Strain identifier

BacDive ID: 137793

Type strain: No

Species: Aggregatibacter actinomycetemcomitans

Strain Designation: 120/48-49

Strain history: CIP <- 1955, P. Holm, Stat. Ser. Copenhagen, Denmark: strain 120/48-49

NCBI tax ID(s): 714 (species)

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General

@ref: 38732

BacDive-ID: 137793

keywords: genome sequence, Bacteria, mesophilic, Gram-negative

description: Aggregatibacter actinomycetemcomitans 120/48-49 is a mesophilic, Gram-negative bacterium that was isolated from Abscess.

NCBI tax id

  • NCBI tax id: 714
  • Matching level: species

strain history

  • @ref: 38732
  • history: CIP <- 1955, P. Holm, Stat. Ser. Copenhagen, Denmark: strain 120/48-49

doi: 10.13145/bacdive137793.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Aggregatibacter
  • species: Aggregatibacter actinomycetemcomitans
  • full scientific name: Aggregatibacter actinomycetemcomitans (Klinger 1912) Nørskov-Lauritsen and Kilian 2006

  • synonyms

    @refsynonym
    20215Bacterium actinomycetemcomitans
    20215Haemophilus actinomycetemcomitans
    20215Actinobacillus actinomycetemcomitans

@ref: 38732

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Aggregatibacter

species: Aggregatibacter actinomycetemcomitans

strain designation: 120/48-49

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.929

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
38732MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and NeisseriayesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);PolyVitex mischung (10.000 ml)
38732CIP Medium 10yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=10

culture temp

  • @ref: 38732
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.991

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837717634D-glucose+builds acid from
6837715824D-fructose+builds acid from
6837717306maltose-builds acid from
6837717992sucrose-builds acid from
6837718257ornithine-degradation
6837716199urea-hydrolysis
6837727897tryptophan-energy source

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase+2.3.2.2
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase-3.2.1.23
68377alkaline phosphatase+3.1.3.1
68377lipase-
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17
68377beta-lactamase-3.5.2.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    44681C14:025.614
    44681C16:024.916
    44681C14:0 3OH/C16:1 ISO I1115.485
    44681C16:1 ω7c38.515.819
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
44681-+---+----+---------

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
44681-++-----+--+-

Isolation, sampling and environmental information

isolation

@refsample typesampling dateisolation date
44681Abscess1948
38732Human, Abscess in lumbar region1948

isolation source categories

  • Cat1: #Host Body-Site
  • Cat2: #Other
  • Cat3: #Abscess

Safety information

risk assessment

  • @ref: 38732
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aggregatibacter actinomycetemcomitans NCTC9709GCA_900445165contigncbi714
66792Aggregatibacter actinomycetemcomitans strain NCTC9709714.290wgspatric714
66792Aggregatibacter actinomycetemcomitans NCTC 97092871044631draftimg714

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.534no
anaerobicno93.602no
halophileno50.596no
spore-formingno98.591no
glucose-utilno56.552no
thermophileno96.071no
flagellatedno96.489no
aerobicno96.465no
motileno90.686no
glucose-fermentno52.756no

External links

@ref: 38732

culture collection no.: CIP 52.105, NCTC 9709, CCUG 3711

straininfo link

  • @ref: 94613
  • straininfo: 51074

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
38732Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2052.105Collection of Institut Pasteur (CIP 52.105)
44681Curators of the CCUGhttps://www.ccug.se/strain?id=3711Culture Collection University of Gothenburg (CCUG) (CCUG 3711)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68377Automatically annotated from API NH
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
94613Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID51074.1