Bifidobacterium breve (JCM 7019)

Name: Bifidobacterium breve (JCM 7019)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 165455

Type strain

Culture col. no. JCM 7019

NCBI tax ID(s) 1385940 1685

Special Collections JCM

History Y. Benno <-- T. Mitsuoka IV-19 (30010 I-53-8).

Links

Bifidobacterium breve JCM 7019 is a mesophilic prokaryote that was isolated from Infant feces.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 64957

JCM 7019

@ref 20215

Last LPSN update 2025-12-16 10:09:40

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Bifidobacteriales

Family Bifidobacteriaceae

Genus Bifidobacterium

Species Bifidobacterium breve

Full scientific name Bifidobacterium breve Reuter 1963 (Approved Lists 1980)

BacDive ID	Other strains from **Bifidobacterium breve** (35)	Type strain
1695	B. breve S1, DSM 20213, ATCC 15700, NCTC 11815, JCM ... (type strain)
1696	B. breve S50 (Variant a), S50, DSM 20091, ATCC 15698, ...
134790	B. breve 17c, CIP 64.68, ATCC 15699, CCUG 45221
137497	B. breve S46, CIP 64.70, ATCC 15701, JCM 7016, BCRC ...
138672	B. breve 755-84, CIP 101158
141735	B. breve CCUG 5862, NCTC 10471
143052	B. breve CCUG 16568
143053	B. breve CCUG 16569
144929	B. breve CCUG 27171 A
146282	B. breve CCUG 30785
146947	B. breve CCUG 32526 B
147417	B. breve CCUG 33558
147864	B. breve CCUG 34405
148335	B. breve CCUG 35244
148336	B. breve CCUG 35245
150885	B. breve CCUG 42620
150897	B. breve CCUG 42657
151165	B. breve CCUG 43395 A
151166	B. breve CCUG 43395 B
151681	B. breve CCUG 44623
152514	B. breve CCUG 46983
152771	B. breve CCUG 47591
152812	B. breve CCUG 47672
152865	B. breve CCUG 47820
152875	B. breve CCUG 47844
153826	B. breve CCUG 51291
154347	B. breve CCUG 53196
154385	B. breve CCUG 53338
154927	B. breve CCUG 55738
154963	B. breve CCUG 55883
155699	B. breve CCUG 59045
155780	B. breve CCUG 59290
165454	B. breve JCM 7017
165456	B. breve JCM 7020
176408	B. breve HUN447, RP2, DSM 118819

Morphology

Cell morphology

@ref	Motility	Confidence
125438		92

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	37	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		96

Isolation, sampling and environmental information

Isolation

67770

Sample typeInfant feces

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM56901v1 assembly for Bifidobacterium breve JCM 7019	complete	GCA_000569015	1385940.3	2588253744	1385940	97.41
66792	Bifidobacterium breve JCM 7019	complete			2513237173	1385940	93.73

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
124043	Bifidobacterium breve gene for 16S rRNA, partial sequence, strain: JCM 7019.	AB116292	479	1685
124043	Bifidobacterium breve gene for 16S rRNA, partial sequence, strain: JCM 7019.	AB507088	452	1685
124043	Bifidobacterium breve strain JCM 7019 16S ribosomal RNA gene, partial sequence.	AF491836	1453	1685
124043	Bifidobacterium breve JCM 7019 gene for 16S rRNA, partial sequence.	LC638736	1406	1685

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bifidobacterium breve JCM 7019
PATRIC: 1385940.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.00	no
125439	motility	BacteriaNetⓘ	no	70.30	no
125439	gram_stain	BacteriaNetⓘ	positive	69.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	66.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bifidobacterium breve JCM 7019 JCM 7019
NCBI: GCA_000569015.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	86.96	no
125438	anaerobic	anaerobicⓘ	yes	83.83	no
125438	aerobic	aerobicⓘ	no	92.60	no
125438	spore-forming	spore-formingⓘ	no	85.86	no
125438	thermophilic	thermophileⓘ	no	92.49	yes
125438	flagellated	motile2+ⓘ	no	92.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genomic and ecological approaches to identify the Bifidobacterium breve prototype of the healthy human gut microbiota.	Argentini C, Lugli GA, Tarracchini C, Fontana F, Mancabelli L, Viappiani A, Anzalone R, Angelini L, Alessandri G, Longhi G, Bianchi MG, Taurino G, Bussolati O, Milani C, van Sinderen D, Turroni F, Ventura M.	Front Microbiol	10.3389/fmicb.2024.1349391	2024
Genetics	MEGAnnotator2: a pipeline for the assembly and annotation of microbial genomes.	Lugli GA, Fontana F, Tarracchini C, Milani C, Mancabelli L, Turroni F, Ventura M.	Microbiome Res Rep	10.20517/mrr.2022.21	2023
	In vitro competition with Bifidobacterium strains impairs potentially pathogenic growth of Clostridium perfringens on 2'-fucosyllactose.	Nakajima A, Arzamasov AA, Sakanaka M, Murakami R, Kozakai T, Yoshida K, Katoh T, Ojima MN, Hirose J, Nagao S, Xiao JZ, Odamaki T, Rodionov DA, Katayama T.	Gut Microbes	10.1080/19490976.2025.2478306	2025
	Bifidobacterial biofilm formation is a multifactorial adaptive phenomenon in response to bile exposure.	Kelly SM, Lanigan N, O'Neill IJ, Bottacini F, Lugli GA, Viappiani A, Turroni F, Ventura M, van Sinderen D.	Sci Rep	10.1038/s41598-020-68179-9	2020
	Cross-feeding of bifidobacteria promotes intestinal homeostasis: a lifelong perspective on the host health.	Xiao M, Zhang C, Duan H, Narbad A, Zhao J, Chen W, Zhai Q, Yu L, Tian F.	NPJ Biofilms Microbiomes	10.1038/s41522-024-00524-6	2024
Genetics	Comparative genomics of the Bifidobacterium breve taxon.	Bottacini F, O'Connell Motherway M, Kuczynski J, O'Connell KJ, Serafini F, Duranti S, Milani C, Turroni F, Lugli GA, Zomer A, Zhurina D, Riedel C, Ventura M, van Sinderen D.	BMC Genomics	10.1186/1471-2164-15-170	2014
	Discovery of a conjugative megaplasmid in Bifidobacterium breve.	Bottacini F, O'Connell Motherway M, Casey E, McDonnell B, Mahony J, Ventura M, van Sinderen D.	Appl Environ Microbiol	10.1128/aem.02871-14	2015
Enzymology	Bifidobacteria isolated from vaginal and gut microbiomes are indistinguishable by comparative genomics.	Freitas AC, Hill JE.	PLoS One	10.1371/journal.pone.0196290	2018
	How microbial glycosyl hydrolase activity in the gut mucosa initiates microbial cross-feeding.	Berkhout MD, Plugge CM, Belzer C.	Glycobiology	10.1093/glycob/cwab105	2022
Metabolism	Variation in consumption of human milk oligosaccharides by infant gut-associated strains of Bifidobacterium breve.	Ruiz-Moyano S, Totten SM, Garrido DA, Smilowitz JT, German JB, Lebrilla CB, Mills DA.	Appl Environ Microbiol	10.1128/aem.01843-13	2013
	Characterization of GH2 and GH42 beta-galactosidases derived from bifidobacterial infant isolates.	Ambrogi V, Bottacini F, O'Sullivan J, O'Connell Motherway M, Linqiu C, Schoemaker B, Schoterman M, van Sinderen D.	AMB Express	10.1186/s13568-019-0735-3	2019
Metabolism	Metabolism of four alpha-glycosidic linkage-containing oligosaccharides by Bifidobacterium breve UCC2003.	O'Connell KJ, O'Connell Motherway M, O'Callaghan J, Fitzgerald GF, Ross RP, Ventura M, Stanton C, van Sinderen D.	Appl Environ Microbiol	10.1128/aem.01775-13	2013
Metabolism	Screening for and identification of starch-, amylopectin-, and pullulan-degrading activities in bifidobacterial strains.	Ryan SM, Fitzgerald GF, van Sinderen D.	Appl Environ Microbiol	10.1128/aem.00257-06	2006
Metabolism	Metabolism of a plant derived galactose-containing polysaccharide by Bifidobacterium breve UCC2003.	O'Connell Motherway M, Fitzgerald GF, van Sinderen D.	Microb Biotechnol	10.1111/j.1751-7915.2010.00218.x	2011
Enzymology	Modulation of rat cecal microbiota by administration of raffinose and encapsulated Bifidobacterium breve.	Dinoto A, Suksomcheep A, Ishizuka S, Kimura H, Hanada S, Kamagata Y, Asano K, Tomita F, Yokota A.	Appl Environ Microbiol	10.1128/aem.72.1.784-792.2006	2006
Metabolism	Diversity, ecology and intestinal function of bifidobacteria.	Bottacini F, Ventura M, van Sinderen D, O'Connell Motherway M.	Microb Cell Fact	10.1186/1475-2859-13-s1-s4	2014
Enzymology	Overcoming the restriction barrier to plasmid transformation and targeted mutagenesis in Bifidobacterium breve UCC2003.	O'Connell Motherway M, O'Driscoll J, Fitzgerald GF, Van Sinderen D.	Microb Biotechnol	10.1111/j.1751-7915.2008.00071.x	2009
Enzymology	Prophage-like elements in bifidobacteria: insights from genomics, transcription, integration, distribution, and phylogenetic analysis.	Ventura M, Lee JH, Canchaya C, Zink R, Leahy S, Moreno-Munoz JA, O'Connell-Motherway M, Higgins D, Fitzgerald GF, O'Sullivan DJ, van Sinderen D.	Appl Environ Microbiol	10.1128/aem.71.12.8692-8705.2005	2005
Phylogeny	Extraction of the same novel homoglycan mixture from two different strains of Bifidobacterium animalis and three strains of Bifidobacterium breve.	Alhudhud M, Sadiq S, Ngo HN, Hidalgo-Cantabrana C, Ruas-Madiedo P, van Sinderen D, Humphreys PN, Laws AP	Benef Microbes	10.3920/BM2017.0145	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bifidobacterium breve (JCM 7019)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000569015

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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