Aggregatibacter actinomycetemcomitans (CIP 52.105, NCTC 9709, CCUG 3711)

Name: Aggregatibacter actinomycetemcomitans (CIP 52.105, NCTC 9709, CCUG 3711)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 137793

Type strain

Strain Designation 120/48-49

Culture col. no. CIP 52.105 NCTC 9709 CCUG 3711 120/48-49

NCBI tax ID(s) 714

Special Collections CCUG CIP

History CIP <- 1955, P. Holm, Stat. Ser. Copenhagen, Denmark: strain 120/48-49

Links

Aggregatibacter actinomycetemcomitans 120/48-49 is a bacterium that was isolated from Abscess.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 51074

CCUG 3711,NCTC 9709,CIP 52.105

@ref 20215

Last LPSN update 2026-02-09 11:32:58

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pasteurellales

Family Pasteurellaceae

Genus Aggregatibacter

Species Aggregatibacter actinomycetemcomitans

Full scientific name Aggregatibacter actinomycetemcomitans (Klinger 1912) Nørskov-Lauritsen and Kilian 2006

Synonyms (3)

"Bacterium actinomycetemcomitans"
Actinobacillus actinomycetemcomitans
Haemophilus actinomycetemcomitans

BacDive ID	Other strains from **Aggregatibacter actinomycetemcomitans** (79)	Type strain
11752	A. actinomycetemcomitans 277/49-50(8), DSM 8324, ATCC 33384, CCUG ... (type strain)
11753	A. actinomycetemcomitans DSM 11122, ATCC 29524, NCTC 10982, CDC B5386, ...
11754	A. actinomycetemcomitans Y4, DSM 11123, ATCC 43718, JCM 8578
134882	A. actinomycetemcomitans 663-86, CIP 102682
134903	A. actinomycetemcomitans 711-86, CIP 102729
134913	A. actinomycetemcomitans 736-86, CIP 102748
134997	A. actinomycetemcomitans 82-87, CIP 102839
135028	A. actinomycetemcomitans 167-87, CIP 102906
135633	A. actinomycetemcomitans 4898, CIP 63.30
136040	A. actinomycetemcomitans CIP 52.108
136086	A. actinomycetemcomitans 373-86, CIP 102383
136093	A. actinomycetemcomitans 447-86, CIP 102443
136133	A. actinomycetemcomitans 760-86, CIP 102736
136134	A. actinomycetemcomitans 759-86, CIP 102746
136895	A. actinomycetemcomitans CIP 55.61
137048	A. actinomycetemcomitans 641-86, CIP 102641
137210	A. actinomycetemcomitans 241/50-1, CIP 52.107
137342	A. actinomycetemcomitans 159-87, CIP 102887
137823	A. actinomycetemcomitans B5279, CIP 101032, ATCC 29522, NCTC 10979, ...
137824	A. actinomycetemcomitans A1916, CIP 101033, ATCC 29523, JCM 12985, ...
137850	A. actinomycetemcomitans 457-85, 31054, CIP 101673
137869	A. actinomycetemcomitans NIBBI 7934, 955-85, CIP 102003
137882	A. actinomycetemcomitans CIP 52.109
137897	A. actinomycetemcomitans 63.86, CIP 102138
137967	A. actinomycetemcomitans 279-86, CIP 102329
137995	A. actinomycetemcomitans 430-86, CIP 102432
137999	A. actinomycetemcomitans 440-86, CIP 102437
138063	A. actinomycetemcomitans 622-86, CIP 102628
138592	A. actinomycetemcomitans CIP 101478
138701	A. actinomycetemcomitans 163.86, CIP 102207
138937	A. actinomycetemcomitans Kyritsopoulos, CIP 68.43
139434	A. actinomycetemcomitans 739.84, CIP 101107
139675	A. actinomycetemcomitans 283-86, CIP 102323
141371	A. actinomycetemcomitans CCUG 1210
142454	A. actinomycetemcomitans CCUG 12604
144398	A. actinomycetemcomitans CCUG 24857
144399	A. actinomycetemcomitans CCUG 24858
144400	A. actinomycetemcomitans CCUG 24859
144864	A. actinomycetemcomitans CCUG 26903
145665	A. actinomycetemcomitans CCUG 29180
145828	A. actinomycetemcomitans CCUG 29730
145848	A. actinomycetemcomitans CCUG 29772
145978	A. actinomycetemcomitans CCUG 30070
146232	A. actinomycetemcomitans CCUG 30676
146235	A. actinomycetemcomitans CCUG 30681
146759	A. actinomycetemcomitans CCUG 32074
147962	A. actinomycetemcomitans CCUG 34586
148215	A. actinomycetemcomitans CCUG 35054
148720	A. actinomycetemcomitans CCUG 35851
148741	A. actinomycetemcomitans CCUG 35886
148975	A. actinomycetemcomitans CCUG 36666
149178	A. actinomycetemcomitans CCUG 37000
149279	A. actinomycetemcomitans CCUG 37399
149285	A. actinomycetemcomitans CCUG 37418
149857	A. actinomycetemcomitans CCUG 38565
149865	A. actinomycetemcomitans CCUG 38577
150647	A. actinomycetemcomitans CCUG 41853
150659	A. actinomycetemcomitans CCUG 41889
151099	A. actinomycetemcomitans CCUG 43274
151113	A. actinomycetemcomitans CCUG 43298
151795	A. actinomycetemcomitans CCUG 44891
152004	A. actinomycetemcomitans CCUG 45503
152464	A. actinomycetemcomitans CCUG 46863
153109	A. actinomycetemcomitans CCUG 48512
153410	A. actinomycetemcomitans CCUG 49496
153923	A. actinomycetemcomitans CCUG 51667
153924	A. actinomycetemcomitans CCUG 51668
153925	A. actinomycetemcomitans CCUG 51669
153926	A. actinomycetemcomitans CCUG 51670
153927	A. actinomycetemcomitans CCUG 51671
153928	A. actinomycetemcomitans CCUG 51672
153929	A. actinomycetemcomitans CCUG 51673
155035	A. actinomycetemcomitans CCUG 56172
155036	A. actinomycetemcomitans CCUG 56173
155609	A. actinomycetemcomitans CCUG 58363
156322	A. actinomycetemcomitans CCUG 61155
163782	A. actinomycetemcomitans JCM 30399
165825	A. actinomycetemcomitans JCM 8577, ATCC 43719
165826	A. actinomycetemcomitans JCM 8579, ATCC 43717

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	97.9
125438		90.75
125438	negative	97.082

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
38732	MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and Neisseria		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);PolyVitex mischung (10.000 ml)
38732	CIP Medium 10			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
38732	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	94.1

Spore formation

@ref	Spore formation	Confidence
125439		96.6
125438		92.106

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68377	15824 ChEBI	D-fructose	+	builds acid from	from API NH
68377	17634 ChEBI	D-glucose	+	builds acid from	from API NH
68377	17306 ChEBI	maltose	-	builds acid from	from API NH
68377	18257 ChEBI	ornithine	-	degradation	from API NH
68377	17992 ChEBI	sucrose	-	builds acid from	from API NH
68377	27897 ChEBI	tryptophan	-	energy source	from API NH
68377	16199 ChEBI	urea	-	hydrolysis	from API NH

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68377	35581 ChEBI	indole		from API NH

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68377	35581 ChEBI	indole	-	from API NH

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68377	alkaline phosphatase	+	3.1.3.1	from API NH
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68377	beta-galactosidase	-	3.2.1.23	from API NH
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68377	beta-lactamase	-	3.5.2.6	from API NH
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68377	gamma-glutamyltransferase	+	2.3.2.2	from API NH
68382	leucine arylamidase	+	3.4.11.1	from API zym
68377	lipase	-		from API NH
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
68377	ornithine decarboxylase	-	4.1.1.17	from API NH
68377	proline-arylamidase	-	3.4.11.5	from API NH
68382	trypsin	-	3.4.21.4	from API zym
68377	tryptophan deaminase	-	4.1.99.1	from API NH
68377	urease	-	3.5.1.5	from API NH
68382	valine arylamidase	-		from API zym

Fatty acid profile

Metadata FA analysis

@ref

44681

Fatty acid	Percentage	ECL
C16:1 ω7c	38.5	15.819
C14:0	25.6	14
C16:0	24.9	16
C14:0 3OH/C16:1 ISO I	11	15.485

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
44681	-	+	-	-	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-

API NH

@ref	PEN	GLU	FRU	MAL	SAC	ODC	URE	LIP	PAL	beta GAL	ProA	GGT	IND
44681	-	+	+	-	-	-	-	-	+	-	-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Other	#Abscess

Isolation

@ref	Sample type	Sampling date	Isolation date
44681	Abscess	1948
38732	Human, Abscess in lumbar region		1948

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
38732	2	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	55433_A01 assembly for Aggregatibacter actinomycetemcomitans NCTC9709	contig	GCA_900445165	714.290	2871044631	714	77.56

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Aggregatibacter actinomycetemcomitans NCTC9709
NCBI: GCA_900445165

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.60	no
125439	motility	BacteriaNetⓘ	no	58.10	no
125439	gram_stain	BacteriaNetⓘ	negative	97.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Aggregatibacter actinomycetemcomitans strain NCTC9709
PATRIC: 714.290

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.08	no
125438	anaerobic	anaerobicⓘ	no	94.19	no
125438	spore-forming	spore-formingⓘ	no	92.11	no
125438	aerobic	aerobicⓘ	no	85.85	no
125438	thermophilic	thermophileⓘ	no	97.50	yes
125438	flagellated	motile2+ⓘ	no	90.75	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Quantitative discrimination of Aggregatibacter actinomycetemcomitans highly leukotoxic JP2 clone from non-JP2 clones in diagnosis of aggressive periodontitis.	Yoshida A, Ennibi OK, Miyazaki H, Hoshino T, Hayashida H, Nishihara T, Awano S, Ansai T.	BMC Infect Dis	10.1186/1471-2334-12-253	2012
Phylogeny	Identification of Actinobacillus actinomycetemcomitans serotypes by multiplex PCR.	Suzuki N, Nakano Y, Yoshida Y, Ikeda D, Koga T.	J Clin Microbiol	10.1128/jcm.39.5.2002-2005.2001	2001
Pathogenicity	Bactericidal activities of synthetic human leukocyte cathepsin G-derived antibiotic peptides and congeners against Actinobacillus actinomycetemcomitans and Capnocytophaga sputigena.	Miyasaki KT, Bodeau AL, Pohl J, Shafer WM.	Antimicrob Agents Chemother	10.1128/aac.37.12.2710	1993

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#38732	Collection of Institut Pasteur ; Curators of the CIP; CIP 52.105
#44681	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 3711
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68377	Automatically annotated from API NH .
#68382	Automatically annotated from API zym .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Aggregatibacter actinomycetemcomitans (CIP 52.105, NCTC 9709, CCUG 3711)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Fatty acid profile

API zym

API NH

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900445165

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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