Strain identifier
BacDive ID: 163782
Type strain: 
Species: Aggregatibacter actinomycetemcomitans
Strain history: M. Saito; Nihon Univ. Sch. of Dent. at Matsudo, Japan; NUM 4039.
NCBI tax ID(s): 714 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 163782
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Aggregatibacter actinomycetemcomitans JCM 30399 is a mesophilic, Gram-negative bacterium that was isolated from Periodontal pocket.
NCBI tax id
- NCBI tax id: 714
- Matching level: species
strain history
- @ref: 67770
- history: M. Saito; Nihon Univ. Sch. of Dent. at Matsudo, Japan; NUM 4039.
doi: 10.13145/bacdive163782.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pasteurellales
- family: Pasteurellaceae
- genus: Aggregatibacter
- species: Aggregatibacter actinomycetemcomitans
- full scientific name: Aggregatibacter actinomycetemcomitans (Klinger 1912) Nørskov-Lauritsen and Kilian 2006
synonyms
@ref synonym 20215 Bacterium actinomycetemcomitans 20215 Haemophilus actinomycetemcomitans 20215 Actinobacillus actinomycetemcomitans
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pasteurellales
family: Pasteurellaceae
genus: Aggregatibacter
species: Aggregatibacter actinomycetemcomitans
full scientific name: Aggregatibacter actinomycetemcomitans (Klinger 1912) N›rskov-Lauritsen and Kilian 2006
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.916
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.979 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Periodontal pocket
taxonmaps
- @ref: 69479
- File name: preview.99_801.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_18;96_321;97_406;98_465;99_801&stattab=map
- Last taxonomy: Aggregatibacter actinomycetemcomitans subclade
- 16S sequence: AB512007
- Sequence Identity:
- Total samples: 8620
- soil counts: 70
- aquatic counts: 282
- animal counts: 8180
- plant counts: 88
Sequence information
16S sequences
- @ref: 67770
- description: Aggregatibacter actinomycetemcomitans gene for 16S ribosomal RNA, partial sequence, strain: NUM4039
- accession: AB512007
- length: 1508
- database: ena
- NCBI tax ID: 714
Genome sequences
- @ref: 66792
- description: Aggregatibacter actinomycetemcomitans NUM4039
- accession: 1407647.3
- assembly level: complete
- database: patric
- NCBI tax ID: 1407647
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 89.23 | no |
| gram-positive | no | 98.569 | no |
| anaerobic | no | 93.844 | no |
| halophile | no | 52.236 | no |
| spore-forming | no | 98.58 | no |
| thermophile | no | 96.925 | yes |
| glucose-util | no | 50 | no |
| aerobic | no | 96.382 | no |
| flagellated | no | 97.021 | no |
| glucose-ferment | no | 51.272 | no |
External links
@ref: 67770
culture collection no.: JCM 30399
literature
- topic: Genetics
- Pubmed-ID: 26988057
- title: Complete Genome Sequence of Aggregatibacter actinomycetemcomitans Serotype g Strain NUM4039 (JCM 30399).
- authors: Saito M, Hirasawa M, Kuwahara N, Okada T, Umezawa K, Kobayashi T, Okamoto M, Naito M, Hirasawa M, Takada K
- journal: Genome Announc
- DOI: 10.1128/genomeA.00158-16
- year: 2016
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |