Lactobacillus amylovorus subsp. amylovorus (DSM 107288, Bifido-178-WT-3C)

Name: Lactobacillus amylovorus subsp. amylovorus (DSM 107288, Bifido-178-WT-3C)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158985

Type strain

Strain Designation Bifido-178-WT-3C

Culture col. no. DSM 107288 Bifido-178-WT-3C

NCBI tax ID(s) 3378537

Special Collections DSMZ Pig DZIF

History <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany;

Links

Lactobacillus amylovorus subsp. amylovorus Bifido-178-WT-3C is a mesophilic prokaryote that was isolated from feces; pig, 3 month old, wild type.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 403375

DSM 107288

@ref 20215

Last LPSN update 2025-12-16 10:08:09

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Lactobacillus

Species Lactobacillus amylovorus subsp. amylovorus

Full scientific name Lactobacillus amylovorus subsp. amylovorus (Nakamura 1981) Yamane et al. 2024

BacDive ID	Other strains from **Lactobacillus amylovorus subsp. amylovorus** (3)	Type strain
6413	L. amylovorus subsp. amylovorus B-4540, DSM 20531, ATCC 33620, NRRL B-4540, ... (type strain)
6414	L. amylovorus subsp. amylovorus B-4542, CCUG 27202, DSM 20532, ATCC 33622, ...
6415	L. amylovorus subsp. amylovorus H 27a, DSM 20552, CIP 104566, JCM 2125, KCTC ...

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125438		93
125438		93.551	positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65808	MRS MEDIUM (DSMZ Medium 11)		Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
65808	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.3

Spore formation

@ref	Spore formation	Confidence
125438		91.339

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
65808	feces; pig, 3 month old, wild type	Munich	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence MN537532 (>99% sequence identity) for Lactobacillus from Microbeatlas

Aquatic Samples	3832
Soil Samples	2681
Animal Samples	57081
Plant Samples	990
Total Samples	64584

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
65808	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1284355v1 assembly for Lactobacillus amylovorus subsp. animalium Bifido-178-WT-3C	contig	GCA_012843555	1604.129	1604	49.98

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65808	Lactobacillus sp. strain DSM 107288 16S ribosomal RNA gene, partial sequence	MN537532	1393		1591

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lactobacillus amylovorus Bifido-178-WT-3C
NCBI: GCA_012843555

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	50.10	no
125439	motility	BacteriaNetⓘ	yes	59.20	no
125439	gram_stain	BacteriaNetⓘ	variable	68.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus amylovorus Bifido-178-WT-3C
NCBI: GCA_012843555.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	93.55	no
125438	anaerobic	anaerobicⓘ	no	73.47	no
125438	aerobic	aerobicⓘ	no	97.58	no
125438	spore-forming	spore-formingⓘ	no	91.34	no
125438	thermophilic	thermophileⓘ	no	94.50	yes
125438	flagellated	motile2+ⓘ	no	93.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Corrigendum. Proposal of Lactobacillus amylovorus subsp. animalis subsp. nov. and an emended description of Lactobacillus amylovorus.	Yamane K, Tanizawa Y, Kobayashi H, Kamizono T, Kojima Y, Takagi H, Tohno M.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006564	2024
Phylogeny	Proposal of Lactobacillus amylovorus subsp. animalis subsp. nov. and an emended description of Lactobacillus amylovorus.	Yamane K, Tanizawa Y, Kobayashi H, Kamizono T, Kojima Y, Takagi H, Tohno M.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006517	2024

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65808	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107288
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lactobacillus amylovorus subsp. amylovorus (DSM 107288, Bifido-178-WT-3C)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_012843555

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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