Name: Porcincola intestinalis Oil+RF-744-WCA-WT-11
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 159031

Type strain:

Species: Porcincola intestinalis

Strain Designation: Oil+RF-744-WCA-WT-11, Oil-RF-744-WCA-WT-11

Culture col. no.: DSM 106895, JCM 34417

Strain history: B. Abt; DSMZ, Germany; DSM 106895 (=Oil+RF-744-WCA-WT-11) <-- T. Clavel; RWTH Aachen, Germany.

NCBI tax ID(s): 2606632 (species)

SI-ID 408249

DSM 106895

Special Collections

Section

Porcincola intestinalis Oil+RF-744-WCA-WT-11 is an anaerobe, Gram-positive bacterium that builds chains of cells and was isolated from Aachener Minipig, WT, 4 months old, feces.

Gram-positive
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Porcincola*
	Species	**Porcincola intestinalis**
	Full Scientific Name (LPSN)	Porcincola intestinalis Wylensek et al. 2021

Information on morphological and physiological properties Morphology

[Ref.: #69645]	Gram stain	positive

[Ref.: #69645]	Motility	no

[Ref.: #69645]	Multicellular complex forming ability	yes
[Ref.: #69645]	Multicellular complex name	chains of cells
[Ref.: #69645]	Multicellular complex size	10

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65854]

Culture medium

GAM Broth (Gifu Anaerobic Medium Broth) (DSMZ Medium 1713)

[Ref.: #65854]

Culture medium growth

[Ref.: #65854]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65854]

Culture medium composition

expand / minimize

[Ref.: #69645]

Culture medium

Wilkins-Chalgren Anaerobe broth

[Ref.: #69645]

Culture medium growth

[Ref.: #69645]

Culture medium composition

expand / minimize

[Ref.: #69645]

Culture medium

Gifu Anaerobic Medium, modi?ed

[Ref.: #69645]

Culture medium growth

[Ref.: #69645]

Culture medium

Oil-RF-PBS broth

[Ref.: #69645]

Culture medium growth

		Temperature
[Ref.: #65854]	growth	37 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #69645]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69645]	Oxygen tolerance	obligate anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %93.279

[Ref.: #69645]

Observation

Deconjugates primary bile acids

	Enzymes	Enzyme	Enzyme activity
[Ref.: #69645]		lipase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65854]	Sample type/isolated from	Aachener Minipig, WT, 4 months old, feces
[Ref.: #65854]	Geographic location (country and/or sea, region)	Aachen
[Ref.: #65854]	Country	Germany
[Ref.: #65854]	Country ISO 3 Code	DEU
[Ref.: #65854]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Feces of an Aachen minipig in Germany

[Ref.: #69645]	Sample type/isolated from	Pig feces
[Ref.: #69645]	Geographic location (country and/or sea, region)	Aachen, NRW
[Ref.: #69645]	Country	Germany
[Ref.: #69645]	Country ISO 3 Code	DEU
[Ref.: #69645]	Continent	Europe
[Ref.: #69645]	Enrichment culture	Oil-RF-PBS broth
[Ref.: #69645]	Enrichment culture duration	7 days
[Ref.: #69645]	Enrichment culture temperature	37 ̊C
[Ref.: #69645]	Isolation/enrichment procedure	anaerobic
* marker position based on {}

Isolation sources categories

#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MN537519 (>99% sequence identity) for Lachnospiraceae from Microbeatlas

Aquatic Samples	89
Soil Samples	153
Animal Samples	5058
Plant Samples	79
Total Samples	5379

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65854]	Porcincola intestinalis strain Oil+RF-744-WCA-WT-11 16S ribosomal RNA gene, partial sequence	MN537519	1475	GenBank ENA	2652303 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #69645]	Whole genome shotgun	VULZ00000000		GenBank ENA	2606632 tax ID
[Ref.: #66792]	Porcincola intestinalis Oil+RF-744-WCA-WT-11	GCA_009696445	contig	GenBank ENA	2606632 tax ID	*
[Ref.: #66792]	Lachnospiraceae bacterium Oil+RF-744-WCA-WT-11 strain Oil+RF-744-WCA-WT-11 strain Oil+RF-744-WCA-WT-11 strain Oil+RF-744-WCA-WT-11	2606632.3	wgs	PATRIC	2606632 tax ID	*

[Ref.: #69645]

GC-content

52 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lachnospiraceae bacterium Oil+RF-744-WCA-WT-11 strain Oil+RF-744-WCA-WT-11 strain Oil+RF-744-WCA-WT-11 strain Oil+RF-744-WCA-WT-11 PATRIC: 2606632.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	57	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lachnospiraceae bacterium Oil+RF-744-WCA-WT-11 strain Oil+RF-744-WCA-WT-11 strain Oil+RF-744-WCA-WT-11 strain Oil+RF-744-WCA-WT-11 PATRIC: 2606632.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	72.712	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	93.279	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	65.745	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	95.287	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.496	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	84.802	no

Availability in culture collections External links

[Ref.: #65854]

Culture collection no.

DSM 106895, JCM 34417

[Ref.: #111545]

SI-ID 408249

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65854

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106895

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#69645

David Wylensek, Thomas C. A. Hitch, Thomas Riedel, Afrizal Afrizal, Neeraj Kumar, Esther Wortmann, Tianzhe Liu, Saravanan Devendran, Till R. Lesker, Sara B. Hernández, Viktoria Heine, Eva M. Buhl, Paul M. D'Agostino, Fabio Cumbo, Thomas Fischöder, Marzena Wyschkon, Torey Looft, Valeria R. Parreira, Birte Abt, Heidi L. Doden, Lindsey Ly, João M. P. Alves, Markus Reichlin, Krzysztof Flisikowski, Laura Navarro Suarez, Anthony P. Neumann, Garret Suen, Tomas de Wouters, Sascha Rohn, Ilias Lagkouvardos, Emma Allen-Vercoe, Cathrin Spröer, Boyke Bunk, Anja J. Taverne-Thiele, Marcel Giesbers, Jerry M. Wells, Klaus Neuhaus, Angelika Schnieke, Felipe Cava, Nicola Segata, Lothar Elling, Till Strowig, Jason M. Ridlon, Tobias A. M. Gulder, Jörg Overmann, Thomas Clavel: A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity. Nat. Commun. 11: 2020 ( DOI 10.1038/s41467-020-19929-w )

#111545

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408249.1 )

* These data were automatically processed and therefore are not curated

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Lachnospiraceae bacterium Oil+RF-744-WCA-WT-11 strain Oil+RF-744-WCA-WT-11 strain Oil+RF-744-WCA-WT-11 strain Oil+RF-744-WCA-WT-11

Lachnospiraceae bacterium Oil+RF-744-WCA-WT-11 strain Oil+RF-744-WCA-WT-11 strain Oil+RF-744-WCA-WT-11 strain Oil+RF-744-WCA-WT-11

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