Aggregatibacter actinomycetemcomitans JCM 30399 is a bacterium that was isolated from Periodontal pocket.
genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Pasteurellales |
| Family Pasteurellaceae |
| Genus Aggregatibacter |
| Species Aggregatibacter actinomycetemcomitans |
| Full scientific name Aggregatibacter actinomycetemcomitans (Klinger 1912) Nørskov-Lauritsen and Kilian 2006 |
| Synonyms (3) |
| @ref | Growth | Type | Temperature (°C) | |
|---|---|---|---|---|
| 67770 | positive | growth | 37 |
| 67770 | Sample typePeriodontal pocket |
Global distribution of 16S sequence AB512007 (>99% sequence identity) for Aggregatibacter actinomycetemcomitans subclade from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 124043 | ASM154777v1 assembly for Aggregatibacter actinomycetemcomitans NUM4039 NUM 4039 | complete | 1407647 | 71.44 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 67770 | Aggregatibacter actinomycetemcomitans gene for 16S ribosomal RNA, partial sequence, strain: NUM4039 | AB512007 | 1508 | 714 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 95.80 | no |
| 125439 | motility | BacteriaNetⓘ | no | 68.20 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 91.60 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | facultative aerobe | 74.80 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 97.58 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 94.15 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 92.60 | no |
| 125438 | aerobic | aerobicⓘ | no | 85.98 | no |
| 125438 | thermophilic | thermophileⓘ | no | 97.50 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 89.99 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Complete Genome Sequence of Aggregatibacter actinomycetemcomitans Serotype g Strain NUM4039 (JCM 30399). | Saito M, Hirasawa M, Kuwahara N, Okada T, Umezawa K, Kobayashi T, Okamoto M, Naito M, Hirasawa M, Takada K | Genome Announc | 10.1128/genomeA.00158-16 | 2016 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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If you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive163782.20251217.10
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BacDive in 2025: the core database for prokaryotic strain data