R, Shangguan L, Zhuang K, Zhang H, An F, Zheng X, Yao L, Yang S, Chen X, Dai J.	Synth Syst Biotechnol	10.1016/j.synbio.2024.11.007	2025
	Proxi-RIMS-seq2 applied to native microbiomes uncovers hundreds of known and novel m5C methyltransferase specificities.	Yang W, Luyten Y, Reister E, Mangelson H, Sisson Z, Auch B, Liachko I, Roberts RJ, Ettwiller L.	Nucleic Acids Res	10.1093/nar/gkaf226	2025
	A multi-omics machine learning classifier for outgrowth of cow's milk allergy in children.	Hendrickx DM, Savova MV, Zhu P, An R, Boeren S, Klomp K, Mutte SK, Presto Study Team, Wopereis H, van der Molen RG, Harms AC, Belzer C.	Mol Omics	10.1039/d4mo00245h	2025
	Impact of probiotic on anxiety and depression symptoms in pregnant and lactating women and microbiota of infants: A systematic review and meta-analysis.	Halemani K, Shetty AP, Thimmappa L, Issac A, Dhiraaj S, Radha K, Mishra P, Mathias EG.	J Glob Health	10.7189/jogh.13.04038	2023
	Bifidobacterium breve and Bifidobacterium longum Attenuate Choline-Induced Plasma Trimethylamine N-Oxide Production by Modulating Gut Microbiota in Mice.	Wang Q, Guo M, Liu Y, Xu M, Shi L, Li X, Zhao J, Zhang H, Wang G, Chen W.	Nutrients	10.3390/nu14061222	2022
	Antioxidant and cytokine modulation in PCOS rats protected with probiotics, myo-inositol, and herbal extracts.	Zaki AA, Alharbi NM, Almundarij TI, Albarrak SM.	Vet Med (Praha)	10.17221/116/2024-vetmed	2025
Phylogeny	Probiotic Supplementation Improves Gut Microbiota in Chronic Metabolic and Cardio-Cerebrovascular Diseases Among Chinese Adults over 60: Study Using Cross-Sectional and Longitudinal Cohorts.	Wang X, Dong W, Liu Q, Zeng X, Liu Y, Li Z, Pan Y, Xiong Q, Lyu N, Zhu B.	Microorganisms	10.3390/microorganisms13071507	2025
	The Complex Interplay between the Gut Microbiome and Osteoarthritis: A Systematic Review on Potential Correlations and Therapeutic Approaches.	Marchese L, Contartese D, Giavaresi G, Di Sarno L, Salamanna F.	Int J Mol Sci	10.3390/ijms25010143	2023
	Carob Syrup: Prebiotic Potential of a Neglected Functional Beverage of Mediterranean Countries.	Nissen L, Addazii D, Casciano F, Danesi F, Rodriguez-Estrada MT, Mercatante D, Ben Ayache S, Lotfi A, Argiriou A, Ayfantopoulou G, Gianotti A.	Foods	10.3390/foods13244172	2024
	Probiotics to prevent necrotizing enterocolitis and reduce mortality in neonates: A meta-analysis.	Wang H, Meng X, Xing S, Guo B, Chen Y, Pan YQ.	Medicine (Baltimore)	10.1097/md.0000000000032932	2023
	Bifidobacterium animalis subsp. Lactis BL-99 Improves Maternal and Fetal Immune Responses and Pregnancy Outcomes in Pregnant Antibiotics-Treated Mice.	Faas MM, Wekema L, van Loo-Bouwman CA, Weiss GA, Hung WL, de Haan BJ, Smink AM.	Mol Nutr Food Res	10.1002/mnfr.70220	2025
Pathogenicity	A Possible Role of Akkermansia muciniphila in the Treatment of Olanzapine-Induced Weight Gain.	Bertossi F.	Cureus	10.7759/cureus.55733	2024
	The role of probiotics in the treatment of adult atopic dermatitis: a meta-analysis of randomized controlled trials.	Umborowati MA, Damayanti D, Anggraeni S, Endaryanto A, Surono IS, Effendy I, Prakoeswa CRS.	J Health Popul Nutr	10.1186/s41043-022-00318-6	2022
	Probiotics and antimicrobial protein and peptide levels in preterm infants.	Strunk T, Hibbert J, Doherty D, Granland C, Trend S, Simmer K, Burgner D, Patole S, Currie A.	Acta Paediatr	10.1111/apa.13826	2017
Pathogenicity	Comparison of novel native probiotics and paraprobiotics in modulating oxidative stress and inflammation in DSS-induced colitis: implications for enhanced therapeutic strategies in high fat diet.	Rezaie N, Aghamohammad S, Gholizadeh Khiavi EHA, Pourshafie MR, Talebi M, Rohani M.	BMC Immunol	10.1186/s12865-024-00678-0	2024
	Protective Effects of Human Milk Oligosaccharides (hMOs) on Analgesic, Nonsteroidal Anti-inflammatory Drugs (NSAIDs)-Induced Disruption of Gut Barrier Integrity in Cocultures Mimicking Neuro-Gut Epithelial Cell Crosstalk.	Chen X, Gasaly N, Walvoort MTC, de Vos P.	Mol Nutr Food Res	10.1002/mnfr.70146	2025
	The impact of antibiotics on the gut microbiota of children recovering from watery diarrhoea.	Le SH, Nguyen Ngoc Minh C, de Sessions PF, Jie S, Tran Thi Hong C, Thwaites GE, Baker S, Pham DT, Chung The H.	NPJ Antimicrob Resist	10.1038/s44259-024-00030-x	2024
	Dissolvable Probiotic-Powered Biobatteries: A Safe and Biocompatible Energy Solution for Transient Applications.	Rezaie M, Mohammadifar M, Choi S.	Small	10.1002/smll.202502633	2025
	Efficacy of an extensively hydrolyzed formula with the addition of synbiotics in infants with cow's milk protein allergy: a real-world evidence study.	Soria R, Del Compare M, Sallaberry M, Martin G, Aprigliano G, Hermida V, Carosella M, Gruenberg M, Monsell S, Micone P, Maciero E, Giglio N.	Front Allergy	10.3389/falgy.2023.1265083	2023
	Effect of combined bifidobacteria supplementation and resistance training on cognitive function, body composition and bowel habits of healthy elderly subjects.	Inoue T, Kobayashi Y, Mori N, Sakagawa M, Xiao JZ, Moritani T, Sakane N, Nagai N.	Benef Microbes	10.3920/bm2017.0193	2018
Genetics	Comparison of the composition and function of the gut microbiome in herdsmen from two pasture regions, Hongyuan and Xilingol.	Yang C, Peng C, Jin H, You L, Wang J, Xu H, Sun Z.	Food Sci Nutr	10.1002/fsn3.2290	2021
	Combining Bifidobacterium longum subsp. infantis and human milk oligosaccharides synergistically increases short chain fatty acid production ex vivo.	De Bruyn F, James K, Cottenet G, Dominick M, Katja J.	Commun Biol	10.1038/s42003-024-06628-1	2024
	Dietary, nondigestible oligosaccharides and Bifidobacterium breve M-16V suppress allergic inflammation in intestine via targeting dendritic cell maturation.	de Kivit S, Kostadinova AI, Kerperien J, Morgan ME, Muruzabal VA, Hofman GA, Knippels LMJ, Kraneveld AD, Garssen J, Willemsen LEM.	J Leukoc Biol	10.1189/jlb.3a0516-236r	2017
	Effect of Synbiotic on the Gut Microbiota of Cesarean Delivered Infants: A Randomized, Double-blind, Multicenter Study.	Chua MC, Ben-Amor K, Lay C, Neo AGE, Chiang WC, Rao R, Chew C, Chaithongwongwatthana S, Khemapech N, Knol J, Chongsrisawat V.	J Pediatr Gastroenterol Nutr	10.1097/mpg.0000000000001623	2017
	Evaluation of probiotics' efficiency on cariogenic bacteria: randomized controlled clinical study.	Sakaryali Uyar D, Uskudar Guclu A, Celik E, Memis Ozgul B, Altay Kocak A, Basustaoglu AC.	BMC Oral Health	10.1186/s12903-024-04659-y	2024
	Effect of a Short-Time Probiotic Supplementation on the Abundance of the Main Constituents of the Gut Microbiota of Term Newborns Delivered by Cesarean Section-A Randomized, Prospective, Controlled Clinical Trial.	Hurkala J, Lauterbach R, Radziszewska R, Strus M, Heczko P.	Nutrients	10.3390/nu12103128	2020
Pathogenicity	Limosilactobacillus reuteri SXDT-32-derived shikimic acid protects against colonic inflammation in piglets by inhibiting the PI3K-Akt pathway.	Chen Y, Luo C, Zhan Z, Liu S, Teng C, Mao R, Zhang S, Zhang X, Meng Q, Zhong R, Chen L, Zhang H.	J Anim Sci Biotechnol	10.1186/s40104-025-01221-w	2025
	Exploring the role of gut microbiota in Parkinson's disease: insights from fecal microbiota transplantation.	Guo M, Gao H, Wang Y, Xiang Y.	Front Neurosci	10.3389/fnins.2025.1574512	2025
	Dynamics of the Gut Microbiota and Faecal and Serum Metabolomes during Pregnancy-A Longitudinal Study.	Pan R, Guo M, Chen Y, Lin G, Tian P, Wang L, Zhao J, Chen W, Wang G.	Nutrients	10.3390/nu16040483	2024
	The dual role of gut microbiota in pancreatic cancer: new insights into onset and treatment.	Cheng H, Guo H, Wen C, Sun G, Tang F, Li Y.	Ther Adv Med Oncol	10.1177/17588359251324882	2025
	The Association of Bifidobacterium breve BR03 and B632 is Effective to Prevent Colics in Bottle-fed Infants: A Pilot, Controlled, Randomized, and Double-Blind Study.	Giglione E, Prodam F, Bellone S, Monticone S, Beux S, Marolda A, Pagani A, Di Gioia D, Del Piano M, Mogna G, Bona G.	J Clin Gastroenterol	10.1097/mcg.0000000000000693	2016
	Association of prophylactic synbiotics with reduction in diarrhea and pneumonia in mechanically ventilated critically ill patients: A propensity score analysis.	Shimizu K, Ogura H, Kabata D, Shintani A, Tasaki O, Ojima M, Ikeda M, Shimazu T.	J Infect Chemother	10.1016/j.jiac.2018.06.006	2018
Genetics	Altered microbiota, antimicrobial resistance genes, and functional enzyme profiles in the rumen of yak calves fed with milk replacer.	Zhuang Y, Guo W, Cui K, Tu Y, Diao Q, Zhang N, Bi Y, Ma T.	Microbiol Spectr	10.1128/spectrum.01314-23	2024
Metabolism	In vitro evaluation of antagonism, modulation of cytokines and extracellular matrix proteins by Bifidobacterium strains.	Silva AKS, Silva TRN, Nicoli JR, Vasquez-Pinto LMC, Martins FS.	Lett Appl Microbiol	10.1111/lam.13062	2018
	Probiotic Bacterial Application in Pediatric Critical Illness as Coadjuvants of Therapy.	Zanza C, Romenskaya T, Longhitano Y, Piccolella F, Racca F, Tassi MF, Rubulotta F, Abenavoli L, Shiffer D, Franceschi F, Migneco A, Saviano A, Piccioni A, Ojetti V.	Medicina (Kaunas)	10.3390/medicina57080781	2021
	Gut Bacteria in Alcohol-Associated Liver Disease.	Yang Y, Schnabl B.	Clin Liver Dis	10.1016/j.cld.2024.06.008	2024
	Synbiotic Supplementation Improves Obesity Index and Metabolic Biomarkers in Thai Obese Adults: A Randomized Clinical Trial.	Chaiyasut C, Sivamaruthi BS, Kesika P, Khongtan S, Khampithum N, Thangaleela S, Peerajan S, Bumrungpert A, Chaiyasut K, Sirilun S, Sittiprapaporn P.	Foods	10.3390/foods10071580	2021
	Heterologous expression of a novel linoleic acid isomerase BBI, and effect of fusion tags on its performance.	Mei Y, Li X, Yang B, Zhao J, Zhang H, Chen H, Chen W.	Curr Res Food Sci	10.1016/j.crfs.2022.07.013	2022
	The beneficial effect of probiotics in the prevention of irinotecan-induced diarrhea in colorectal cancer patients with colostomy: a pooled analysis of two probiotic trials (Probio-SK-003 and Probio-SK-005) led by Slovak Cooperative Oncology Group.	Mego M, Kasperova B, Chovanec J, Danis R, Reckova M, Bystricky B, Konkolovsky P, Jurisova S, Porsok S, Vaclav V, Wagnerova M, Stresko M, Brezinova B, Sutekova D, Ciernikova S, Svetlovska D, Drgona L.	Front Oncol	10.3389/fonc.2024.1438657	2024
	The Value of Microbes in Cancer Neoantigen Immunotherapy.	Tian J, Ma J.	Pharmaceutics	10.3390/pharmaceutics15082138	2023
	Unveiling the inhibition mechanism of Clostridioides difficile by Bifidobacterium longum via multiomics approach.	Jo SH, Jeon HJ, Song WS, Lee JS, Kwon JE, Park JH, Kim YR, Kim MG, Baek JH, Kwon SY, Kim JS, Yang YH, Kim YG.	Front Microbiol	10.3389/fmicb.2023.1293149	2023
	Compositional Changes in the Gut Microbiota of Responders and Non-responders to Probiotic Treatment Among Patients With Diarrhea-predominant Irritable Bowel Syndrome: A Post Hoc Analysis of a Randomized Clinical Trial.	Shin SY, Park S, Moon JM, Kim K, Kim JW, Chun J, Lee TH, Choi CH, Microbiome Research Group of the Korean Society for Neurogastroenterology and Motility.	J Neurogastroenterol Motil	10.5056/jnm21202	2022
	Dynamic Associations of Milk Components With the Infant Gut Microbiome and Fecal Metabolites in a Mother-Infant Model by Microbiome, NMR Metabolomic, and Time-Series Clustering Analyses.	Komatsu Y, Kumakura D, Seto N, Izumi H, Takeda Y, Ohnishi Y, Nakaoka S, Aizawa T.	Front Nutr	10.3389/fnut.2021.813690	2021
	Influence and Selection of Probiotics on Depressive Disorders in Occupational Health: Scoping Review.	Pico-Monllor JA, Sala-Segura E, Tobares RA, Moreno-Ochando A, Hernandez-Teruel A, Navarro-Lopez V.	Nutrients	10.3390/nu15163551	2023
Metabolism	The potential synergistic behaviour of inter- and intra-genus probiotic combinations in the pattern and rate of short chain fatty acids formation during fibre fermentation.	Fernando WMADB, Flint SH, Ranaweera KKDS, Bamunuarachchi A, Johnson SK, Brennan CS.	Int J Food Sci Nutr	10.1080/09637486.2017.1340932	2018
	Bifidobacterium with the role of 5-hydroxytryptophan synthesis regulation alleviates the symptom of depression and related microbiota dysbiosis.	Tian P, Wang G, Zhao J, Zhang H, Chen W.	J Nutr Biochem	10.1016/j.jnutbio.2019.01.007	2019
	Synbiotic Supplementation May Relieve Anterior Uveitis, an Ocular Manifestation in Behcet's Syndrome.	Askari G, Moravejolahkami AR.	Am J Case Rep	10.12659/ajcr.912023	2019
	Gut microbiota: A new window for the prevention and treatment of neuropsychiatric disease	Tang Y, Zhang Y, Chen C, Cao Y, Wang Q, Tang C.	J Cent Nerv Syst Dis		2025
	Probiotics and refractory chronic spontaneous urticaria.	Nettis E, Di Leo E, Pastore A, Distaso M, Zaza I, Vacca M, Macchia L, Vacca A.	Eur Ann Allergy Clin Immunol		2016
	Evaluation of Potential Probiotics Isolated from Human Milk and Colostrum.	Damaceno QS, Souza JP, Nicoli JR, Paula RL, Assis GB, Figueiredo HC, Azevedo V, Martins FS.	Probiotics Antimicrob Proteins	10.1007/s12602-017-9270-1	2017
Pathogenicity	The Effect of Probiotics on the Management of Pain and Inflammation in Osteoarthritis: A Systematic Review and Meta-Analysis of Clinical Studies.	Moyseos M, Michael J, Ferreira N, Sophocleous A.	Nutrients	10.3390/nu16142243	2024
	The Gut-Ex-Vivo System (GEVS) Is a Dynamic and Versatile Tool for the Study of DNBS-Induced IBD in BALB/C and C57BL/6 Mice, Highlighting the Protective Role of Probiotics.	Monzani R, Gagliardi M, Clemente N, Saverio V, Panczyszyn E, Santoro C, Yissachar N, Visciglia A, Pane M, Amoruso A, Corazzari M.	Biology (Basel)	10.3390/biology11111574	2022
	The Impact of Cesarean Section Delivery on Intestinal Microbiota: Mechanisms, Consequences, and Perspectives-A Systematic Review.	Inchingolo F, Inchingolo AD, Palumbo I, Trilli I, Guglielmo M, Mancini A, Palermo A, Inchingolo AM, Dipalma G.	Int J Mol Sci	10.3390/ijms25021055	2024
	Evaluation of Microbiome Alterations Following Consumption of BIOHM, a Novel Probiotic.	Ghannoum MA, McCormick TS, Retuerto M, Bebek G, Cousineau S, Hartman L, Barth C, Schrom K.	Curr Issues Mol Biol	10.3390/cimb43030148	2021
	Synergistic Synbiotic-Containing Lactiplantibacillus plantarum and Fructo-Oligosaccharide Alleviate the Allergenicity of Mice Induced by Soy Protein.	Bai J, Zeng Q, Den W, Huang L, Wu Z, Li X, Tong P, Chen H, Yang A.	Foods	10.3390/foods14010109	2025
Metabolism	Probiotic pasta consumption improves lipid metabolism and reduces gut permeability in overweight and obese adults: a randomized controlled trial.	Tagliamonte S, Barone Lumaga R, De Filippis F, Valentino V, Aponte M, Romano R, Vitaglione P.	Curr Res Food Sci	10.1016/j.crfs.2025.101215	2025
Metabolism	Deciphering the influence of paraimmunobiotic bifidobacteria on the innate antiviral immune response of bovine intestinal epitheliocytes by transcriptomic analysis.	Albarracin L, Komatsu R, Garcia-Castillo V, Aso H, Iwabuchi N, Xiao JZ, Abe F, Takahashi H, Villena J, Kitazawa H.	Benef Microbes	10.3920/bm2018.0024	2019
	The relationship between prebiotic intake and allergic rhinitis.	Chang C, Wang Q, Wang Q, Li X, Tan H, Huang G.	Laryngoscope Investig Otolaryngol	10.1002/lio2.1158	2023
	A combination of scGOS/lcFOS with Bifidobacterium breve M-16V protects suckling rats from rotavirus gastroenteritis.	Rigo-Adrover M, Saldana-Ruiz S, van Limpt K, Knipping K, Garssen J, Knol J, Franch A, Castell M, Perez-Cano FJ.	Eur J Nutr	10.1007/s00394-016-1213-1	2017
	Oral Administration of Probiotic Bifidobacterium breve Improves Facilitation of Hippocampal Memory Extinction via Restoration of Aberrant Higher Induction of Neuropsin in an MPTP-Induced Mouse Model of Parkinson's Disease.	Ishii T, Furuoka H, Kaya M, Kuhara T.	Biomedicines	10.3390/biomedicines9020167	2021
Metabolism	Bifidobacteria-derived lipoproteins inhibit infection with coxsackievirus B4 in vitro.	El Kfoury KA, Romond MB, Scuotto A, Alidjinou EK, Dabboussi F, Hamze M, Engelmann I, Sane F, Hober D.	Int J Antimicrob Agents	10.1016/j.ijantimicag.2017.03.010	2017
	Microbiota-based interventions for autism spectrum disorder: a systematic review of efficacy and clinical potential.	Taha H, Issa A, Muhanna Z, Al-Shehab M, Wadi T, Awamleh S, Ateiwi YA, Abusido M, Berggren V.	Front Microbiol	10.3389/fmicb.2025.1648118	2025
Pathogenicity	Modulatory effect of three probiotic strains on infants' gut microbial composition and immunological parameters on a placebo-controlled, double-blind, randomised study.	De Andres J, Manzano S, Garcia C, Rodriguez JM, Espinosa-Martos I, Jimenez E.	Benef Microbes	10.3920/bm2017.0132	2018
	Antimicrobial Activity of Chitosan Scaffold Loaded with Soluble Factors of Different Probiotic Strains Against Multidrug Resistant Pseudomonas aeruginosa.	Soleymani F, Rahimi HR, Farsiani H, Jalili A.	Iran J Biotechnol	10.30498/ijb.2024.381455.3612	2024
	Therapeutic Potential of Microbiota Modulation in Alzheimer's Disease: A Review of Preclinical Studies.	Benichou Haziot C, Birak KS.	J Alzheimers Dis Rep	10.3233/adr-220097	2023
	Colonization of Supplemented Bifidobacterium breve M-16V in Low Birth Weight Infants and Its Effects on Their Gut Microbiota Weeks Post-administration.	Horigome A, Hisata K, Odamaki T, Iwabuchi N, Xiao JZ, Shimizu T.	Front Microbiol	10.3389/fmicb.2021.610080	2021
	Research Advances in the Treatment of Allergic Rhinitis by Probiotics.	Liu P, Hu T, Kang C, Liu J, Zhang J, Ran H, Zeng X, Qiu S.	J Asthma Allergy	10.2147/jaa.s382978	2022
	The role of probiotics in the non-surgical management of peri-implantitis: a systematic review.	Al-Zawawi AS.	Saudi Dent J	10.1007/s44445-025-00032-z	2025
	Link between gut microbiota dysbiosis and childhood asthma: Insights from a systematic review.	Aslam R, Herrles L, Aoun R, Pioskowik A, Pietrzyk A.	J Allergy Clin Immunol Glob	10.1016/j.jacig.2024.100289	2024
	Fructooligosaccharides benefits on glucose homeostasis upon high-fat diet feeding require type 2 conventional dendritic cells.	Gelineau A, Marcelin G, Ouhachi M, Dussaud S, Voland L, Manuel R, Baba I, Rouault C, Yvan-Charvet L, Clement K, Tussiwand R, Huby T, Gautier EL.	Nat Commun	10.1038/s41467-024-49820-x	2024
	MAMI: a comprehensive database of mother-infant microbiome and probiotic resources.	Zhou T, Xiao L, Zuo Z, Zhao F.	Nucleic Acids Res	10.1093/nar/gkad813	2024
	Synbiotic (FamiLact) administration in idiopathic male infertility enhances sperm quality, DNA integrity, and chromatin status: A triple-blinded randomized clinical trial.	Abbasi B, Abbasi H, Niroumand H.	Int J Reprod Biomed	10.18502/ijrm.v19i3.8571	2021
	Early gut colonization by Bifidobacterium breve and B. catenulatum differentially modulates eczema risk in children at high risk of developing allergic disease.	Ismail IH, Boyle RJ, Licciardi PV, Oppedisano F, Lahtinen S, Robins-Browne RM, Tang ML.	Pediatr Allergy Immunol	10.1111/pai.12646	2016
	The Small Intestinal Microbiota and the Gut-Brain Axis in Parkinson's Disease: A Narrative Review.	Carrossa G, Misenti V, Faggin S, Giron MC, Antonini A.	Biomedicines	10.3390/biomedicines13071769	2025
	Bee pollen in zebrafish diet affects intestinal microbiota composition and skin cutaneous melanoma development.	Di Chiacchio IM, Gomez-Abenza E, Paiva IM, de Abreu DJM, Rodriguez-Vidal JF, Carvalho EEN, Carvalho SM, Solis-Murgas LD, Mulero V.	Sci Rep	10.1038/s41598-022-14245-3	2022
	Wide identification of chemical constituents in fermented licorice and explore its efficacy of anti-neurodegeneration by combining quasi-targeted metabolomics and in-depth bioinformatics.	Wang X, Liu Y, Kang N, Xu G.	Front Neurosci	10.3389/fnins.2023.1156037	2023
	Resequencing the Genome of Bifidobacterium breve Strain CECT7263.	Martinez N, Luque R, Olivares MM, Margolles A, Banuelos O.	Genome Announc	10.1128/genomea.00299-17	2017
Genetics	Genome-scale metabolic modelling of human gut microbes to inform rational community design.	Molina Ortiz JP, McClure DD, Holmes A, Rice SA, Read MN, Shanahan ER.	Gut Microbes	10.1080/19490976.2025.2534673	2025
	Human milk oligosaccharide-sharing by a consortium of infant derived Bifidobacterium species.	Walsh C, Lane JA, van Sinderen D, Hickey RM.	Sci Rep	10.1038/s41598-022-07904-y	2022
	A novel mannan-specific chimeric antigen receptor M-CAR redirects T cells to interact with Candida spp. hyphae and Rhizopus oryzae spores.	Guimaraes JG, de Campos GY, Machado MP, Oliveira Brito PKM, Dos Reis TF, Goldman GH, Bonini Palma PV, de Campos Fraga-Silva TF, Cavallin DCU, Venturini J, da Silva TA.	Bioengineered	10.1080/21655979.2025.2458786	2025
	Research trends and hotspots of osteoporosis and intestinal microbiota: A bibliometric analysis.	Zhang H, Dong Z, Su J, Zhou Z, Li W, Yuan X, Chen L, He W.	Medicine (Baltimore)	10.1097/md.0000000000041939	2025
	Methicillin-resistant Staphylococcus aureus enterocolitis in a 16-month-old boy: a case report.	Loerke C, Liebe H, Hunter CJ.	J Med Case Rep	10.1186/s13256-022-03381-z	2022
	Bifidobacterium mechanisms of immune modulation and tolerance.	Gavzy SJ, Kensiski A, Lee ZL, Mongodin EF, Ma B, Bromberg JS.	Gut Microbes	10.1080/19490976.2023.2291164	2023
	Bifidobacterial biofilm formation is a multifactorial adaptive phenomenon in response to bile exposure.	Kelly SM, Lanigan N, O'Neill IJ, Bottacini F, Lugli GA, Viappiani A, Turroni F, Ventura M, van Sinderen D.	Sci Rep	10.1038/s41598-020-68179-9	2020
Pathogenicity	Prebiotic effects of bovine lactoferrin on specific probiotic bacteria.	Chen PW, Liu ZS, Kuo TC, Hsieh MC, Li ZW.	Biometals	10.1007/s10534-017-9999-8	2017
	Gut microbial bile and amino acid metabolism associate with peanut oral immunotherapy failure.	Ozcam M, Lin DL, Gupta CL, Li A, Gomez JC, Wheatley LM, Baloh CH, Sanda S, Jones SM, Lynch SV.	Nat Commun	10.1038/s41467-025-61161-x	2025
	Effects of Taro (Colocasia esculenta) Water-Soluble Non-Starch Polysaccharide, Lactobacillus acidophilus, Bifidobacterium breve, Bifidobacterium infantis, and Their Synbiotic Mixtures on Pro-Inflammatory Cytokine Interleukin-8 Production	Anwar M, Mros S, McConnell M, Bekhit AEA.	Nutrients	10.3390/nu14102128	2022
Genetics	Nisin-like biosynthetic gene clusters are widely distributed across microbiomes.	Hourigan D, Field D, Murray E, Sugrue I, O'Connor PM, Hill C, Ross RP.	mBio	10.1128/mbio.01545-25	2025
	Effect of Bifidobacterium breve M-16V supplementation on faecal bifidobacteria in growth restricted very preterm infants - analysis from a randomised trial.	Patole SK, Keil AD, Nathan E, Doherty D, Esvaran M, Simmer KN, Conway P.	J Matern Fetal Neonatal Med	10.3109/14767058.2016.1147554	2016
	Infant gut microbiota and environment associate with juvenile idiopathic arthritis many years prior to disease onset, especially in genetically vulnerable children.	Kindgren E, Ahrens AP, Triplett EW, Ludvigsson J.	EBioMedicine	10.1016/j.ebiom.2023.104654	2023
Pathogenicity	Effect of Probiotic Supplementation on Intestinal Permeability in Overweight and Obesity: A Systematic Review of Randomized Controlled Trials and Animal Studies.	DiMattia Z, Damani JJ, Van Syoc E, Rogers CJ.	Adv Nutr	10.1016/j.advnut.2023.100162	2024
	A Convolutional Neural Network Deep Learning Model Trained on CD Ulcers Images Accurately Identifies NSAID Ulcers.	Klang E, Kopylov U, Mortensen B, Damholt A, Soffer S, Barash Y, Konen E, Grinman A, Yehuda RM, Buckley M, Shanahan F, Eliakim R, Ben-Horin S.	Front Med (Lausanne)	10.3389/fmed.2021.656493	2021
	Middle East consensus recommendations on the use of young child formula (YCF) in toddlers.	Al-Biltagi M, Faysal W, Alabdulrazzaq F, Alsabea H, Bassil Z, Chamseddine F, Chokr I, El-Beleidy A, Ezzat M, Farrah A, Mizyed M, Sayed AOS, Talib HA, Wali Y.	J Nutr Sci	10.1017/jns.2022.54	2022
	Novel Lactobacillaceae strains and consortia to produce propionate-containing fermentates as biopreservatives.	Buljubasic E, Bambace MF, Christensen MHL, Ng KS, Huertas-Diaz L, Sundekilde U, Marietou A, Schwab C.	Microb Biotechnol	10.1111/1751-7915.14392	2024
	Fecal Microbiome and Food Allergy in Pediatric Atopic Dermatitis: A Cross-Sectional Pilot Study.	Fieten KB, Totte JEE, Levin E, Reyman M, Meijer Y, Knulst A, Schuren F, Pasmans SGMA.	Int Arch Allergy Immunol	10.1159/000484897	2018
	Can Probiotics Reduce Diarrhea and Infant Mortality in Africa?: The Project of a Pilot Study.	Del Piano M, Coggiola F, Pane M, Amoruso A, Nicola S, Mogna L.	J Clin Gastroenterol	10.1097/mcg.0000000000000677	2016
	Bifidobacterium longum and Chlorella sorokiniana Combination Modulates IFN-gamma, IL-10, and SOCS3 in Rotavirus-Infected Cells.	Velderrain-Armenta F, Gonzalez-Ochoa G, Tamez-Guerra P, Romero-Arguelles R, Romo-Saenz CI, Gomez-Flores R, Flores-Mendoza L, Icedo-Garcia R, Sonanez-Organis JG.	Int J Mol Sci	10.3390/ijms25105514	2024
	Capacity of a Microbial Synbiotic To Rescue the In Vitro Metabolic Activity of the Gut Microbiome following Perturbation with Alcohol or Antibiotics.	Tierney BT, Van den Abbeele P, Al-Ghalith GA, Verstrepen L, Ghyselinck J, Calatayud M, Marzorati M, Gadir AA, Daisley B, Reid G, Bron PA, Gevers D, Dhir R, Simmons SL.	Appl Environ Microbiol	10.1128/aem.01880-22	2023
Genetics	Inactivation of Cronobacter sakazakii in powdered infant formula with probiotics and metagenomic analysis.	Lee JY, Kwon EA, Kim SS.	Food Sci Biotechnol	10.1007/s10068-023-01503-x	2024
	Role of Human Microbiome in Development and Management of Head and Neck Squamous Cell Carcinoma.	Palkovsky M, Modrackova N, Neuzil-Bunesova V, Liberko M, Hlodakova A, Soumarova R.	Cancers (Basel)	10.3390/cancers17132238	2025
	Impact of a Probiotic-Fiber Blend on Body Weight, Metabolic Regulation, and Digestive Function in Obese Adults: A Randomized, Placebo-Controlled, Multicentric Trial.	Kn M, Agarwal R, Patange A, Rao P, Ganu G, Khan K, Sawant S.	Cureus	10.7759/cureus.82613	2025
	The impact of iron supplementation on the preterm neonatal gut microbiome: A pilot study.	VanOrmer M, Thompson M, Thoene M, Riethoven JJ, Natarajan SK, Hanson C, Anderson-Berry A.	PLoS One	10.1371/journal.pone.0297558	2024
	Dietary live microorganisms and depression-driven mortality in hypertensive patients: NHANES 2005-2018.	Huang X, Hu L, Li J, Xie X, Meng C, Liu Y, Wei X.	J Health Popul Nutr	10.1186/s41043-025-00861-y	2025
	Respiratory diseases and the gut microbiota: an updated review.	Yu X, Yu X, Wang Y, Guo X, Wang C, Wang F.	Front Cell Infect Microbiol	10.3389/fcimb.2025.1629005	2025
	Inflammatory Manifestations Associated With Gut Dysbiosis in Alzheimer's Disease.	Kozhakhmetov S, Kaiyrlykyzy A, Jarmukhanov Z, Vinogradova E, Zholdasbekova G, Alzhanova D, Kunz J, Kushugulova A, Askarova S.	Int J Alzheimers Dis	10.1155/2024/9741811	2024
	Dietary Sugar and Saturated Fat Consumption Associated with the Gastrointestinal Microbiome during Pregnancy.	Dreisbach C, Nansel T, Peddada S, Nicholson W, Siega-Riz AM.	J Nutr	10.1016/j.tjnut.2024.09.016	2024
	Enhancement of ginsenoside Rg1 in Panax ginseng hairy root by overexpressing the alpha-L-rhamnosidase gene from Bifidobacterium breve	Zhang R, Zhang BL, Li GC, Xie T, Hu T, Luo ZY.	Biotechnol Lett		2015
	Clinical study on sequential treatment of severe diarrhea irritable bowel syndrome with precision probiotic strains transplantation capsules, fecal microbiota transplantation capsules and live combined bacillus subtilis and enterococcus faecium capsules.	Lv L, Ruan G, Ping Y, Cheng Y, Tian Y, Xiao Z, Zhao X, Chen D, Wei Y.	Front Cell Infect Microbiol	10.3389/fcimb.2022.1025889	2022
	Investigating the antidepressant effect of Ziyan green tea on chronic unpredictable mild stress mice through fecal metabolomics.	Jia W, Tang Q, Zou Y, Yang Y, Wu W, Xu W.	Front Microbiol	10.3389/fmicb.2023.1256142	2023
Enzymology	Human milk oligosaccharide categories define the microbiota composition in human colostrum.	Aakko J, Kumar H, Rautava S, Wise A, Autran C, Bode L, Isolauri E, Salminen S.	Benef Microbes	10.3920/bm2016.0185	2017
Pathogenicity	Bifidobacterium breve prevents necrotising enterocolitis by suppressing inflammatory responses in a preterm rat model.	Satoh T, Izumi H, Iwabuchi N, Odamaki T, Namba K, Abe F, Xiao JZ.	Benef Microbes	10.3920/bm2015.0035	2016
	Efficacy and safety of human gut-derived multi-strain probiotics in patients with irritable bowel syndrome: A prospective open-label observation study.	Oh CK, Park JK, Kim YJ, Kim JB.	Medicine (Baltimore)	10.1097/md.0000000000034899	2023
	Causal Analysis Between Gut Microbes, Aging Indicator, and Age-Related Disease, Involving the Discovery and Validation of Biomarkers.	Lu C, Wang X, Chen X, Qin T, Ye P, Liu J, Wang S, Luo W.	Aging Cell	10.1111/acel.70057	2025
Genetics	Assessing Gut Microbiota in an Infant with Congenital Propionic Acidemia before and after Probiotic Supplementation.	Bordugo A, Salvetti E, Rodella G, Piazza M, Dianin A, Amoruso A, Piacentini G, Pane M, Torriani S, Vitulo N, Felis GE.	Microorganisms	10.3390/microorganisms9122599	2021
	Influence of Diet on Bowel Function and Abdominal Symptoms in Children and Adolescents with Hirschsprung Disease-A Multinational Patient-Reported Outcome Survey.	Lindert J, Day H, de Andres Crespo M, Amerstorfer E, Alexander S, Backes M, de Filippo C, Golebiewski A, Midrio P, Mohideen M, Modrzyk A, Lemli A, Rassouli-Kirchmeier R, Pfaff-Jongman M, Staszkiewicz K, Telborn L, Stenstrom P, Holstrom K, Kohl M, Curry J, Loukogeorgakis S, Davidson JR.	Children (Basel)	10.3390/children11091118	2024
Pathogenicity	Gut Microbiota and Critically Ill Patients: Immunity and Its Modulation via Probiotics and Immunonutrition.	Abenavoli L, Scarpellini E, Paravati MR, Scarlata GGM, Boccuto L, Tilocca B, Roncada P, Luzza F.	Nutrients	10.3390/nu15163569	2023
	Potential mechanism of probiotic fermentation of Auricularia cornea var. Li./blueberry to reduce obesity induced by a high-fat diet.	Jiang X, Li X, Li S, Wang M, Zhao Y, He S, Liu J, Fan W.	Food Chem X	10.1016/j.fochx.2024.101160	2024
	Probiotics and Functional Gastrointestinal Disorders in Pediatric Age: A Narrative Review.	Capozza M, Laforgia N, Rizzo V, Salvatore S, Guandalini S, Baldassarre M.	Front Pediatr	10.3389/fped.2022.805466	2022
	Postbiotics: an insightful review of the latest category in functional biotics.	Amobonye A, Pillay B, Hlope F, Asong ST, Pillai S.	World J Microbiol Biotechnol	10.1007/s11274-025-04483-8	2025
	What Is the Role of the Gut Microbiota in Anastomotic Leakage After Colorectal Resection? A Scoping Review of Clinical and Experimental Studies.	Lianos GD, Frountzas M, Kyrochristou ID, Sakarellos P, Tatsis V, Kyrochristou GD, Bali CD, Gazouli M, Mitsis M, Schizas D.	J Clin Med	10.3390/jcm13226634	2024
Phylogeny	Glycoside hydrolase family 13 alpha-glucosidases encoded by Bifidobacterium breve UCC2003; A comparative analysis of function, structure and phylogeny.	Kelly ED, Bottacini F, O'Callaghan J, Motherway MO, O'Connell KJ, Stanton C, van Sinderen D.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2016.02.014	2016
	Impact of probiotics on muscle mass, muscle strength and lean mass: a systematic review and meta-analysis of randomized controlled trials.	Prokopidis K, Giannos P, Kirwan R, Ispoglou T, Galli F, Witard OC, Triantafyllidis KK, Kechagias KS, Morwani-Mangnani J, Ticinesi A, Isanejad M.	J Cachexia Sarcopenia Muscle	10.1002/jcsm.13132	2023
Genetics	A simple method that enhances minority species detection in the microbiota: 16S metagenome-DRIP (Deeper Resolution using an Inhibitory Primer).	Nakajima A, Yoshida K, Gotoh A, Katoh T, Ojima MN, Sakanaka M, Xiao JZ, Odamaki T, Katayama T.	Microbiome Res Rep	10.20517/mrr.2022.08	2022
	Complete genome sequence of the probiotic bacterium Bifidobacterium breve KCTC 12201BP isolated from a healthy infant.	Kwak MJ, Yoon JK, Kwon SK, Chung MJ, Seo JG, Kim JF.	J Biotechnol	10.1016/j.jbiotec.2015.09.035	2015
	Role of microbes in colorectal cancer therapy: Cross-talk between the microbiome and tumor microenvironment.	Xia C, Cai Y, Ren S, Xia C.	Front Pharmacol	10.3389/fphar.2022.1051330	2022
	Microbial production and functional assessment of gamma-polyglutamic acid isolated from Bacillus sp. M-E6.	Manika V, Devi PB, Majaw J, Rani PU, Reddy GB, Kavitake D, Shetty PH.	Front Microbiol	10.3389/fmicb.2025.1647287	2025
	Clinical outcomes and associated bacterial and fungal microbiota changes after high dose probiotic therapy for severe alcohol-associated hepatitis: An observational study.	Philips CA, Philips CA, Ahamed R, Oommen TT, Nahaz N, Tharakan A, Rajesh S, Augustine P.	Medicine (Baltimore)	10.1097/md.0000000000040429	2024
	The efficacy and safety of probiotics in the adjuvant treatment of psoriasis: a systematic review and meta-analysis of randomized controlled trials.	Zhu Y, Xu F, Chen H, Zheng Q.	Front Med (Lausanne)	10.3389/fmed.2024.1448626	2024
Pathogenicity	Research Note: Probiotic, Bacillus subtilis, alleviates neuroinflammation in the hippocampus via the gut microbiota-brain axis in heat-stressed chickens.	Fu Y, Hu J, Cheng HW.	Poult Sci	10.1016/j.psj.2023.102635	2023
	Difference in the Intestinal Microbiota between Breastfeed Infants and Infants Fed with Artificial Milk: A Systematic Review.	Inchingolo F, Inchingolo AM, Latini G, Ferrante L, de Ruvo E, Campanelli M, Longo M, Palermo A, Inchingolo AD, Dipalma G.	Pathogens	10.3390/pathogens13070533	2024
	Cohabiting with ulcerative colitis patients decreases differences of gut microbiome between healthy individuals and the patients.	Li C, Guo X, He Y, Wang J, Hao J, Liu X.	Ann Med	10.1080/07853890.2024.2337712	2024
Genetics	The Genomic Characteristics of Potential Probiotics: Two Streptococcus salivarius Isolates from a Healthy Individual in China.	Sun M, Li Q, Zhang F, Yao D, Huang W, Lv Q, Jiang H, Kong D, Ren Y, Chen S, Jiang Y, Liu P.	Microorganisms	10.3390/microorganisms13030694	2025
Enzymology	Contributions to human breast milk microbiome and enteromammary transfer of Bifidobacterium breve.	Kordy K, Gaufin T, Mwangi M, Li F, Cerini C, Lee DJ, Adisetiyo H, Woodward C, Pannaraj PS, Tobin NH, Aldrovandi GM.	PLoS One	10.1371/journal.pone.0219633	2020
	Bacteria-Mediated Hypoxia-Specific Delivery of Nanoparticles for Tumors Imaging and Therapy.	Luo CH, Huang CT, Su CH, Yeh CS.	Nano Lett	10.1021/acs.nanolett.6b00262	2016
	Clostridium butyricum ameliorates indomethacin-induced enteropathy by promoting MUC2 secretion via suppressing the Notch pathway.	Zhu L, Luo Y, Liu Y, Sun S, Yuan J, Zhang L, Zhong W, Ma S, Yu Z, Zhou J, Chen X, Zhao J.	Front Microbiol	10.3389/fmicb.2025.1509876	2025
	Offspring's exposome: a narrative review on the influence of early-life factors on childhood obesity risk.	Maccarini B, Loperfido F, Bianco I, Sottotetti F, El Masri D, Ferrara C, Verme F, Cangelosi E, Meriggi N, De Filippo C, Cena H, De Giuseppe R.	Front Nutr	10.3389/fnut.2025.1597746	2025
	Isomaltooligosaccharides utilization and genomic characterization of human infant anti-inflammatory Bifidobacterium longum and Bifidobacterium breve strains.	Sharma S, Singh S, Chaudhary V, Mantri S, Chander A, Maurya R, Rajarammohan S, Singh RP, Rishi P, Bishnoi M, Bhadada SK, Kondepudi KK.	3 Biotech	10.1007/s13205-022-03141-2	2022
Metabolism	Dietary intake of bioactive ingredients impacts liver and adipose tissue transcriptomes in a porcine model of prepubertal early obesity.	Ballester M, Quintanilla R, Ortega FJ, Serrano JCE, Cassanye A, Rodriguez-Palmero M, Moreno-Munoz JA, Portero-Otin M, Tibau J.	Sci Rep	10.1038/s41598-020-62320-4	2020
	An Unconventional Oral Candidiasis in an Immunocompetent Patient.	Fusco A, Contaldo M, Savio V, Baroni A, Ferraro GA, Di Stasio D, Lucchese A, Chiaromonte A, Donnarumma G, Serpico R.	J Fungi (Basel)	10.3390/jof9030295	2023
	A randomised controlled trial of the probiotic Bifidobacterium breve BBG-001 in preterm babies to prevent sepsis, necrotising enterocolitis and death: the Probiotics in Preterm infantS (PiPS) trial.	Costeloe K, Bowler U, Brocklehurst P, Hardy P, Heal P, Juszczak E, King A, Panton N, Stacey F, Whiley A, Wilks M, Millar MR.	Health Technol Assess	10.3310/hta20660	2016
Metabolism	Enhancement of ginsenoside Rg(1) in Panax ginseng hairy root by overexpressing the alpha-L-rhamnosidase gene from Bifidobacterium breve.	Zhang R, Zhang BL, Li GC, Xie T, Hu T, Luo ZY.	Biotechnol Lett	10.1007/s10529-015-1889-y	2015
	Effects of a multispecies synbiotic on intestinal mucosa immune responses.	Athiyyah AF, Widjaja NA, Fitri P, Setiowati A, Darma A, Ranuh R, Sudarmo SM.	Iran J Microbiol	10.18502/ijm.v11i4.1467	2019
Phylogeny	Case report: Aberrant fecal microbiota composition of an infant diagnosed with prolonged intestinal botulism.	Douillard FP, Derman Y, Jian C, Korpela K, Saxen H, Salonen A, de Vos WM, Korkeala H, Lindstrom M.	Gut Pathog	10.1186/s13099-024-00614-y	2024
	Oral administration of Bifidobacterium breve promotes antitumor efficacy via dendritic cells-derived interleukin 12.	Li Q, Li Y, Wang Y, Xu L, Guo Y, Wang Y, Wang L, Guo C.	Oncoimmunology	10.1080/2162402x.2020.1868122	2021
	Unraveling the relative abundance of psychobiotic bacteria in children with Autism Spectrum Disorder.	Darwesh MK, Bakr W, Omar TEI, El-Kholy MA, Azzam NF.	Sci Rep	10.1038/s41598-024-72962-3	2024
	Fixing Functional GI Disorders Using Microbes: Easier Said Than Done.	Reid G, Dhir R, Bron PA.	Front Endocrinol (Lausanne)	10.3389/fendo.2022.804179	2022
	Bifidobacterium inhibits the progression of colorectal tumorigenesis in mice through fatty acid isomerization and gut microbiota modulation.	Chen Y, Fang H, Chen H, Liu X, Zhao J, Stanton C, Ross RP, Chen W, Yang B.	Gut Microbes	10.1080/19490976.2025.2464945	2025
Metabolism	Genotyping and plant-derived glycan utilization analysis of Bifidobacterium strains from mother-infant pairs.	Kan Z, Luo B, Cai J, Zhang Y, Tian F, Ni Y.	BMC Microbiol	10.1186/s12866-020-01962-w	2020
	Towards a psychobiotic therapy for depression: Bifidobacterium breve CCFM1025 reverses chronic stress-induced depressive symptoms and gut microbial abnormalities in mice.	Tian P, O'Riordan KJ, Lee YK, Wang G, Zhao J, Zhang H, Cryan JF, Chen W.	Neurobiol Stress	10.1016/j.ynstr.2020.100216	2020
	Association of dietary intake of live microbes with bowel health and depression in US adults: a cross-sectional study of NHANES 2005-2010.	Shi J, Zhao Q, Liang Z, Cui H, Liu Y, Cheng Y, Zhang M.	Environ Health Prev Med	10.1265/ehpm.24-00202	2024
	The impact of synbiotic on serum sCD163/sTWEAK, paraoxonase 1, and lipoproteins in patients with chronic heart failure: a randomized, triple-blind, controlled trial.	Matin SS, Shidfar F, Naderi N, Amin A, Hosseini-Baharanchi FS, Dehnad A.	Sci Rep	10.1038/s41598-024-69560-8	2024
Genetics	Broad Purpose Vector for Site-Directed Insertional Mutagenesis in Bifidobacterium breve.	Hoedt EC, Bottacini F, Cash N, Bongers RS, van Limpt K, Ben Amor K, Knol J, MacSharry J, van Sinderen D.	Front Microbiol	10.3389/fmicb.2021.636822	2021
Pathogenicity	Fermented Soymilk with Probiotic Lactobacilli and Bifidobacterium Strains Ameliorates Dextran-Sulfate-Sodium-Induced Colitis in Rats.	Al Zahrani AJ, Shori AB, Al-Judaibi E.	Nutrients	10.3390/nu16203478	2024
	Biotransformation of rutin to isoquercitrin using recombinant alpha-L-rhamnosidase from Bifidobacterium breve	Zhang R, Zhang BL, Xie T, Li GC, Tuo Y, Xiang YT.	Biotechnol Lett		2015
	Term Infant Formulas Influencing Gut Microbiota: An Overview.	Fabiano V, Indrio F, Verduci E, Calcaterra V, Pop TL, Mari A, Zuccotti GV, Cullu Cokugras F, Pettoello-Mantovani M, Goulet O.	Nutrients	10.3390/nu13124200	2021
	Role of microbiota in radiation-induced small-bowel damage.	Chen YF, Li SC, Huang EY.	J Radiat Res	10.1093/jrr/rrad084	2024
Pathogenicity	Clinical Efficacy of Probiotics for Allergic Rhinitis: Results of an Exploratory Randomized Controlled Trial.	Lungaro L, Malfa P, Manza F, Costanzini A, Valentini G, Squarzanti DF, Viciani E, Velichevskaya A, Castagnetti A, Barbalinardo M, Gentili D, Cariani A, Ghisellini S, Caputo F, De Giorgio R, Caio G.	Nutrients	10.3390/nu16234173	2024
Pathogenicity	Amoxicillin-Clavulanic Acid Resistance in the Genus Bifidobacterium.	Mancabelli L, Mancino W, Lugli GA, Argentini C, Longhi G, Milani C, Viappiani A, Anzalone R, Bernasconi S, van Sinderen D, Ventura M, Turroni F.	Appl Environ Microbiol	10.1128/aem.03137-20	2021
Metabolism	In Vivo Bioluminescence Imaging of Intratumoral Bacteria.	Cronin M, Akin AR, Francis KP, Tangney M.	Methods Mol Biol	10.1007/978-1-4939-3515-4_7	2016
	Lactiplantibacillus plantarum for the Preparation of Fermented Low-Bitter Enzymatic Skim Milk with Antioxidant Ability.	Jiang Y, Zhang L, Jin Y, Xu H, Liang Y, Xia Z, Zhang C, Guan C, Qu H, Wa Y, Wang W, Huang Y, Gu R, Chen D.	Foods	10.3390/foods13233828	2024
	Extraction, Characterization, Biological Properties, and X-Ray Fluorescence Analysis of Functional Polysaccharides Derived from Limnospira platensis	Pan-utai W, Phomkaivon N, Settachaimongkon S, Pongponpai P, Songsiriritthigul C.	Life (Basel)		2025
	Increasing cellular fitness and product yields in Pseudomonas putida through an engineered phosphoketolase shunt.	Bruinsma L, Martin-Pascual M, Kurnia K, Tack M, Hendriks S, van Kranenburg R, Dos Santos VAPM.	Microb Cell Fact	10.1186/s12934-022-02015-9	2023
	Alternation of the gut microbiota in irritable bowel syndrome: an integrated analysis based on multicenter amplicon sequencing data.	Chen H, Ou R, Tang N, Su W, Yang R, Yu X, Zhang G, Jiao J, Zhou X.	J Transl Med	10.1186/s12967-023-03953-7	2023
	The effect of oral probiotics on CD4 count in patients with HIV infection undergoing treatment with ART who have had an immunological failure.	Mortezazadeh M, Kalantari S, Abolghasemi N, Ranjbar M, Ebrahimi S, Mofidi A, Pezeshkpour B, Mansouri ES, Tabatabaei SZ, Kashani M.	Immun Inflamm Dis	10.1002/iid3.913	2023
	Comparative in silico and in vivo study of the antioxidant activity of lactoferrin, Geobacillus stearothermophilus, and Lactobacillus delbrueckii subsp. lactis against Rotavirus infection in male mice.	Ismail TAM, Elshafey N, Talat SE, Saif ME, Hegab AM, Dossouvi KM, Alharbi HM, Elkelish A, Ghany KAE.	BMC Microbiol	10.1186/s12866-025-03820-z	2025
	Bifidobacterium breve alters immune function and ameliorates DSS-induced inflammation in weanling rats.	Izumi H, Minegishi M, Sato Y, Shimizu T, Sekine K, Takase M.	Pediatr Res	10.1038/pr.2015.115	2015
	Infantile Colic Is Associated With Low-grade Systemic Inflammation.	Partty A, Kalliomaki M, Salminen S, Isolauri E.	J Pediatr Gastroenterol Nutr	10.1097/mpg.0000000000001340	2017
Metabolism	Bifidobacterial inulin-type fructan degradation capacity determines cross-feeding interactions between bifidobacteria and Faecalibacterium prausnitzii.	Moens F, Weckx S, De Vuyst L.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2016.05.015	2016
Metabolism	Mucin Cross-Feeding of Infant Bifidobacteria and Eubacterium hallii.	Bunesova V, Lacroix C, Schwab C.	Microb Ecol	10.1007/s00248-017-1037-4	2018
	Probiotics in Allergy and Immunological Diseases: A Comprehensive Review.	Vijayan S, Kandi V, Palacholla PS, Rajendran R, Jarugu C, Ca J, Pravallika M, Reddy SC, Sucharitha AS.	Cureus	10.7759/cureus.55817	2024
	The natural symbiotic bacterium Enterococcus faecalis LX10 drives Bombyx mori refractoriness to Nosema bombycis infection via the secretion of enterococcin.	Zhang X, Yang L, Cai T, Liao H, Cai P, Zhao X, Gu N, Yue Z, Gu Y, Zhang F, Wu C, Lu X.	BMC Microbiol	10.1186/s12866-025-03980-y	2025
Pathogenicity	Research on preventive effect of Akkermansia muciniphilaAKK PROBIO on acute gouty arthritis in mice.	Ma X, Zhu N, Yu X, Wang W, Wu W.	Food Sci Nutr	10.1002/fsn3.4367	2024
	Evaluating the antibacterial, antibiofilm, and anti-toxigenic effects of postbiotics from lactic acid bacteria on Clostridium difficile.	Asghari Ozma M, Mahmoodzadeh Hosseini H, Ataee MH, Mirhosseini SA.	Iran J Microbiol	10.18502/ijm.v16i4.16309	2024
Phylogeny	Gut Microbiota Diversity of Preterm Neonates Is Associated With Clostridioides Difficile Colonization.	Couturier J, Lepage P, Jolivet S, Delannoy J, Mesa V, Ancel PY, Roze JC, Butel MJ, Barbut F, Aires J.	Front Cell Infect Microbiol	10.3389/fcimb.2022.907323	2022
	Dietary Modulation of Metabolic Health: From Bioactive Compounds to Personalized Nutrition.	Leziak A, Lipina J, Reclik M, Kocelak P.	Metabolites	10.3390/metabo15090624	2025
	A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidity in elective caesarean born infants.	Lay C, Chu CW, Purbojati RW, Acerbi E, Drautz-Moses DI, de Sessions PF, Jie S, Ho E, Kok YJ, Bi X, Chen S, Mak SY, Chua MC, Goh AEN, Chiang WC, Rao R, Chaithongwongwatthana S, Khemapech N, Chongsrisawat V, Martin R, JULIUS Study Group, Roeselers G, Ho YS, Hibberd ML, Schuster SC, Knol J.	BMC Microbiol	10.1186/s12866-021-02230-1	2021
Pathogenicity	Primary Human Dendritic Cells and Whole-Blood Based Assays to Evaluate Immuno-Modulatory Properties of Heat-Killed Commensal Bacteria.	Norton JE, Kommineni S, Akrivoulis P, Gutierrez DA, Hazuda DJ, Swaminathan G.	Vaccines (Basel)	10.3390/vaccines9030225	2021
	Probing the functional and therapeutic properties of postbiotics in relation to their industrial application.	Asif A, Afzaal M, Shahid H, Saeed F, Ahmed A, Shah YA, Ejaz A, Ghani S, Ateeq H, Khan MR.	Food Sci Nutr	10.1002/fsn3.3465	2023
	Inulin supplementation exhibits increased muscle mass via gut-muscle axis in children with obesity: double evidence from clinical and in vitro studies.	Visuthranukul C, Leelahavanichkul A, Tepaamorndech S, Chamni S, Mekangkul E, Chomtho S.	Sci Rep	10.1038/s41598-024-61781-1	2024
	Microglia are necessary for probiotics supplementation to improve impaired fear extinction caused by pregnancy stress in adult offspring of rats.	Zeng R, Chen J, Peng Y, Xu W, Tao Y, Li M, Zhang R, Meng J, Li Z, Zeng L, Huang J.	Neurobiol Stress	10.1016/j.ynstr.2023.100591	2024
Pathogenicity	New genetic environments of the macrolide-lincosamide-streptogramin resistance determinant erm(X) and their influence on potential horizontal transferability in bifidobacteria.	Wang N, Hang X, Zhang M, Peng X, Yang H.	Int J Antimicrob Agents	10.1016/j.ijantimicag.2017.04.007	2017
	Effects of Italian Mediterranean Organic Diet on the Gut Microbiota: A Pilot Comparative Study with Conventional Products and Free Diet.	Di Renzo L, Frank G, Pala B, Cianci R, La Placa G, Raffaelli G, Palma R, Peluso D, De Lorenzo A, Gualtieri P, On Behalf Of Clinical Nutrition And Nutrigenomics Project Group.	Microorganisms	10.3390/microorganisms13071694	2025
	Prebiotic effect of galacto-N-biose on the intestinal lactic acid bacteria as enhancer of acetate production and hypothetical colonization.	Matsuzaki C, Takagi H, Saiga S, Kinoshita Y, Yamaguchi M, Higashimura Y, Yamamoto K, Yamaguchi M.	Appl Environ Microbiol	10.1128/aem.01445-23	2024
	Administration of Bifidobacterium breve Decreases the Production of TNF-alpha in Children with Celiac Disease.	Klemenak M, Dolinsek J, Langerholc T, Di Gioia D, Micetic-Turk D.	Dig Dis Sci	10.1007/s10620-015-3769-7	2015
	Topical Probiotic Hydrogels for Burn Wound Healing.	Arshad T, Mundrathi V, Perez VE, Nunez JM, Cho H.	Gels	10.3390/gels10090545	2024
Metabolism	The Interplay between Gut Microbiota and Oral Medications and Its Impact on Advancing Precision Medicine.	Mousa S, Sarfraz M, Mousa WK.	Metabolites	10.3390/metabo13050674	2023
	Impact of probiotics on gut microbiota composition and clinical symptoms of coeliac disease patients following gluten-free diet.	Soheilian Khorzoghi M, Rostami-Nejad M, Yadegar A, Dabiri H, Hadadi A, Rodrigo L.	Contemp Clin Trials Commun	10.1016/j.conctc.2023.101201	2023
	Pterostilbene attenuates intestinal barrier damage and secondary liver oxidative stress in a murine model of Clostridium difficile infection by regulating the gut microbiota.	Yang H, Kuang Y, Wang L, Ma X, Galvez JAV, Lu J, Dai Y, Liu S, Yao J, Chen X, Cao Y.	Food Funct	10.1039/d4fo06413e	2025
	A novel C-type lectin from the sea cucumber Apostichopus japonicus (AjCTL-2) with preferential binding of d-galactose.	Wang H, Xue Z, Liu Z, Wang W, Wang F, Wang Y, Wang L, Song L.	Fish Shellfish Immunol	10.1016/j.fsi.2018.05.021	2018
Metabolism	Gut Microbiome Profile After Pancreatectomy in Infants With Congenital Hyperinsulinism.	Vajravelu ME, Lee JJ, Mitteer L, Zemel BS, Bittinger K, De Leon DD.	Pancreas	10.1097/mpa.0000000000001708	2021
	Evaluating the Efficacy of Probiotics on Disease Progression, Quality of Life, and Nutritional Status Among Patients with Crohn's Disease: A Multicenter, Randomized, Single-Blinded Controlled Trial.	Hoteit M, Hellani M, Karaja M, Zayour N, Sadek Z, Hotayt B, Hallal M.	Nutrients	10.3390/nu17040708	2025
	Oral Administration of Probiotic Bacteria Alleviates Tau Phosphorylation, Abeta Accumulation, Microglia Activation, and Memory Loss in 5xFAD Mice.	Kim YJ, Mun BR, Choi KY, Choi WS.	Brain Sci	10.3390/brainsci14030208	2024
	Add-On Bifidobacterium Bifidum Supplement in Children with Attention-Deficit/Hyperactivity Disorder: A 12-Week Randomized Double-Blind Placebo-Controlled Clinical Trial.	Wang LJ, Tsai CS, Chou WJ, Kuo HC, Huang YH, Lee SY, Dai HY, Yang CY, Li CJ, Yeh YT.	Nutrients	10.3390/nu16142260	2024
	A review of fermented milks: potential beneficial effects on human nutrition and health.	Yerlikaya O.	Afr Health Sci	10.4314/ahs.v23i4.54	2023
Metabolism	Ecological Importance of Cross-Feeding of the Intermediate Metabolite 1,2-Propanediol between Bacterial Gut Symbionts.	Cheng CC, Duar RM, Lin X, Perez-Munoz ME, Tollenaar S, Oh JH, van Pijkeren JP, Li F, van Sinderen D, Ganzle MG, Walter J.	Appl Environ Microbiol	10.1128/aem.00190-20	2020
	Uptake of fucosylated type I human milk oligosaccharide blocks by Bifidobacterium longum subsp. infantis.	Ejby Hansen M, Sakanaka M, Jensen M, Sakanaka H, Pichler MJ, Maeda S, Franck Hovring J, Nakajima A, Kunstmann S, Nielsen TS, Peters GHJ, Slotboom DJ, Morth JP, Katayama T, Abou Hachem M.	mBio	10.1128/mbio.00368-25	2025
Metabolism	A GntR-type transcriptional repressor controls sialic acid utilization in Bifidobacterium breve UCC2003.	Egan M, O'Connell Motherway M, van Sinderen D.	FEMS Microbiol Lett	10.1093/femsle/fnu056	2015
	Clostridium butyricum Prevents Dysbiosis and the Rise in Blood Pressure in Spontaneously Hypertensive Rats.	Luo X, Han Z, Kong Q, Wang Y, Mou H, Duan X.	Int J Mol Sci	10.3390/ijms24054955	2023
	The role of probiotics, prebiotics, and synbiotics in the treatment of inflammatory bowel diseases: an overview of recent clinical trials	Yassine F, Najm A, Bilen M.	Front Syst Biol		2025
Genetics	Integrating compositional and functional content to describe vaginal microbiomes in health and disease.	Holm JB, France MT, Gajer P, Ma B, Brotman RM, Shardell M, Forney L, Ravel J.	Microbiome	10.1186/s40168-023-01692-x	2023
	Effect of a synbiotic on functional abdominal pain in childhood.	Gholizadeh A, Mehrabani S, Esmaeili Dooki M, Haji Ahmadi M.	Caspian J Intern Med	10.22088/cjim.12.2.194	2021
	Pharmacological Management for Pediatric Irritable Bowel Syndrome: A Review.	Alyasi AS, Altawili MA, Alabbadi AF, Hamdi AHA, Alshammery AS, Alfahad MI, Alamri RM, Alanazi TR, Harbi MHA, Alajmi AM, Alabdulrahim JM, Alalshaikh AM, Hanbzazah AM.	Cureus	10.7759/cureus.49197	2023
	Efficacy and safety of gut microbiota-based therapies in autoimmune and rheumatic diseases: a systematic review and meta-analysis of 80 randomized controlled trials.	Zeng L, Yang K, He Q, Zhu X, Long Z, Wu Y, Chen J, Li Y, Zeng J, Cui G, Xiang W, Hao W, Sun L.	BMC Med	10.1186/s12916-024-03303-4	2024
	Capability of the two microorganisms Bifidobacterium breve B632 and Bifidobacterium breve BR03 to colonize the intestinal microbiota of children.	Mogna L, Del Piano M, Mogna G.	J Clin Gastroenterol	10.1097/mcg.0000000000000234	2014
Genetics	A metagenomic approach to unveil the association between fecal gut microbiota and short-chain fatty acids in diarrhea caused by diarrheagenic Escherichia coli in children.	Gallardo P, Izquierdo M, Viver T, Bustos-Caparros E, Piras D, Vidal RM, Harmsen HMJ, Farfan MJ.	Microb Cell	10.15698/mic2024.04.820	2024
Metabolism	Biotransformation of rutin to isoquercitrin using recombinant alpha-L-rhamnosidase from Bifidobacterium breve.	Zhang R, Zhang BL, Xie T, Li GC, Tuo Y, Xiang YT.	Biotechnol Lett	10.1007/s10529-015-1792-6	2015
	Bifidobacterium exopolysaccharides: new insights into engineering strategies, physicochemical functions, and immunomodulatory effects on host health.	Sadeghi M, Haghshenas B, Nami Y.	Front Microbiol	10.3389/fmicb.2024.1396308	2024
	Advanced fructo-oligosaccharides improve itching and aberrant epidermal lipid composition in children with atopic dermatitis.	Kim S, Kang BG, Sa S, Park SY, Ryu K, Lee J, Park B, Kwon M, Kim Y, Kim J, Shin S, Jang S, Kim BE, Bae J, Ahn K, Liu KH, Kim J.	Front Microbiol	10.3389/fmicb.2024.1383779	2024
Pathogenicity	Production of Gypenoside XVII from Ginsenoside Rb1 by Enzymatic Transformation and Their Anti-Inflammatory Activity In Vitro and In Vivo.	Zhou K, Zhang Y, Zhou Y, Xu M, Yu S.	Molecules	10.3390/molecules28197001	2023
	Human milk microbiota, oligosaccharide profiles, and infant gut microbiome in preterm infants diagnosed with necrotizing enterocolitis.	Masi AC, Beck LC, Perry JD, Granger CL, Hiorns A, Young GR, Bode L, Embleton ND, Berrington JE, Stewart CJ.	Cell Rep Med	10.1016/j.xcrm.2024.101708	2024
	Vaginal Microbiome and Pregnancy Complications: A Review	Gerede A, Nikolettos K, Vavoulidis E, Margioula-Siarkou C, Petousis S, Giourga M, Fotinopoulos P, Salagianni M, Stavros S, Dinas K, Nikolettos N, Domali E.	J Clin Med		2024
Phylogeny	A probiotic combination attenuates experimental colitis through inhibition of innate cytokine production.	Kim MS, Byun JS, Yoon YS, Yum DY, Chung MJ, Lee JC.	Benef Microbes	10.3920/bm2016.0031	2017
	Synergistic effects of the early administration of Lactobacillus kefiranofaciens DN1 and Kluyveromyces marxianus KU140723-05 on the inhibition of Salmonella Enteritidis colonization in young chickens.	Bae D, Kim DH, Chon JW, Song KY, Seo KH.	Poult Sci	10.1016/j.psj.2020.07.032	2020
	Synbiotic intervention reverses alcohol drinking-induced cognitive deficits in adolescent male mice by modulating the microbiota-gut-brain axis.	Barrera-Conde M, Korchevaya E, Kossatz E, Veza E, Pujadas M, Alechaga E, Nebot P, Pozo OJ, de la Torre R, Pizarro N, Robledo P.	Gut Microbes	10.1080/19490976.2025.2551104	2025
	Gut Microbiota in Celiac Disease: Is There Any Role for Probiotics?	Pecora F, Persico F, Gismondi P, Fornaroli F, Iuliano S, de'Angelis GL, Esposito S.	Front Immunol	10.3389/fimmu.2020.00957	2020
	A case of Scalp Rosacea treated with low dose doxycycline and probiotic therapy and literature review on therapeutic options.	Fortuna MC, Garelli V, Pranteda G, Romaniello F, Cardone M, Carlesimo M, Rossi A.	Dermatol Ther	10.1111/dth.12355	2016
	Clinical efficacy of synbiotics in children with allergic rhinitis: An observational cohort study from a private medical center in Peru.	Galvan Calle CA, Diaz Vasquez C, Munoz Leon R, Matos Benavides EE, Verde Leon AV.	Immun Inflamm Dis	10.1002/iid3.736	2022
	Bifidobacterium breve BBG-001 in very preterm infants: a randomised controlled phase 3 trial.	Costeloe K, Hardy P, Juszczak E, Wilks M, Millar MR, Probiotics in Preterm Infants Study Collaborative Group.	Lancet	10.1016/s0140-6736(15)01027-2	2016
	Acceptability, Tolerability, and Estimates of Putative Treatment Effects of Probiotics as Adjunctive Treatment in Patients With Depression: A Randomized Clinical Trial.	Nikolova VL, Cleare AJ, Young AH, Stone JM.	JAMA Psychiatry	10.1001/jamapsychiatry.2023.1817	2023
	A case of massive refractory diarrhea in a patient with COVID-19.	Shimizu K, Hirata H, Tokuhira N, Ueda A, Motooka D, Nakamura S, Ogura H.	Acute Med Surg	10.1002/ams2.793	2022
	Probiotics and Probiotic-like Agents against Chemotherapy-Induced Intestinal Mucositis: A Narrative Review.	Lopez-Gomez L, Alcorta A, Abalo R.	J Pers Med	10.3390/jpm13101487	2023
Genetics	Genome sequence and evaluation of safety and probiotic potential of Lacticaseibacillus paracasei LC86 and Lacticaseibacillus casei LC89.	Chen T, Zhao Y, Fan Y, Dong Y, Gai Z.	Front Microbiol	10.3389/fmicb.2024.1501502	2024
	"Microbial and immune modulation by 2'-fucosyllactose supplementation during gestation: a strategy to prevent food allergies".	Brosseau C, Rousseaux A, Le Romancer M, Ropers MH, Lollier V, De Carvalho M, Barbarot S, Bodinier M.	Gut Microbes	10.1080/19490976.2025.2523813	2025
	Probiotic consumption and hepatic steatosis: results from the NHANES 2011-2016 and Mendelian randomization study.	Song Y, Guo W, Wang J, Liu S, Li Z, Li Y.	Front Nutr	10.3389/fnut.2024.1334935	2024
	Study on the Biochemical Characterization and Selectivity of Three beta-Glucosidases From Bifidobacterium adolescentis ATCC15703.	Hu Y, Zhai L, Hong H, Shi Z, Zhao J, Liu D.	Front Microbiol	10.3389/fmicb.2022.860014	2022
	The Role of Intestinal Microbiota in Celiac Disease and Further Therapeutic Perspectives.	Belei O, Juganaru I, Basaca DG, Munteanu AI, Marginean O.	Life (Basel)	10.3390/life13102039	2023
Metabolism	Galacto- and Fructo-oligosaccharides Utilized for Growth by Cocultures of Bifidobacterial Species Characteristic of the Infant Gut.	Sims IM, Tannock GW.	Appl Environ Microbiol	10.1128/aem.00214-20	2020
Enzymology	Ventriculoperitoneal shunt infection caused by Bifidobacterium breve.	Suwantarat N, Romagnoli M, Wakefield T, Carroll KC.	Anaerobe	10.1016/j.anaerobe.2014.04.003	2014
Phylogeny	Species-level resolution for the vaginal microbiota with short amplicons.	Qing W, Shi Y, Chen R, Zou Y, Qi C, Zhang Y, Zhou Z, Li S, Hou Y, Zhou H, Chen M.	mSystems	10.1128/msystems.01039-23	2024
	Longitudinal gut microbiota composition of South African and Nigerian infants in relation to tetanus vaccine responses.	Iwase SC, Osawe S, Happel A-U, Gray CM, Holmes SP, Blackburn JM, Abimiku A, Jaspan HB.	Microbiol Spectr	10.1128/spectrum.03190-23	2024
	Gut Microbiome Composition in Patients with Chronic Urticaria: A Review of Current Evidence and Data.	Kristo M, Lugovic-Mihic L, Munoz M, Rupnik M, Mahnic A, Ozretic P, Jaganjac M, Cesic D, Kuna M.	Life (Basel)	10.3390/life13010152	2023
	Probiotic Bifidobacterium breve in Improving Cognitive Functions of Older Adults with Suspected Mild Cognitive Impairment: A Randomized, Double-Blind, Placebo-Controlled Trial.	Xiao J, Katsumata N, Bernier F, Ohno K, Yamauchi Y, Odamaki T, Yoshikawa K, Ito K, Kaneko T.	J Alzheimers Dis	10.3233/jad-200488	2020
	Minocycline and Its Impact on Microbial Dysbiosis in the Skin and Gastrointestinal Tract of Acne Patients.	Thompson KG, Rainer BM, Antonescu C, Florea L, Mongodin EF, Kang S, Chien AL.	Ann Dermatol	10.5021/ad.2020.32.1.21	2020
Metabolism	Metabolism of four alpha-glycosidic linkage-containing oligosaccharides by Bifidobacterium breve UCC2003.	O'Connell KJ, O'Connell Motherway M, O'Callaghan J, Fitzgerald GF, Ross RP, Ventura M, Stanton C, van Sinderen D.	Appl Environ Microbiol	10.1128/aem.01775-13	2013
Metabolism	Glucuronides in the gut: Sugar-driven symbioses between microbe and host.	Pellock SJ, Redinbo MR.	J Biol Chem	10.1074/jbc.r116.767434	2017
Metabolism	Metabolism of a plant derived galactose-containing polysaccharide by Bifidobacterium breve UCC2003.	O'Connell Motherway M, Fitzgerald GF, van Sinderen D.	Microb Biotechnol	10.1111/j.1751-7915.2010.00218.x	2011
Enzymology	Overcoming the restriction barrier to plasmid transformation and targeted mutagenesis in Bifidobacterium breve UCC2003.	O'Connell Motherway M, O'Driscoll J, Fitzgerald GF, Van Sinderen D.	Microb Biotechnol	10.1111/j.1751-7915.2008.00071.x	2009
Metabolism	Transport of glucose by Bifidobacterium animalis subsp. lactis occurs via facilitated diffusion.	Briczinski EP, Phillips AT, Roberts RF.	Appl Environ Microbiol	10.1128/aem.01280-08	2008
Metabolism	Induction of sucrose utilization genes from Bifidobacterium lactis by sucrose and raffinose.	Trindade MI, Abratt VR, Reid SJ.	Appl Environ Microbiol	10.1128/aem.69.1.24-32.2003	2003
Phylogeny	Imbalances in faecal and duodenal Bifidobacterium species composition in active and non-active coeliac disease.	Collado MC, Donat E, Ribes-Koninckx C, Calabuig M, Sanz Y.	BMC Microbiol	10.1186/1471-2180-8-232	2008
	Development of a Rapid Method for the Screening of Conjugated Linoleic Acid (CLA)-Producing Strains of Bifidobacterium breve.	Choi SH, Lee KM, Kim KH, Kim GB.	Korean J Food Sci Anim Resour	10.5851/kosfa.2018.e34	2018
	Amylase-Producing Maltooligosaccharide Provides Potential Relief in Rats with Loperamide-Induced Constipation.	Jang EY, Ahn Y, Suh HJ, Hong KB, Jo K.	Evid Based Complement Alternat Med	10.1155/2020/5470268	2020
Phylogeny	Microbial community and metabolomic comparison of irritable bowel syndrome faeces.	Ponnusamy K, Choi JN, Kim J, Lee SY, Lee CH.	J Med Microbiol	10.1099/jmm.0.028126-0	2011
	Reviewing the potential of probiotics, prebiotics and synbiotics: advancements in treatment of ulcerative colitis.	Jadhav A, Jagtap S, Vyavahare S, Sharbidre A, Kunchiraman B.	Front Cell Infect Microbiol	10.3389/fcimb.2023.1268041	2023
	Therapeutic Anti-Depressant Potential of Microbial GABA Produced by Lactobacillus rhamnosus Strains for GABAergic Signaling Restoration and Inhibition of Addiction-Induced HPA Axis Hyperactivity.	Tette FM, Kwofie SK, Wilson MD.	Curr Issues Mol Biol	10.3390/cimb44040096	2022
	Designing primers and evaluation of the efficiency of propidium monoazide - Quantitative polymerase chain reaction for counting the viable cells of Lactobacillus gasseri and Lactobacillus salivarius.	Lai CH, Wu SR, Pang JC, Ramireddy L, Chiang YC, Lin CK, Tsen HY.	J Food Drug Anal	10.1016/j.jfda.2016.10.004	2017
	Short-communication: Study of fatty acid metabolites in microbial conjugated fatty acids-enrichment of milk and discovery of additional undescribed conjugated linolenic acid isomers.	Fontes AL, Neves B, Conde T, Couto D, Pimentel LL, Rodriguez-Alcala LM, Domingues MR, Gomes AM.	Food Chem	10.1016/j.foodchem.2023.137276	2024
	Study of the viability of using lipase-hydrolyzed commercial vegetable oils to produce microbially conjugated linolenic acid-enriched milk.	Fontes AL, Pimentel LL, Soares AMS, Domingues MDR, Rodriguez-Alcala LM, Gomes AM.	Food Chem	10.1016/j.foodchem.2023.135665	2023
	Biosynthesis and health promoting traits of green synthesized cobalt oxide nanoparticles.	Moawad R, Abdallah Y, Mohany M, Al-Rejaie SS, Djurasevic S, Ramadan MF, Mousa AB.	Sci Rep	10.1038/s41598-024-82679-y	2025
	RNA-Based Anti-Inflammatory Effects of Membrane Vesicles Derived from Lactiplantibacillus plantarum.	Yamasaki-Yashiki S, Kawashima F, Saika A, Hosomi R, Kunisawa J, Katakura Y.	Foods	10.3390/foods13060967	2024
	Construction of a reporter system for bifidobacteria using chloramphenicol acetyltransferase and its application for evaluation of promoters and terminators.	Kozakai T, Shimofusa Y, Nomura I, Suzuki T.	Biosci Microbiota Food Health	10.12938/bmfh.2020-070	2021
	Viability assessment of Bifidobacterium longum ATCC 15707 on non-dairy foods using quantitative fluorescence microscopy.	Min M, Mason SL, Bennett GN, Hussain MA, Bunt CR.	J Microbiol Methods	10.1016/j.mimet.2019.105778	2019
	Substrate recognition mode of a glycoside hydrolase family 42 beta-galactosidase from Bifidobacterium longum subspecies infantis (BiBga42A) revealed by crystallographic and mutational analyses.	Gotoh A, Hidaka M, Sakurama H, Nishimoto M, Kitaoka M, Sakanaka M, Fushinobu S, Katayama T.	Microbiome Res Rep	10.20517/mrr.2023.14	2023
	Adhesion mechanisms of Bifidobacterium animalis subsp. lactis JCM 10602 to dietary fiber.	Taniguchi M, Nambu M, Katakura Y, Yamasaki-Yashiki S.	Biosci Microbiota Food Health	10.12938/bmfh.2020-003	2021
	In vitro and in vivo evaluation of the prebiotic effect of raw and roasted almonds (Prunus amygdalus)	Liu Z, Wang W, Huang G, Zhang W, Ni L.	Journal of the Science of Food and Agriculture.		2016
	Bifunctional Systems of Amelanchier alnifolia Leaves Extract-Oligosaccharides with Prebiotic and Antidiabetic Benefits	Gosciniak A, Sip A, Szulc P, Cielecka-Piontek J.	Molecules		2025
	Preferential sugar utilization by bifidobacterial species.	Murakami R, Yoshida K, Sakanaka M, Urashima T, Xiao JZ, Katayama T, Odamaki T.	Microbiome Res Rep	10.20517/mrr.2023.19	2023
	Methionine utilization by bifidobacteria: possible existence of a reverse transsulfuration pathway.	Wada M, Fukiya S, Suzuki A, Matsumoto N, Matsuo M, Yokota A.	Biosci Microbiota Food Health	10.12938/bmfh.2020-031	2021
Metabolism	Structural Identity of Galactooligosaccharide Molecules Selectively Utilized by Single Cultures of Probiotic Bacterial Strains.	Boger M, van Leeuwen SS, Lammerts van Bueren A, Dijkhuizen L.	J Agric Food Chem	10.1021/acs.jafc.9b05968	2019
Pathogenicity	Effects of Pretreatment with Bifidobacterium bifidum Using 16S Ribosomal RNA Gene Sequencing in a Mouse Model of Acute Colitis Induced by Dextran Sulfate Sodium.	Weng YJ, Jiang DX, Liang J, Ye SC, Tan WK, Yu CY, Zhou Y.	Med Sci Monit	10.12659/msm.928478	2021
Genetics	Resource sharing of an infant gut microbiota synthetic community in combinations of human milk oligosaccharides.	Ioannou A, Berkhout MD, Scott WT, Blijenberg B, Boeren S, Mank M, Knol J, Belzer C.	ISME J	10.1093/ismejo/wrae209	2024
	The determination of viable counts in probiotic cultures microencapsulated by spray-coating.	Champagne CP, Raymond Y, Tompkins TA.	Food Microbiol	10.1016/j.fm.2010.07.017	2010
	Impact of bacteriocin-producing strains on bacterial community composition in a simplified human intestinal microbiota.	Rios Colombo NS, Perez-Ibarreche M, Draper LA, O'Connor PM, Field D, Ross RP, Hill C.	Front Microbiol	10.3389/fmicb.2023.1290697	2023
Enzymology	Identification of difructose dianhydride I synthase/hydrolase from an oral bacterium establishes a novel glycoside hydrolase family.	Kashima T, Okumura K, Ishiwata A, Kaieda M, Terada T, Arakawa T, Yamada C, Shimizu K, Tanaka K, Kitaoka M, Ito Y, Fujita K, Fushinobu S.	J Biol Chem	10.1016/j.jbc.2021.101324	2021
	Lyophilized Probiotic Lactic Acid Bacteria Viability in Potato Chips and Its Impact on Oil Oxidation.	Mostafa H.	Foods	10.3390/foods9050586	2020
	Characterization and induction of prophages in human gut-associated Bifidobacterium hosts.	Mavrich TN, Casey E, Oliveira J, Bottacini F, James K, Franz CMAP, Lugli GA, Neve H, Ventura M, Hatfull GF, Mahony J, van Sinderen D.	Sci Rep	10.1038/s41598-018-31181-3	2018
	GH20 and GH84 beta-N-acetylglucosaminidases with different linkage specificities underpin mucin O-glycan breakdown capability of Bifidobacterium bifidum.	Takada H, Katoh T, Sakanaka M, Odamaki T, Katayama T.	J Biol Chem	10.1016/j.jbc.2023.104781	2023
Pathogenicity	Comprehensive evaluation of the bactericidal activities of free bile acids in the large intestine of humans and rodents.	Watanabe M, Fukiya S, Yokota A.	J Lipid Res	10.1194/jlr.m075143	2017
	Beneficial Effect of Bifidobacterium longum ATCC 15707 on Survival Rate of Clostridium difficile Infection in Mice.	Yun B, Song M, Park DJ, Oh S.	Korean J Food Sci Anim Resour	10.5851/kosfa.2017.37.3.368	2017
Metabolism	Kinetics of Bifidobacterium longum ATCC 15707 fermentations: effect of the dilution rate and carbon source.	Shene C, Mardones M, Zamora P, Bravo S.	Appl Microbiol Biotechnol	10.1007/s00253-004-1792-2	2005
	Plant Prebiotics and Their Role in the Amelioration of Diseases.	Kaur AP, Bhardwaj S, Dhanjal DS, Nepovimova E, Cruz-Martins N, Kuca K, Chopra C, Singh R, Kumar H, Sen F, Kumar V, Verma R, Kumar D.	Biomolecules	10.3390/biom11030440	2021
Enzymology	Purification and characterization of three different types of bile salt hydrolases from Bifidobacterium strains.	Kim GB, Yi SH, Lee BH.	J Dairy Sci	10.3168/jds.s0022-0302(04)73164-1	2004
	Quantitative determination of the spatial distribution of pure- and mixed-strain immobilized cells in gel beads by immunofluorescence.	Doleyres Y, Fliss I, Lacroix C.	Appl Microbiol Biotechnol	10.1007/s00253-002-1004-x	2002
	In vitro inhibitory activity of Bifidobacterium longum BB536 and Lactobacillus rhamnosus HN001 alone or in combination against bacterial and Candida reference strains and clinical isolates.	Inturri R, Trovato L, Volti GL, Oliveri S, Blandino G.	Heliyon	10.1016/j.heliyon.2019.e02891	2019
	Heat-Killed Lactobacillus salivarius and Lactobacillus johnsonii Reduce Liver Injury Induced by Alcohol In Vitro and In Vivo.	Chuang CH, Tsai CC, Lin ES, Huang CS, Lin YY, Lan CC, Huang CC.	Molecules	10.3390/molecules21111456	2016
	Antioxidative effect of intestinal bacteria Bifidobacterium longum ATCC 15708 and Lactobacillus acidophilus ATCC 4356.	Lin MY, Chang FJ.	Dig Dis Sci	10.1023/a:1005577330695	2000
	Comparison of Yacon (Smallanthus sonchifolius) Tuber with Commercialized Fructo-oligosaccharides (FOS) in Terms of Physiology, Fermentation Products and Intestinal Microbial Communities in Rats.	Utami NW, Sone T, Tanaka M, Nakatsu CH, Saito A, Asano K.	Biosci Microbiota Food Health	10.12938/bmfh.32.167	2013
	Multistrain probiotic preparation significantly reduces symptoms of irritable bowel syndrome in a double-blind placebo-controlled study.	Cui S, Hu Y.	Int J Clin Exp Med		2012
Phylogeny	Selection of species-specific DNA probes which detect strain restriction polymorphism in four Bifidobacterium species.	Mangin I, Bourget N, Simonet JM, Decaris B.	Res Microbiol	10.1016/0923-2508(96)80271-3	1995
	Chronic Stress-Induced Depression and Anxiety Priming Modulated by Gut-Brain-Axis Immunity.	Westfall S, Caracci F, Estill M, Frolinger T, Shen L, Pasinetti GM.	Front Immunol	10.3389/fimmu.2021.670500	2021
Phylogeny	Establishment of an analytical system for the human fecal microbiota, based on reverse transcription-quantitative PCR targeting of multicopy rRNA molecules.	Matsuda K, Tsuji H, Asahara T, Matsumoto K, Takada T, Nomoto K.	Appl Environ Microbiol	10.1128/aem.01843-08	2009
	Valorization of waste forest biomass toward the production of cello-oligosaccharides with potential prebiotic activity by utilizing customized enzyme cocktails.	Karnaouri A, Matsakas L, Krikigianni E, Rova U, Christakopoulos P.	Biotechnol Biofuels	10.1186/s13068-019-1628-z	2019
Pathogenicity	Microbiota metabolites modulate the T helper 17 to regulatory T cell (Th17/Treg) imbalance promoting resilience to stress-induced anxiety- and depressive-like behaviors.	Westfall S, Caracci F, Zhao D, Wu QL, Frolinger T, Simon J, Pasinetti GM.	Brain Behav Immun	10.1016/j.bbi.2020.10.013	2021
	Intestinal microbiota succession and immunomodulatory consequences after introduction of Lactobacillus reuteri I5007 in neonatal piglets.	Hou C, Liu H, Zhang J, Zhang S, Yang F, Zeng X, Thacker PA, Zhang G, Qiao S.	PLoS One	10.1371/journal.pone.0119505	2015
Enzymology	Development of 16S rRNA-gene-targeted group-specific primers for the detection and identification of predominant bacteria in human feces.	Matsuki T, Watanabe K, Fujimoto J, Miyamoto Y, Takada T, Matsumoto K, Oyaizu H, Tanaka R.	Appl Environ Microbiol	10.1128/aem.68.11.5445-5451.2002	2002
Pathogenicity	In vivo selection to identify bacterial strains with enhanced ecological performance in synbiotic applications.	Krumbeck JA, Maldonado-Gomez MX, Martinez I, Frese SA, Burkey TE, Rasineni K, Ramer-Tait AE, Harris EN, Hutkins RW, Walter J.	Appl Environ Microbiol	10.1128/aem.03903-14	2015
Genetics	Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes.	Magnusdottir S, Ravcheev D, de Crecy-Lagard V, Thiele I.	Front Genet	10.3389/fgene.2015.00148	2015
Enzymology	Identification, detection, and enumeration of human bifidobacterium species by PCR targeting the transaldolase gene.	Requena T, Burton J, Matsuki T, Munro K, Simon MA, Tanaka R, Watanabe K, Tannock GW.	Appl Environ Microbiol	10.1128/aem.68.5.2420-2427.2002	2002
Metabolism	Adhesion of bifidobacteria to granular starch and its implications in probiotic technologies.	Crittenden R, Laitila A, Forssell P, Matto J, Saarela M, Mattila-Sandholm T, Myllarinen P.	Appl Environ Microbiol	10.1128/aem.67.8.3469-3475.2001	2001
Enzymology	Prophage-like elements in bifidobacteria: insights from genomics, transcription, integration, distribution, and phylogenetic analysis.	Ventura M, Lee JH, Canchaya C, Zink R, Leahy S, Moreno-Munoz JA, O'Connell-Motherway M, Higgins D, Fitzgerald GF, O'Sullivan DJ, van Sinderen D.	Appl Environ Microbiol	10.1128/aem.71.12.8692-8705.2005	2005
Phylogeny	Comparison of 16S rRNA Gene Based Microbial Profiling Using Five Next-Generation Sequencers and Various Primers.	Park C, Kim SB, Choi SH, Kim S	Front Microbiol	10.3389/fmicb.2021.715500	2021
Pathogenicity	Safety Evaluation of Bifidobacterium breve IDCC4401 Isolated from Infant Feces for Use as a Commercial Probiotic.	Choi IY, Kim J, Kim SH, Ban OH, Yang J, Park MK	J Microbiol Biotechnol	10.4014/jmb.2103.03041	2021
Biotechnology	Impact of prebiotics on equol production from soymilk isoflavones by two Bifidobacterium species.	Mustafa SE, Mustafa S, Ismail A, Abas F, Abd Manap MY, Ahmed Hamdi OA, Elzen S, Nahar L, Sarker SD	Heliyon	10.1016/j.heliyon.2020.e05298	2020
	Evaluation of Bifidobacteria and Lactobacillus Probiotics as Alternative Therapy for Salmonella typhimurium Infection in Broiler Chickens.	El-Sharkawy H, Tahoun A, Rizk AM, Suzuki T, Elmonir W, Nassef E, Shukry M, Germoush MO, Farrag F, Bin-Jumah M, Mahmoud AM	Animals (Basel)	10.3390/ani10061023	2020
Metabolism	Linoleic acid induces metabolic stress in the intestinal microorganism Bifidobacterium breve DSM 20213.	Senizza A, Rocchetti G, Callegari ML, Lucini L, Morelli L	Sci Rep	10.1038/s41598-020-62897-w	2020
	Effects of Linoleic Acid on Gut-Derived Bifidobacterium breve DSM 20213: A Transcriptomic Approach.	Senizza A, Callegari ML, Senizza B, Minuti A, Rocchetti G, Morelli L, Patrone V	Microorganisms	10.3390/microorganisms7120710	2019
Enzymology	Highly Selective Production of Compound K from Ginsenoside Rd by Hydrolyzing Glucose at C-3 Glycoside Using beta-Glucosidase of Bifidobacterium breve ATCC 15700.	Zhang R, Huang XM, Yan HJ, Liu XY, Zhou Q, Luo ZY, Tan XN, Zhang BL	J Microbiol Biotechnol	10.4014/jmb.1808.08059	2019
Metabolism	Human milk oligosaccharide consumption by probiotic and human-associated bifidobacteria and lactobacilli.	Thongaram T, Hoeflinger JL, Chow J, Miller MJ	J Dairy Sci	10.3168/jds.2017-12753	2017
Metabolism	Mechanistic Study of Utilization of Water-Insoluble Saccharomyces cerevisiae Glucans by Bifidobacterium breve Strain JCM1192.	Keung HY, Li TK, Sham LT, Cheung MK, Cheung PCK, Kwan HS	Appl Environ Microbiol	10.1128/AEM.03442-16	2017
	Supplementation with Lactobacillus plantarum WCFS1 Prevents Decline of Mucus Barrier in Colon of Accelerated Aging Ercc1(-/Delta7) Mice.	van Beek AA, Sovran B, Hugenholtz F, Meijer B, Hoogerland JA, Mihailova V, van der Ploeg C, Belzer C, Boekschoten MV, Hoeijmakers JH, Vermeij WP, de Vos P, Wells JM, Leenen PJ, Nicoletti C, Hendriks RW, Savelkoul HF	Front Immunol	10.3389/fimmu.2016.00408	2016
Enzymology	In vitro and in vivo evaluation of the prebiotic effect of raw and roasted almonds (Prunus amygdalus).	Liu Z, Wang W, Huang G, Zhang W, Ni L	J Sci Food Agric	10.1002/jsfa.7604	2016
Pathogenicity	Interaction of mouse splenocytes and macrophages with bacterial strains in vitro: the effect of age in the immune response.	Van Beek AA, Hoogerland JA, Belzer C, De Vos P, De Vos WM, Savelkoul HF, Leenen PJ	Benef Microbes	10.3920/BM2015.0094	2015
Genetics	Complete genome sequence of Bifidobacterium breve JCM 1192(T) isolated from infant feces.	Morita H, Toh H, Oshima K, Nakano A, Omori E, Hattori Y, Arakawa K, Suda W, Honda K, Hattori M	J Biotechnol	10.1016/j.jbiotec.2015.06.414	2015
Pathogenicity	RNA of Enterococcus faecalis Strain EC-12 Is a Major Component Inducing Interleukin-12 Production from Human Monocytic Cells.	Nishibayashi R, Inoue R, Harada Y, Watanabe T, Makioka Y, Ushida K	PLoS One	10.1371/journal.pone.0129806	2015
	A Novel Lactobacillus casei LP1 Producing 1,4-Dihydroxy-2-Naphthoic Acid, a Bifidogenic Growth Stimulator.	Kang JE, Kim TJ, Moon GS	Prev Nutr Food Sci	10.3746/pnf.2015.20.1.78	2015
Metabolism	Two beta-galactosidases from the human isolate Bifidobacterium breve DSM 20213: molecular cloning and expression, biochemical characterization and synthesis of galacto-oligosaccharides.	Arreola SL, Intanon M, Suljic J, Kittl R, Pham NH, Kosma P, Haltrich D, Nguyen TH	PLoS One	10.1371/journal.pone.0104056	2014
Phylogeny	Isolation of a bifidogenic peptide from the pepsin hydrolysate of bovine lactoferrin.	Oda H, Wakabayashi H, Yamauchi K, Sato T, Xiao JZ, Abe F, Iwatsuki K	Appl Environ Microbiol	10.1128/AEM.03343-12	2013
Pathogenicity	Identification and accurate quantitation of biological oligosaccharide mixtures.	Strum JS, Kim J, Wu S, De Leoz ML, Peacock K, Grimm R, German JB, Mills DA, Lebrilla CB	Anal Chem	10.1021/ac301128s	2012
Metabolism	Characterization of a Panela cheese with added probiotics and fava bean starch.	Escobar MC, Van Tassell ML, Martinez-Bustos F, Singh M, Castano-Tostado E, Amaya-Llano SL, Miller MJ	J Dairy Sci	10.3168/jds.2011-4655	2012
Metabolism	Physiology of consumption of human milk oligosaccharides by infant gut-associated bifidobacteria.	Asakuma S, Hatakeyama E, Urashima T, Yoshida E, Katayama T, Yamamoto K, Kumagai H, Ashida H, Hirose J, Kitaoka M	J Biol Chem	10.1074/jbc.M111.248138	2011
Pathogenicity	The influence of some probiotic supernatants on the growth and virulence features expression of several selected enteroaggregative E. coli clinical strains.	Lazar V, Miyazaki Y, Hanawa T, Chifiriuc MC, Ditu LM, Marutescu L, Bleotu C, Kamiya S	Roum Arch Microbiol Immunol		2009
Metabolism	In vitro fermentation of arabinoxylan-derived carbohydrates by bifidobacteria and mixed fecal microbiota.	Pastell H, Westermann P, Meyer AS, Tuomainen P, Tenkanen M	J Agric Food Chem	10.1021/jf901397b	2009
Pathogenicity	Synbiotic promotion of epithelial proliferation by orally ingested encapsulated Bifidobacterium breve and raffinose in the small intestine of rats.	Ishizuka S, Iwama A, Dinoto A, Suksomcheep A, Maeta K, Kasai T, Hara H, Yokota A	Mol Nutr Food Res	10.1002/mnfr.200800041	2009
Pathogenicity	Oral administration of Bifidobacterium longum prevents gut-derived Pseudomonas aeruginosa sepsis in mice.	Matsumoto T, Ishikawa H, Tateda K, Yaeshima T, Ishibashi N, Yamaguchi K	J Appl Microbiol	10.1111/j.1365-2672.2007.03593.x	2007
Pathogenicity	Yoghurt fermented by Lactobacillus delbrueckii subsp. bulgaricus H+ -ATPase-defective mutants exhibits enhanced viability of Bifidobacterium breve during storage.	Ongol MP, Sawatari Y, Ebina Y, Sone T, Tanaka M, Tomita F, Yokota A, Asano K	Int J Food Microbiol	10.1016/j.ijfoodmicro.2007.02.019	2007
Pathogenicity	Mechanism of growth inhibition by free bile acids in lactobacilli and bifidobacteria.	Kurdi P, Kawanishi K, Mizutani K, Yokota A	J Bacteriol	10.1128/JB.188.5.1979-1986.2006	2006
Phylogeny	Modulation of rat cecal microbiota by administration of raffinose and encapsulated Bifidobacterium breve.	Dinoto A, Suksomcheep A, Ishizuka S, Kimura H, Hanada S, Kamagata Y, Asano K, Tomita F, Yokota A	Appl Environ Microbiol	10.1128/AEM.72.1.784-792.2006	2006
Metabolism	Growth-promoting effects of lactoferrin on L. acidophilus and Bifidobacterium spp.	Kim WS, Ohashi M, Tanaka T, Kumura H, Kim GY, Kwon IK, Goh JS, Shimazaki K	Biometals	10.1023/b:biom.0000027705.57430.f1	2004
Metabolism	Cholic acid accumulation and its diminution by short-chain fatty acids in bifidobacteria.	Kurdi P, Tanaka H, van Veen HW, Asano K, Tomita F, Yokota A	Microbiology (Reading)	10.1099/mic.0.26376-0	2003
Metabolism	The effect of nisin on the physiology of Bifidobacterium thermophilum.	Kot E, Murad Y, Bezkorovainy A	J Food Prot	10.4315/0362-028x-64.8.1206	2001
Cultivation	Effects of fructooligosaccharides and their monomeric components on bile salt resistance in three species of bifidobacteria.	Perrin S, Grill JP, Schneider F	J Appl Microbiol	10.1046/j.1365-2672.2000.01070.x	2000
Metabolism	Involvement of trihydroxyconjugated bile salts in cholesterol assimilation by bifidobacteria.	Tahri K, Grill JP, Schneider F	Curr Microbiol	10.1007/s002849900148	1997
Pathogenicity	Effect of bifidogenic factors on growth characteristics of bifidobacteria in infant formulas.	Dubey UK, Mistry VV	J Dairy Sci	10.3168/jds.S0022-0302(96)76469-X	1996
Pathogenicity	Growth characteristics of bifidobacteria in infant formulas.	Dubey UK, Mistry VV	J Dairy Sci	10.3168/jds.S0022-0302(96)76468-8	1996
Phylogeny	Five novel bifidobacterial species isolated from faeces of primates in two Czech zoos: Bifidobacterium erythrocebi sp. nov., Bifidobacterium moraviense sp. nov., Bifidobacterium oedipodis sp. nov., Bifidobacterium olomucense sp. nov. and Bifidobacterium panos sp. nov.	Neuzil-Bunesova V, Lugli GA, Modrackova N, Vlkova E, Bolechova P, Burtscher J, Longhi G, Mancabelli L, Killer J, Domig K, Ventura M.	Int J Syst Evol Microbiol	10.1099/ijsem.0.004573	2021
Phylogeny	Bifidobacterium callitrichidarum sp. nov. from the faeces of the emperor tamarin (Saguinus imperator).	Modesto M, Michelini S, Sansosti MC, De Filippo C, Cavalieri D, Qvirist L, Andlid T, Spiezio C, Sandri C, Pascarelli S, Sgorbati B, Mattarelli P	Int J Syst Evol Microbiol	10.1099/ijsem.0.002472	2017

References

#8482	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20213
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#42088	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#117003	Collection of Institut Pasteur ; Curators of the CIP; CIP 64.69
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bifidobacterium breve (DSM 20213, ATCC 15700, NCTC 11815)

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