Protologger v0.99; Run date: 2021-04-12 Quality check ------------- The input 16S rRNA gene is acceptable at 90.1383042694% complete compared to its closest relative The input 16S rRNA gene was not identified as a chimera. The input genome is of high quality and suitable for analysis Genome completeness is ;97.73 Genome contamination is ;1.14 16S rRNA gene analysis ------------------------- The input 16S rRNA determined the isolate to be; gen. nov. The best match was to; Sphaerochaeta pleomorpha--Spirochaetaceae--AF357917 (Valid) (88.8294314381%) Genome analysis --------------- Genome based assignment via GTDB-Tk placed the genome as; d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Sphaerochaetales;f__Sphaerochaetaceae;g__;s__ GTDB-Tk was unable to matched the input genome to that of a previously sequenced genome via FastANI The genome size is; 2.42Mbp base pairs G+C percentage is; 35.8% Due to the low similarity of the input genome to its validly named close relatives, no ANI values were able to be calculated. No validly named species with a sequenced genome within the GTDB-Tk database was identified to have a ANI value >95% with the studied genome No POCP values >50% were identified, indicating the input genome represents a novel genus CRISPR arrays identified; 1 Coding sequences identified; 2239 Functional analysis ------------------- Number of transporters; 98 Number of secretion genes; 4 Number of unique enzymes; 409 The following carbon sources were predicted to be utilised; starch Propionate production predicted from propanoyl-CoA (EC:2.3.1.222, 2.7.2.1) L-glutamate production from ammonia was predicted via L-glutamine (EC:6.3.1.2, 1.4.1.-) Antibiotic resistance analysis ------------------------------ Antibiotic target protection resistance may be conferred by antibiotic target protection via detection of tetracycline-resistant ribosomal protection protein CAZyme analysis --------------- In total the following number of CAZymes were identified within the genome; 134 The following occurances of glycoside hydrolase (GH) families were identified within the genome; GH13;9 GH10;1 GH19;1 GH38;3 GH77;2 GH71;1 GH32;1 GH36;2 GH88;2 GH105;7 GH28;2 GH49;2 GH23;1 GH20;2 GH43;4 GH4;1 GH6;1 GH0;1 GH1;4 GH2;8 GH3;1 GH136;1 GH63;1 GH94;1 GH112;1 GH57;3 The following occurances of glycoside transferase (GT) families were identified within the genome; GT13;2 GT22;1 GT32;3 GT20;1 GT28;4 GT0;1 GT1;1 GT2;5 GT4;14 GT5;2 GT35;1 GT8;1 The following occurances of polysaccharise lyase (PL) families were identified within the genome; PL12;2 The following occurances of carbohydrate esterase (CE) families were identified within the genome; CE12;3 CE11;2 CE14;2 CE1;3 CE9;5 CE8;1 The following occurances of carbohydrate-binding module (CBM) families were identified within the genome; CBM50;10 CBM51;2 CBM13;2 CBM48;2 CBM0;1 CBM5;1 Ecological analysis ------------------- No metagenome assembled genomes (MAGs) matching your genome were identified. The isolate was detected in 0.0% of 1,000 amplicon samples from the insect gut metagenome at a mean relative abundance of 0.00% with a standard deviation of 0.00%. The isolate was detected in 0.0% of 1,000 amplicon samples from the plant metagenome at a mean relative abundance of 0.00% with a standard deviation of 0.00%. The isolate was detected in 0.0% of 1,000 amplicon samples from the human lung metagenome at a mean relative abundance of 0.00% with a standard deviation of 0.00%. The isolate was detected in 0.1% of 1,000 amplicon samples from the mouse gut metagenome at a mean relative abundance of 0.00% with a standard deviation of 0.00%. The isolate was detected in 0.0% of 1,000 amplicon samples from the human skin metagenome at a mean relative abundance of 0.00% with a standard deviation of 0.00%. The isolate was detected in 34.7% of 1,000 amplicon samples from the pig gut metagenome at a mean relative abundance of 0.04% with a standard deviation of 0.09%. The isolate was detected in 0.0% of 1,000 amplicon samples from the human oral metagenome at a mean relative abundance of 0.00% with a standard deviation of 0.00%. The isolate was detected in 0.0% of 1,000 amplicon samples from the activated sludge metagenome at a mean relative abundance of 0.00% with a standard deviation of 0.00%. The isolate was detected in 0.0% of 1,000 amplicon samples from the wastewater metagenome at a mean relative abundance of 0.00% with a standard deviation of 0.00%. The isolate was detected in 0.0% of 1,000 amplicon samples from the marine sediment metagenome at a mean relative abundance of 0.00% with a standard deviation of 0.00%. The isolate was detected in 0.1% of 1,000 amplicon samples from the rhizosphere metagenome at a mean relative abundance of 0.00% with a standard deviation of 0.00%. The isolate was detected in 0.1% of 1,000 amplicon samples from the soil metagenome at a mean relative abundance of 0.00% with a standard deviation of 0.00%. The isolate was detected in 0.0% of 1,000 amplicon samples from the marine metagenome at a mean relative abundance of 0.00% with a standard deviation of 0.00%. The isolate was detected in 0.3% of 1,000 amplicon samples from the freshwater metagenome at a mean relative abundance of 0.00% with a standard deviation of 0.00%. The isolate was detected in 0.0% of 1,000 amplicon samples from the coral metagenome at a mean relative abundance of 0.00% with a standard deviation of 0.00%. The isolate was detected in 0.2% of 1,000 amplicon samples from the human gut metagenome at a mean relative abundance of 0.01% with a standard deviation of 0.01%. The isolate was detected in 0.0% of 1,000 amplicon samples from the chicken gut metagenome at a mean relative abundance of 0.00% with a standard deviation of 0.00%. The isolate was detected in 0.0% of 1,000 amplicon samples from the human vaginal metagenome at a mean relative abundance of 0.00% with a standard deviation of 0.00%. The isolate was detected in 0.2% of 1,000 amplicon samples from the bovine gut metagenome at a mean relative abundance of 0.04% with a standard deviation of 0.04%.