Strain identifier
BacDive ID: 158985
Type strain: 
Species: Lactobacillus amylovorus
Strain Designation: Bifido-178-WT-3C
Strain history: <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany;
NCBI tax ID(s): 1604 (species)
version 9.1 (current version)
General
@ref: 65808
BacDive-ID: 158985
DSM-Number: 107288
keywords: genome sequence, 16S sequence, Bacteria
description: Lactobacillus amylovorus Bifido-178-WT-3C is a bacterium that was isolated from feces; pig, 3 month old, wild type.
NCBI tax id
- NCBI tax id: 1604
- Matching level: species
strain history
- @ref: 65808
- history: <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany;
doi: 10.13145/bacdive158985.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Lactobacillus
- species: Lactobacillus amylovorus
- full scientific name: Lactobacillus amylovorus Nakamura 1981
synonyms
- @ref: 20215
- synonym: Lactobacillus sobrius
@ref: 65808
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Lactobacillus
species: Lactobacillus amylovorus
full scientific name: Lactobacillus amylovorus Nakamura 1981
strain designation: Bifido-178-WT-3C
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | positive | 93.551 | |
| 69480 | 93 | no |
Culture and growth conditions
culture medium
- @ref: 65808
- name: MRS MEDIUM (DSMZ Medium 11)
- growth: yes
- link: https://mediadive.dsmz.de/medium/11
- composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
culture temp
- @ref: 65808
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 91.339
Isolation, sampling and environmental information
isolation
- @ref: 65808
- sample type: feces; pig, 3 month old, wild type
- geographic location: Munich
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
| #Host | #Mammals | #Suidae (Pig,Swine) |
taxonmaps
- @ref: 69479
- File name: preview.99_1025.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_46;96_146;97_157;98_801;99_1025&stattab=map
- Last taxonomy: Lactobacillus
- 16S sequence: MN537532
- Sequence Identity:
- Total samples: 64584
- soil counts: 2681
- aquatic counts: 3832
- animal counts: 57081
- plant counts: 990
Sequence information
16S sequences
- @ref: 65808
- description: Lactobacillus sp. strain DSM 107288 16S ribosomal RNA gene, partial sequence
- accession: MN537532
- length: 1393
- database: nuccore
- NCBI tax ID: 1591
Genome sequences
- @ref: 66792
- description: Lactobacillus amylovorus Bifido-178-WT-3C
- accession: GCA_012843555
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1604
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 93.551 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 73.471 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 97.577 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 91.339 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 94.5 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 93 | no |
External links
@ref: 65808
culture collection no.: DSM 107288
straininfo link
- @ref: 111501
- straininfo: 403375
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 65808 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-107288 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107288) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 111501 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403375.1 |