Name: Sulfuracidifex tepidarius IC-006
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 159028

Type strain:

Species: Sulfuracidifex tepidarius

Strain Designation: IC-006

Culture col. no.: DSM 104736, JCM 16833

Strain history: T. Itoh IC-006.

NCBI tax ID(s): 1294262 (species)

SI-ID 405578

DSM 104736

Special Collections

DSMZ
JCM

Other strains from Sulfuracidifex tepidarius

Section

Sulfuracidifex tepidarius IC-006 is a Gram-negative archaeon that was isolated from Solfataric soil.

Gram-negative
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Thermoproteota*
	Class	*Thermoprotei*
	Order	*Sulfolobales*
	Family	*Sulfolobaceae*
	Genus	*Sulfuracidifex*
	Species	**Sulfuracidifex tepidarius**
	Full Scientific Name (LPSN)	Sulfuracidifex tepidarius Itoh et al. 2020

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65851]

Culture medium

SULFOLOBUS MEDIUM (DSMZ Medium 88)

[Ref.: #65851]

Culture medium growth

[Ref.: #65851]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65851]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #65851]			growth	65 °C
[Ref.: #67770]			growth	60 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65851]	Sample type/isolated from	Solfataric soil
[Ref.: #65851]	Geographic location (country and/or sea, region)	Hakone, Kanagawa
[Ref.: #65851]	Country	Japan
[Ref.: #65851]	Country ISO 3 Code	JPN
[Ref.: #65851]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Solfataric soil from Ohwaku-dani
[Ref.: #67770]	Geographic location (country and/or sea, region)	Kanagawa
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Volcanic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC382014 (>99% sequence identity) for Sulfuracidifex tepidarius subclade from Microbeatlas

Aquatic Samples	3
Soil Samples
Animal Samples
Plant Samples
Total Samples	3

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65851]	Sulfuracidifex tepidarius IC-006 gene for 16S ribosomal RNA, partial sequence	LC382014	1406	GenBank ENA	1294262 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sulfuracidifex tepidarius IC-006	GCA_008326425	complete	GenBank ENA	1294262 tax ID	*
[Ref.: #66792]	Sulfuracidifex tepidarius JCM 16833	GCA_001316085	contig	GenBank ENA	1294262 tax ID	*
[Ref.: #66792]	Sulfolobus sp. JCM 16833	2681813019	draft	JGI IMG/M	1294262 tax ID	*
[Ref.: #66792]	Sulfolobus sp. JCM 16833 strain IC-006	1294262.8	complete	PATRIC	1294262 tax ID	*
[Ref.: #66792]	Sulfolobus sp. JCM 16833	1294262.3	wgs	PATRIC	1294262 tax ID	*

[Ref.: #65851]	GC-content	42 mol%	sequence analysis
[Ref.: #67770]	GC-content	42.4 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sulfuracidifex tepidarius IC-006 NCBI: GCA_008326425.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	74.522	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	70.527	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	63.629	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.861	no
[Ref.: #69480]	thermophilic	thermophileⓘ	yes	77.049	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89	no

Availability in culture collections External links

[Ref.: #65851]

Culture collection no.

DSM 104736, JCM 16833

[Ref.: #111542]

SI-ID 405578

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sulfuracidifex tepidarius gen. nov., sp. nov. and transfer of Sulfolobus metallicus Huber and Stetter 1992 to the genus Sulfuracidifex as Sulfuracidifex metallicus comb. nov.	Itoh T, Miura T, Sakai HD, Kato S, Ohkuma M, Takashina T	Int J Syst Evol Microbiol	10.1099/ijsem.0.003981	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65851

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104736

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#111542

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405578.1 )

* These data were automatically processed and therefore are not curated

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