Strain identifier
BacDive ID: 165454
Type strain: 
Species: Bifidobacterium breve
Strain history: Y. Benno <-- T. Mitsuoka IV-17 (30019 N32-701).
NCBI tax ID(s): 1385939 (strain), 1685 (species)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 165454
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Bifidobacterium breve JCM 7017 is a mesophilic bacterium that was isolated from Human feces.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1385939 | strain |
| 1685 | species |
strain history
- @ref: 67770
- history: Y. Benno <-- T. Mitsuoka IV-17 (30019 N32-701).
doi: 10.13145/bacdive165454.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Bifidobacteriales
- family: Bifidobacteriaceae
- genus: Bifidobacterium
- species: Bifidobacterium breve
- full scientific name: Bifidobacterium breve Reuter 1963 (Approved Lists 1980)
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Bifidobacteriales
family: Bifidobacteriaceae
genus: Bifidobacterium
species: Bifidobacterium breve
full scientific name: Bifidobacterium breve Reuter 1963
type strain: no
Morphology
cell morphology
- @ref: 125438
- motility: no
- confidence: 90
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
spore formation
- @ref: 125439
- spore formation: no
- confidence: 97.1
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Human feces
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 124043 | Bifidobacterium breve gene for 16S rRNA, partial sequence, strain: JCM 7017. | AB116291 | 480 | nuccore | 1685 |
| 124043 | Bifidobacterium breve gene for 16S rRNA, partial sequence, strain: JCM 7017. | AB507087 | 664 | nuccore | 1685 |
| 124043 | Bifidobacterium breve strain JCM 7017 16S ribosomal RNA gene, partial sequence. | AF491835 | 1454 | nuccore | 1685 |
| 124043 | Bifidobacterium breve JCM 7017 gene for 16S rRNA, partial sequence. | LC638735 | 1466 | nuccore | 1685 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bifidobacterium breve JCM 7017 | GCA_000568975 | complete | ncbi | 1385939 |
| 66792 | Bifidobacterium breve JCM 7017 | 1385939.3 | complete | patric | 1385939 |
| 66792 | Bifidobacterium breve JCM 7017 | 2565956584 | complete | img | 1385939 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 87.922 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 83.494 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 92.051 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.266 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 91.987 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 90 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 97.1 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 53.5 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 59 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 78.3 |
External links
@ref: 67770
culture collection no.: JCM 7017
straininfo link
- @ref: 114475
- straininfo: 64956
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Pathogenicity | 17434219 | Yoghurt fermented by Lactobacillus delbrueckii subsp. bulgaricus H+ -ATPase-defective mutants exhibits enhanced viability of Bifidobacterium breve during storage. | Ongol MP, Sawatari Y, Ebina Y, Sone T, Tanaka M, Tomita F, Yokota A, Asano K | Int J Food Microbiol | 10.1016/j.ijfoodmicro.2007.02.019 | 2007 | Bifidobacterium/*growth & development, Colony Count, Microbial, Fermentation, Food Handling/*methods, Food Preservation/*methods, Humans, Hydrogen-Ion Concentration, Lactobacillus delbrueckii/genetics/*physiology, Mutation, Proton-Translocating ATPases/*deficiency/genetics, Temperature, Time Factors, Yogurt/*microbiology | |
| Metabolism | 21261927 | Overcoming the restriction barrier to plasmid transformation and targeted mutagenesis in Bifidobacterium breve UCC2003. | O'Connell Motherway M, O'Driscoll J, Fitzgerald GF, Van Sinderen D | Microb Biotechnol | 10.1111/j.1751-7915.2008.00071.x | 2008 | Amino Acid Sequence, Bacterial Proteins/chemistry/*genetics/metabolism, Bifidobacterium/chemistry/*enzymology/*genetics, DNA Restriction Enzymes/chemistry/*genetics/metabolism, Molecular Sequence Data, *Mutagenesis, Plasmids/*genetics, Sequence Alignment, *Transformation, Bacterial | Enzymology |
| Genetics | 25326305 | Discovery of a conjugative megaplasmid in Bifidobacterium breve. | Bottacini F, O'Connell Motherway M, Casey E, McDonnell B, Mahony J, Ventura M, van Sinderen D | Appl Environ Microbiol | 10.1128/AEM.02871-14 | 2014 | Bifidobacterium/*genetics, CRISPR-Cas Systems, Conjugation, Genetic, DNA, Bacterial/chemistry/genetics, Genes, Bacterial, Molecular Sequence Data, *Plasmids, Sequence Analysis, DNA | Transcriptome |
| Phylogeny | 29695179 | Extraction of the same novel homoglycan mixture from two different strains of Bifidobacterium animalis and three strains of Bifidobacterium breve. | Alhudhud M, Sadiq S, Ngo HN, Hidalgo-Cantabrana C, Ruas-Madiedo P, van Sinderen D, Humphreys PN, Laws AP | Benef Microbes | 10.3920/BM2017.0145 | 2018 | Alkalies/chemistry, Bifidobacterium animalis/*chemistry/classification, Bifidobacterium breve/*chemistry/classification, Glucose, Glycogen/isolation & purification, Polysaccharides/*analysis | Enzymology |
| 33939264 | Molecular analysis of the replication functions of the bifidobacterial conjugative megaplasmid pMP7017. | Dineen RL, Penno C, Kelleher P, Bourin MJB, O'Connell-Motherway M, van Sinderen D | Microb Biotechnol | 10.1111/1751-7915.13810 | 2021 | *Bifidobacterium/genetics, *Escherichia coli/genetics, Genetic Vectors, Plasmids/genetics | ||
| 34220742 | Bifidobacterium breve Exopolysaccharide Blocks Dendritic Cell Maturation and Activation of CD4(+) T Cells. | Hickey A, Stamou P, Udayan S, Ramon-Vazquez A, Esteban-Torres M, Bottacini F, Woznicki JA, Hughes O, Melgar S, Ventura M, Van Sinderen D, Rossini V, Nally K | Front Microbiol | 10.3389/fmicb.2021.653587 | 2021 |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 114475 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID64956.1 |
| 124043 | Isabel Schober, Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |