Bullifex porci (DSM 105750, NM-380-WT-3C1, JCM 34393)

Name: Bullifex porci (DSM 105750, NM-380-WT-3C1, JCM 34393)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159029

Type strain

Strain Designation NM-380-WT-3C1

Culture col. no. DSM 105750 NM-380-WT-3C1 JCM 34393

NCBI tax ID(s) 2606638

Special Collections DSMZ JCM Pig Literature strains DZIF

History DSMZ <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany; NM-380-WT-3C1 JCM <-- B. Abt; DSMZ, Germany; DSM 105750 (=NM-380-WT-3C1) <-- T. Clavel; RWTH Aachen, Germany.

Links

Bullifex porci NM-380-WT-3C1 is an anaerobe, coccus-shaped bacterium that was isolated from pig, WT, 20 months old, feces.

coccus-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 408066

JCM34393,DSM 105750

@ref 20215

Last LPSN update 2026-05-29 08:44:06

Domain Bacteria

Phylum Spirochaetota

Class Spirochaetia

Order Spirochaetales

Family Spirochaetaceae

Genus Bullifex

Species Bullifex porci

Full scientific name Bullifex porci Wylensek et al. 2021

Morphology

Cell morphology

@ref	Gram stain	Confidence	Cell length	Cell shape
125439	negative	95.325
69645			1-10 µm	coccus-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
65852	WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)	Medium recipe at MediaDive	Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water
69645	M9 minimal salts		(Merck, ref. M6030)
69645	Brain Heart Infusion (BHI) agar		supplemented with rumen fluid (10%)
69645	Wilkins-Chalgren Anaerobe broth		supplemented with L-cysteine and DTT (0.05% and 0.02% (w/v), respectively)
69645	Brain Heart Infusion (BHI) agar		supplemented with 10% rumen ?uid

Culture temp

@ref	Growth	Type	Temperature (°C)
65852	positive	growth	37
67770	positive	growth	37
69645	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	90.03
69645	anaerobe

Spore formation

@ref	Spore formation	Confidence
125439		95.639

Observation

69645

ObservationAfter several days of growth, they tend to form infiated round cells with an opaque, half-moon-shaped compartment on one side of the cell that stains positive with DAPI

Antibiotic resistance

@ref	ChEBI	Metabolite	Is resistant	Resistance conc.
69645	28971	ampicillin		100 Unit (disc)
69645	17334	penicillin		100 Unit (disc)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
65852	pig, WT, 20 months old, feces	Kranzberg (Bavaria)	Germany	DEU	Europe
67770	Feces of a German Landrace pig	Freising	Germany	DEU	Europe
69645	Pig feces	Thalhausen, Bavaria	Germany	DEU	Europe	M9 minimal salts	5-20 days	37	anaerobic

Taxonmaps

69479

Global distribution of 16S sequence MN537494 (>99% sequence identity) for Spirochaetaceae from Microbeatlas

Aquatic Samples	361
Soil Samples	298
Animal Samples	16394
Plant Samples	166
Total Samples	17219

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM969563v1 assembly for Bullifex porci NM-380-WT-3C1	contig	GCA_009695635	2606638.3	2936240100	2606638	61.31

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65852	Bullifex porci strain NM-380-WT-3C1 16S ribosomal RNA gene, partial sequence	MN537494	1499		2652310

GC content

@ref	GC-content (mol%)	Method
67770	35.9	genome sequence analysis

[Ref.: #6585289]

Protologger flat file download

Protologger is an all-in-one genome description tool, aimed at simplifying the process of gathering the data required for writing protologues. This includes providing; taxonomic, functional and ecological insights. Protologger is freely accessible at www.protologger.de

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM969563v1 assembly for Bullifex porci NM-380-WT-3C1
BV-BRC: 2606638.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	90.03	no
125439	gram_stain	BacteriaNetⓘ	negative	95.33	no
125439	motility	BacteriaNetⓘ	no	62.94	no
125439	spore_formation	BacteriaNetⓘ	no	95.64	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Spirochaetales bacterium NM-380-WT-3C1
PATRIC: 2606638.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	80.80	no
125438	anaerobic	anaerobicⓘ	yes	86.25	no
125438	spore-forming	spore-formingⓘ	no	83.33	no
125438	aerobic	aerobicⓘ	no	96.93	yes
125438	thermophilic	thermophileⓘ	no	86.62	yes
125438	flagellated	motile2+ⓘ	no	84.63	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65852	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105750
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#69645	David Wylensek, Thomas C. A. Hitch, Thomas Riedel, Afrizal Afrizal, Neeraj Kumar, Esther Wortmann, Tianzhe Liu, Saravanan Devendran, Till R. Lesker, Sara B. Hernández, Viktoria Heine, Eva M. Buhl, Paul M. D'Agostino, Fabio Cumbo, Thomas Fischöder, Marzena Wyschkon, Torey Looft, Valeria R. Parreira, Birte Abt, Heidi L. Doden, Lindsey Ly, João M. P. Alves, Markus Reichlin, Krzysztof Flisikowski, Laura Navarro Suarez, Anthony P. Neumann, Garret Suen, Tomas de Wouters, Sascha Rohn, Ilias Lagkouvardos, Emma Allen-Vercoe, Cathrin Spröer, Boyke Bunk, Anja J. Taverne-Thiele, Marcel Giesbers, Jerry M. Wells, Klaus Neuhaus, Angelika Schnieke, Felipe Cava, Nicola Segata, Lothar Elling, Till Strowig, Jason M. Ridlon, Tobias A. M. Gulder, Jörg Overmann, Thomas Clavel: A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity. Nat. Commun. 11: 2020 ( DOI 10.1038/s41467-020-19929-w )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

#6585289

Thomas C. A. Hitch, Thomas Riedel, Aharon Oren, Jörg Overmann, Trevor D. Lawley, Thomas Clavel: Automated analysis of genomic sequences facilitates high-throughput and comprehensive description of Bacteria ; In review at ISME Communications

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