Name: Lactobacillus amylovorus Bifido-178-WT-3C
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158985

Type strain:

Species: Lactobacillus amylovorus

Strain Designation: Bifido-178-WT-3C

Culture col. no.: DSM 107288

Strain history: <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany;

NCBI tax ID(s): 1604 (species)

SI-ID 403375

DSM 107288

Special Collections

Other strains from Lactobacillus amylovorus

Section

Lactobacillus amylovorus Bifido-178-WT-3C is a bacterium that was isolated from feces; pig, 3 month old, wild type.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Lactobacillus*
	Species	**Lactobacillus amylovorus**
	Full Scientific Name (LPSN)	Lactobacillus amylovorus Nakamura 1981

Synonym

Lactobacillus sobrius

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %93.551

[Ref.: #69480]	Motility	no Confidence in %93

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65808]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #65808]

Culture medium growth

[Ref.: #65808]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65808]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #65808]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %91.339

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65808]	Sample type/isolated from	feces; pig, 3 month old, wild type
[Ref.: #65808]	Geographic location (country and/or sea, region)	Munich
[Ref.: #65808]	Country	Germany
[Ref.: #65808]	Country ISO 3 Code	DEU
[Ref.: #65808]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MN537532 (>99% sequence identity) for Lactobacillus from Microbeatlas

Aquatic Samples	3832
Soil Samples	2681
Animal Samples	57081
Plant Samples	990
Total Samples	64584

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65808]	Lactobacillus sp. strain DSM 107288 16S ribosomal RNA gene, partial sequence	MN537532	1393	GenBank ENA	1591 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Lactobacillus amylovorus Bifido-178-WT-3C	GCA_012843555	contig	GenBank ENA	1604 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactobacillus amylovorus Bifido-178-WT-3C NCBI: GCA_012843555.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	93.551	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	73.471	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	97.577	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	91.339	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	93	no

Availability in culture collections External links

[Ref.: #65808]

Culture collection no.

DSM 107288

[Ref.: #111501]

SI-ID 403375

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65808

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107288

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#111501

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403375.1 )

* These data were automatically processed and therefore are not curated

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