Strain identifier
BacDive ID: 165454
Type strain: 
Species: Bifidobacterium breve
Strain history: Y. Benno <-- T. Mitsuoka IV-17 (30019 N32-701).
NCBI tax ID(s): 1385939 (strain), 1685 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 165454
keywords: genome sequence, Bacteria, anaerobe, mesophilic, Gram-positive
description: Bifidobacterium breve JCM 7017 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from Human feces.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1685 | species |
| 1385939 | strain |
strain history
- @ref: 67770
- history: Y. Benno <-- T. Mitsuoka IV-17 (30019 N32-701).
doi: 10.13145/bacdive165454.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Bifidobacteriales
- family: Bifidobacteriaceae
- genus: Bifidobacterium
- species: Bifidobacterium breve
- full scientific name: Bifidobacterium breve Reuter 1963 (Approved Lists 1980)
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Bifidobacteriales
family: Bifidobacteriaceae
genus: Bifidobacterium
species: Bifidobacterium breve
full scientific name: Bifidobacterium breve Reuter 1963
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: anaerobe
- confidence: 99.744
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.984 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Human feces
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bifidobacterium breve JCM 7017 | GCA_000568975 | complete | ncbi | 1385939 |
| 66792 | Bifidobacterium breve JCM 7017 | 1385939.3 | complete | patric | 1385939 |
| 66792 | Bifidobacterium breve JCM 7017 | 2565956584 | complete | img | 1385939 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 94.14 | no |
| flagellated | no | 97.274 | no |
| gram-positive | yes | 94.188 | no |
| anaerobic | yes | 97.801 | no |
| halophile | no | 73.103 | no |
| spore-forming | no | 95.657 | no |
| thermophile | no | 95.886 | yes |
| glucose-util | yes | 87.119 | no |
| aerobic | no | 97.022 | no |
| glucose-ferment | yes | 88.817 | no |
External links
@ref: 67770
culture collection no.: JCM 7017
straininfo link
- @ref: 114475
- straininfo: 64956
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Pathogenicity | 17434219 | Yoghurt fermented by Lactobacillus delbrueckii subsp. bulgaricus H+ -ATPase-defective mutants exhibits enhanced viability of Bifidobacterium breve during storage. | Ongol MP, Sawatari Y, Ebina Y, Sone T, Tanaka M, Tomita F, Yokota A, Asano K | Int J Food Microbiol | 10.1016/j.ijfoodmicro.2007.02.019 | 2007 | Bifidobacterium/*growth & development, Colony Count, Microbial, Fermentation, Food Handling/*methods, Food Preservation/*methods, Humans, Hydrogen-Ion Concentration, Lactobacillus delbrueckii/genetics/*physiology, Mutation, Proton-Translocating ATPases/*deficiency/genetics, Temperature, Time Factors, Yogurt/*microbiology | |
| Metabolism | 21261927 | Overcoming the restriction barrier to plasmid transformation and targeted mutagenesis in Bifidobacterium breve UCC2003. | O'Connell Motherway M, O'Driscoll J, Fitzgerald GF, Van Sinderen D | Microb Biotechnol | 10.1111/j.1751-7915.2008.00071.x | 2008 | Amino Acid Sequence, Bacterial Proteins/chemistry/*genetics/metabolism, Bifidobacterium/chemistry/*enzymology/*genetics, DNA Restriction Enzymes/chemistry/*genetics/metabolism, Molecular Sequence Data, *Mutagenesis, Plasmids/*genetics, Sequence Alignment, *Transformation, Bacterial | Enzymology |
| Genetics | 25326305 | Discovery of a conjugative megaplasmid in Bifidobacterium breve. | Bottacini F, O'Connell Motherway M, Casey E, McDonnell B, Mahony J, Ventura M, van Sinderen D | Appl Environ Microbiol | 10.1128/AEM.02871-14 | 2014 | Bifidobacterium/*genetics, CRISPR-Cas Systems, Conjugation, Genetic, DNA, Bacterial/chemistry/genetics, Genes, Bacterial, Molecular Sequence Data, *Plasmids, Sequence Analysis, DNA | Transcriptome |
| Phylogeny | 29695179 | Extraction of the same novel homoglycan mixture from two different strains of Bifidobacterium animalis and three strains of Bifidobacterium breve. | Alhudhud M, Sadiq S, Ngo HN, Hidalgo-Cantabrana C, Ruas-Madiedo P, van Sinderen D, Humphreys PN, Laws AP | Benef Microbes | 10.3920/BM2017.0145 | 2018 | Alkalies/chemistry, Bifidobacterium animalis/*chemistry/classification, Bifidobacterium breve/*chemistry/classification, Glucose, Glycogen/isolation & purification, Polysaccharides/*analysis | Enzymology |
| 33939264 | Molecular analysis of the replication functions of the bifidobacterial conjugative megaplasmid pMP7017. | Dineen RL, Penno C, Kelleher P, Bourin MJB, O'Connell-Motherway M, van Sinderen D | Microb Biotechnol | 10.1111/1751-7915.13810 | 2021 | *Bifidobacterium/genetics, *Escherichia coli/genetics, Genetic Vectors, Plasmids/genetics | ||
| 34220742 | Bifidobacterium breve Exopolysaccharide Blocks Dendritic Cell Maturation and Activation of CD4(+) T Cells. | Hickey A, Stamou P, Udayan S, Ramon-Vazquez A, Esteban-Torres M, Bottacini F, Woznicki JA, Hughes O, Melgar S, Ventura M, Van Sinderen D, Rossini V, Nally K | Front Microbiol | 10.3389/fmicb.2021.653587 | 2021 |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |
| 114475 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID64956.1 |