Name: Oliverpabstia intestinalis BSU-380-WT-5A
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 159030

Type strain:

Species: Oliverpabstia intestinalis

Strain Designation: BSU-380-WT-5A, BSM-380-WT-5A

Culture col. no.: DSM 106162, JCM 34394

Strain history: B. Abt; DSMZ, Germany; DSM 106162 (=BSM-380-WT-5A) <-- T. Clavel; RWTH Aachen, Germany.

NCBI tax ID(s): 2606633 (species)

SI-ID 396938

DSM 106162

Special Collections

Section

Oliverpabstia intestinalis BSU-380-WT-5A is an anaerobe, Gram-positive bacterium that was isolated from feces; pig, 5 month old, wild type.

Gram-positive
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Oliverpabstia*
	Species	**Oliverpabstia intestinalis**
	Full Scientific Name (LPSN)	Oliverpabstia intestinalis Wylensek et al. 2021

Information on morphological and physiological properties Morphology

[Ref.: #69645]	Gram stain	positive

[Ref.: #69645]	Cell shape	coccus-shaped

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65853]

Culture medium

WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)

[Ref.: #65853]

Culture medium growth

[Ref.: #65853]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65853]

Culture medium composition

expand / minimize

[Ref.: #69645]

Culture medium

Wilkins-Chalgren Anaerobe broth

[Ref.: #69645]

Culture medium growth

[Ref.: #69645]

Culture medium composition

expand / minimize

[Ref.: #69645]

Culture medium

Bifidus Selective Medium

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Culture medium growth

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Culture medium

Brain Heart Infusion (BHI) agar

[Ref.: #69645]

Culture medium growth

		Temperature
[Ref.: #65853]	growth	37 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #69645]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69645]	Oxygen tolerance	obligate anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %92.935

[Ref.: #69645]	Observation	Cells often grow in pairs
[Ref.: #69645]	Observation	Deconjugates primary bile acids

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65853]	Sample type/isolated from	feces; pig, 5 month old, wild type
[Ref.: #65853]	Geographic location (country and/or sea, region)	Kranzberg (Bavaria)
[Ref.: #65853]	Country	Germany
[Ref.: #65853]	Country ISO 3 Code	DEU
[Ref.: #65853]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Feces of a German Landrace pig
[Ref.: #67770]	Geographic location (country and/or sea, region)	Freising
[Ref.: #67770]	Country	Germany
[Ref.: #67770]	Country ISO 3 Code	DEU
[Ref.: #67770]	Continent	Europe

[Ref.: #69645]	Sample type/isolated from	Pig feces
[Ref.: #69645]	Geographic location (country and/or sea, region)	Thalhausen, Bavaria
[Ref.: #69645]	Country	Germany
[Ref.: #69645]	Country ISO 3 Code	DEU
[Ref.: #69645]	Continent	Europe
[Ref.: #69645]	Enrichment culture	Bifidus Selective Medium
[Ref.: #69645]	Enrichment culture duration	1-3 days
[Ref.: #69645]	Enrichment culture temperature	37 ̊C
[Ref.: #69645]	Isolation/enrichment procedure	anaerobic
* marker position based on {}

Isolation sources categories

#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65853]	Oliverpabstia intestinalis strain BSM-380-WT-5A 16S ribosomal RNA gene, partial sequence	MN537507	1487	GenBank ENA	2652302 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #69645]	Whole genome shotgun	VUMS00000000		GenBank ENA	2606633 tax ID
[Ref.: #66792]	Oliverpabstia intestinalis BSM-380-WT-5A	GCA_009696065	contig	GenBank ENA	2606633 tax ID	*
[Ref.: #66792]	Lachnospiraceae bacterium BSM-380-WT-5A	2606633.3	wgs	PATRIC	2606633 tax ID	*

[Ref.: #69645]

GC-content

44.1 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lachnospiraceae bacterium BSM-380-WT-5A PATRIC: 2606633.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	82	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lachnospiraceae bacterium BSM-380-WT-5A PATRIC: 2606633.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	81.603	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	92.935	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	51.268	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	96.61	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.523	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	80.943	no

Availability in culture collections External links

[Ref.: #65853]

Culture collection no.

DSM 106162, JCM 34394

[Ref.: #111544]

SI-ID 396938

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65853

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106162

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#69645

David Wylensek, Thomas C. A. Hitch, Thomas Riedel, Afrizal Afrizal, Neeraj Kumar, Esther Wortmann, Tianzhe Liu, Saravanan Devendran, Till R. Lesker, Sara B. Hernández, Viktoria Heine, Eva M. Buhl, Paul M. D'Agostino, Fabio Cumbo, Thomas Fischöder, Marzena Wyschkon, Torey Looft, Valeria R. Parreira, Birte Abt, Heidi L. Doden, Lindsey Ly, João M. P. Alves, Markus Reichlin, Krzysztof Flisikowski, Laura Navarro Suarez, Anthony P. Neumann, Garret Suen, Tomas de Wouters, Sascha Rohn, Ilias Lagkouvardos, Emma Allen-Vercoe, Cathrin Spröer, Boyke Bunk, Anja J. Taverne-Thiele, Marcel Giesbers, Jerry M. Wells, Klaus Neuhaus, Angelika Schnieke, Felipe Cava, Nicola Segata, Lothar Elling, Till Strowig, Jason M. Ridlon, Tobias A. M. Gulder, Jörg Overmann, Thomas Clavel: A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity. Nat. Commun. 11: 2020 ( DOI 10.1038/s41467-020-19929-w )

#111544

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396938.1 )

* These data were automatically processed and therefore are not curated

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Lachnospiraceae bacterium BSM-380-WT-5A

Lachnospiraceae bacterium BSM-380-WT-5A

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