Strain identifier
BacDive ID: 159028
Type strain: 
Species: Sulfuracidifex tepidarius
Strain Designation: IC-006
Strain history: T. Itoh IC-006.
NCBI tax ID(s): 1294262 (species)
version 9.1 (current version)
General
@ref: 65851
BacDive-ID: 159028
DSM-Number: 104736
keywords: genome sequence, 16S sequence, Archaea, Gram-negative
description: Sulfuracidifex tepidarius IC-006 is a Gram-negative archaeon that was isolated from Solfataric soil.
NCBI tax id
- NCBI tax id: 1294262
- Matching level: species
strain history
| @ref | history |
|---|---|
| 65851 | <- T. Itoh, JCM; JCM 16833 <- T. Itoh {1993} |
| 67770 | T. Itoh IC-006. |
doi: 10.13145/bacdive159028.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/thermoproteota
- domain: Archaea
- phylum: Thermoproteota
- class: Thermoprotei
- order: Sulfolobales
- family: Sulfolobaceae
- genus: Sulfuracidifex
- species: Sulfuracidifex tepidarius
- full scientific name: Sulfuracidifex tepidarius Itoh et al. 2020
@ref: 65851
domain: Archaea
phylum: Crenarchaeota
class: Thermoprotei
order: Sulfolobales
family: Sulfolobaceae
genus: Sulfuracidifex
species: Sulfuracidifex tepidarius
full scientific name: Sulfuracidifex tepidarius Itoh et al. 2020
strain designation: IC-006
type strain: yes
Culture and growth conditions
culture medium
- @ref: 65851
- name: SULFOLOBUS MEDIUM (DSMZ Medium 88)
- growth: yes
- link: https://mediadive.dsmz.de/medium/88
- composition: Name: SULFOLOBUS MEDIUM (DSMZ Medium 88; with strain-specific modifications) Composition: Sulfur powder 4.9505 g/l (NH4)2SO4 1.28713 g/l KH2PO4 0.277228 g/l MgSO4 x 7 H2O 0.247525 g/l Yeast extract 0.19802 g/l CaCl2 x 2 H2O 0.0693069 g/l FeCl3 x 6 H2O 0.019802 g/l Na2B4O7 x 10 H2O 0.00445545 g/l MnCl2 x 4 H2O 0.00178218 g/l ZnSO4 x 7 H2O 0.000217822 g/l CuCl2 x 2 H2O 4.95049e-05 g/l Na2MoO4 x 2 H2O 2.9703e-05 g/l VOSO4 x 2 H2O 2.9703e-05 g/l CoSO4 x 7 H2O 9.90099e-06 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 65851 | positive | growth | 65 |
| 67770 | positive | growth | 60 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 65851 | Solfataric soil | Hakone, Kanagawa | Japan | JPN | Asia |
| 67770 | Solfataric soil from Ohwaku-dani | Kanagawa | Japan | JPN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Environmental | #Terrestrial | #Volcanic |
taxonmaps
- @ref: 69479
- File name: preview.99_187207.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17898;96_68861;97_89508;98_121789;99_187207&stattab=map
- Last taxonomy: Sulfuracidifex tepidarius subclade
- 16S sequence: LC382014
- Sequence Identity:
- Total samples: 3
- aquatic counts: 3
Sequence information
16S sequences
- @ref: 65851
- description: Sulfuracidifex tepidarius IC-006 gene for 16S ribosomal RNA, partial sequence
- accession: LC382014
- length: 1406
- database: nuccore
- NCBI tax ID: 1294262
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Sulfuracidifex tepidarius IC-006 | GCA_008326425 | complete | ncbi | 1294262 |
| 66792 | Sulfuracidifex tepidarius JCM 16833 | GCA_001316085 | contig | ncbi | 1294262 |
| 66792 | Sulfolobus sp. JCM 16833 | 2681813019 | draft | img | 1294262 |
| 66792 | Sulfolobus sp. JCM 16833 strain IC-006 | 1294262.8 | complete | patric | 1294262 |
| 66792 | Sulfolobus sp. JCM 16833 | 1294262.3 | wgs | patric | 1294262 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 65851 | 42 | sequence analysis |
| 67770 | 42.4 | genome sequence analysis |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 74.522 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 70.527 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 63.629 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 88.861 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | yes | 77.049 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 89 | no |
External links
@ref: 65851
culture collection no.: DSM 104736, JCM 16833
straininfo link
- @ref: 111542
- straininfo: 405578
literature
- topic: Phylogeny
- Pubmed-ID: 31958046
- title: Sulfuracidifex tepidarius gen. nov., sp. nov. and transfer of Sulfolobus metallicus Huber and Stetter 1992 to the genus Sulfuracidifex as Sulfuracidifex metallicus comb. nov.
- authors: Itoh T, Miura T, Sakai HD, Kato S, Ohkuma M, Takashina T
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.003981
- year: 2020
- mesh: Autotrophic Processes, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Japan, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Sulfolobaceae/*classification/isolation & purification, Sulfolobus/*classification
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 65851 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-104736 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104736) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 111542 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405578.1 |